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LacPavin_0818_WC45_scaffold_30120_prodigal-single.1__X__X__00240
Bact-VirLacPavin_0818_WC45_scaffold_30120_prodigal-single.1__X__X__00240
Identity
- Kingdom:
- phage
Quality
87.5
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 6-70
Domain cluster:
representative
CATH (40)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3jr7A03 | 3.30.1180.10 | Alpha Beta › 2-Layer Sandwich › Hypothetical Protein Tm841; Chain: A;domain 3 › | 0.76 | 57.0 | 4.57e-01 | 80.0% | 52.8% |
| 3pl5A03 | 3.30.1180.10 | Alpha Beta › 2-Layer Sandwich › Hypothetical Protein Tm841; Chain: A;domain 3 › | 0.74 | 57.0 | 4.55e-01 | 81.5% | 49.6% |
| 3kulA01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.65 | 45.0 | 4.08e-01 | 72.3% | 89.9% |
| 3iq2A00 | 3.30.1520.10 | Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain | 0.65 | 48.0 | 3.93e-01 | 80.0% | 73.2% |
| 8aa0E01 | 2.115.10.20 | Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 | 0.65 | 58.0 | 3.70e-01 | 100.0% | 33.3% |
| 3fm8D03 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.65 | 49.0 | 4.21e-01 | 84.6% | 50.0% |
| 4bg8A01 | 3.30.420.430 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › | 0.64 | 49.0 | 3.88e-01 | 81.5% | 51.9% |
| 1k32A02 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.62 | 55.0 | 3.48e-01 | 100.0% | 27.7% |
| 2z3zA01 | 2.140.10.30 | Mainly Beta › 8 Propeller › Methanol Dehydrogenase; Chain A › Dipeptidylpeptidase IV, N-terminal domain | 0.62 | 55.0 | 3.38e-01 | 100.0% | 21.1% |
| 1y7bA01 | 2.115.10.20 | Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 | 0.61 | 54.0 | 3.44e-01 | 100.0% | 29.8% |
| 3tw8A01 | 3.30.450.200 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Longin module | 0.61 | 44.0 | 3.58e-01 | 81.5% | 37.7% |
| 2a9sB00 | 3.90.950.20 | Alpha Beta › Alpha-Beta Complex › Maf protein › CinA-like | 0.61 | 53.0 | 4.01e-01 | 100.0% | 80.6% |
| 2czoA00 | 3.30.1520.10 | Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain | 0.60 | 44.0 | 3.59e-01 | 80.0% | 75.4% |
| 6mlyB01 | 2.115.10.20 | Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 | 0.59 | 52.0 | 3.48e-01 | 100.0% | 35.1% |
| 4h0pA01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.58 | 48.0 | 3.52e-01 | 98.5% | 35.3% |
| 3a58A01 | 2.30.29.90 | Mainly Beta › Roll › PH-domain like › | 0.57 | 49.0 | 3.60e-01 | 95.4% | 51.1% |
| 6btdA00 | 3.40.225.10 | Alpha Beta › 3-Layer(aba) Sandwich › L-fuculose-1-phosphate Aldolase › Class II aldolase/adducin N-terminal domain | 0.57 | 48.0 | 3.49e-01 | 100.0% | 84.2% |
| 3vsfC01 | 2.115.10.20 | Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 | 0.56 | 47.0 | 3.02e-01 | 95.4% | 28.4% |
| 1eotA00 | 2.40.50.40 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.56 | 36.0 | 3.51e-01 | 90.8% | 56.8% |
| 6hgcA01 | 3.40.532.10 | Alpha Beta › 3-Layer(aba) Sandwich › Ubiquitin C-terminal Hydrolase UCH-l3 › Peptidase C12, ubiquitin carboxyl-terminal hydrolase | 0.56 | 46.0 | 3.42e-01 | 96.9% | 77.0% |
| 3qz4A00 | 2.115.10.20 | Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 | 0.55 | 48.0 | 3.12e-01 | 100.0% | 33.7% |
| 4pj2A00 | 2.40.128.460 | Mainly Beta › Beta Barrel › Lipocalin › Periplasmic lysozyme inhibitor of I-type lysozyme | 0.55 | 46.0 | 3.89e-01 | 100.0% | 79.3% |
| 2lezA00 | 3.30.2450.10 | Alpha Beta › 2-Layer Sandwich › Secreted effector protein pipB2 fold › Secreted effector protein pipB2 | 0.55 | 41.0 | 3.48e-01 | 90.8% | 45.8% |
| 2ciuA00 | 3.10.450.320 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Mitochondrial import inner membrane translocase subunit Tim21 | 0.55 | 39.0 | 3.24e-01 | 76.9% | 55.3% |
| 3nqhA01 | 2.115.10.20 | Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 | 0.55 | 45.0 | 3.03e-01 | 100.0% | 28.1% |
| 6eufA01 | 2.115.10.20 | Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 | 0.54 | 45.0 | 3.01e-01 | 98.5% | 34.1% |
| 1t3qC03 | 3.30.390.50 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › CO dehydrogenase flavoprotein, C-terminal domain | 0.54 | 45.0 | 3.89e-01 | 100.0% | 82.0% |
| 2e1qC05 | 3.30.390.50 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › CO dehydrogenase flavoprotein, C-terminal domain | 0.54 | 45.0 | 3.81e-01 | 100.0% | 65.3% |
| 1f9qD00 | 2.40.50.40 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.53 | 36.0 | 3.59e-01 | 81.5% | 68.2% |
| 6qpwA01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.53 | 36.0 | 2.87e-01 | 96.9% | 30.7% |
| 1ub1A00 | 3.30.890.10 | Alpha Beta › 2-Layer Sandwich › Methyl-cpg-binding Protein 2; Chain A › Methyl-cpg-binding Protein 2; Chain A | 0.53 | 39.0 | 3.27e-01 | 83.1% | 60.0% |
| 5y6qB02 | 3.30.390.50 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › CO dehydrogenase flavoprotein, C-terminal domain | 0.52 | 43.0 | 3.82e-01 | 100.0% | 70.8% |
| 5h80B03 | 3.30.470.20 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain | 0.52 | 44.0 | 3.05e-01 | 100.0% | 89.6% |
| 4zohB03 | 3.30.390.50 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › CO dehydrogenase flavoprotein, C-terminal domain | 0.51 | 42.0 | 3.77e-01 | 100.0% | 72.5% |
| 1n62C02 | 3.30.390.50 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › CO dehydrogenase flavoprotein, C-terminal domain | 0.51 | 42.0 | 3.73e-01 | 100.0% | 86.7% |
| 1jkmA00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.51 | 43.0 | 2.79e-01 | 100.0% | 69.6% |
| 4emhA00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.50 | 38.0 | 3.92e-01 | 96.9% | 86.7% |
| 2h8lA02 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.50 | 41.0 | 3.59e-01 | 100.0% | 86.6% |
| 1icwB00 | 2.40.50.40 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.50 | 34.0 | 3.40e-01 | 81.5% | 69.7% |
| 2jjdF02 | 3.90.190.10 | Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily | 0.50 | 42.0 | 2.91e-01 | 100.0% | 60.7% |
ECOD (42)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1937177 | 301.13.1.1 ↗ | a+b three layers › Bacillus chorismate mutase-like › DAK1/DegV C-terminal domain › DAK1/DegV C-terminal domain › DegV | 0.76 | 57.0 | 4.57e-01 | 80.0% | 52.8% |
| 3588328 | 301.13.1.1 ↗ | a+b three layers › Bacillus chorismate mutase-like › DAK1/DegV C-terminal domain › DAK1/DegV C-terminal domain › DegV | 0.74 | 56.0 | 4.39e-01 | 80.0% | 51.5% |
| 3589392 | 301.13.1.1 ↗ | a+b three layers › Bacillus chorismate mutase-like › DAK1/DegV C-terminal domain › DAK1/DegV C-terminal domain › DegV | 0.73 | 56.0 | 4.43e-01 | 81.5% | 52.3% |
| 3390004 | 220.1.1.1 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH | 0.72 | 52.0 | 4.38e-01 | 80.0% | 45.5% |
| 3538314 | 220.1.1.1 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH | 0.71 | 50.0 | 4.13e-01 | 80.0% | 40.8% |
| 4968133 | 4312.1.1.1 ↗ | a+b two layers › RelE-like › RelE-like › RelE-like › BrnT_toxin | 0.69 | 52.0 | 4.61e-01 | 83.1% | 55.9% |
| 3246054 | 5.1.3.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed | 0.67 | 55.0 | 3.34e-01 | 100.0% | 14.3% |
| 3479464 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.67 | 47.0 | 3.89e-01 | 80.0% | 41.7% |
| 3422528 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.67 | 46.0 | 4.75e-01 | 80.0% | 78.3% |
| 3284924 | 5.1.3.48 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Gmad1 | 0.66 | 59.0 | 3.87e-01 | 100.0% | 26.1% |
| 3933919 | 220.1.1.176 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › DUF7778 | 0.64 | 46.0 | 3.71e-01 | 80.0% | 37.8% |
| 3593024 | 331.9.1.0 ↗ | a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain | 0.63 | 44.0 | 3.70e-01 | 73.8% | 43.5% |
| 3684267 | 5.1.10.15 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 12-bladed › RPE65 | 0.63 | 52.0 | 4.18e-01 | 98.5% | 46.2% |
| 3411789 | 220.1.1.66 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › SOS1_NGEF_PH | 0.63 | 46.0 | 3.72e-01 | 81.5% | 40.0% |
| 4985600 | 896.1.1.0 ↗ | a+b two layers › SRP9/14-like › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Signal recognition particle alu RNA binding heterodimer SRP9/14-related | 0.62 | 45.0 | 4.22e-01 | 80.0% | 62.5% |
| 3833570 | 298.1.1.24 ↗ | a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › GFO_IDH_MocA_C3 | 0.61 | 42.0 | 2.89e-01 | 81.5% | 19.6% |
| 3720832 | 5.1.3.23 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › SGL | 0.60 | 54.0 | 3.45e-01 | 100.0% | 24.1% |
| 4982498 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.60 | 47.0 | 2.76e-01 | 96.9% | 9.3% |
| 3890539 | 295.1.1.0 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain | 0.60 | 45.0 | 4.71e-01 | 86.2% | 90.0% |
| 4959306 | 5.1.3.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed | 0.60 | 52.0 | 3.34e-01 | 100.0% | 23.0% |
| 3956013 | 881.1.1.14 ↗ | a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › DUF3515 | 0.60 | 46.0 | 3.78e-01 | 100.0% | 43.4% |
| 3936097 | 4026.1.1.0 ↗ | a+b three layers › a+b domain in Rap/Ran-GAP (Pfam 02145) › a+b domain in Rap/Ran-GAP (Pfam 02145) › a+b domain in Rap/Ran-GAP (Pfam 02145) | 0.59 | 50.0 | 3.74e-01 | 100.0% | 38.6% |
| 3643800 | 813.1.1.1 ↗ | a+b two layers › Chalcone isomerase › Chalcone isomerase › Chalcone isomerase › Chalcone | 0.59 | 46.0 | 3.26e-01 | 89.2% | 80.4% |
| 4262428 | 2005.1.1.18 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › NAD_synthase | 0.57 | 42.0 | 2.76e-01 | 81.5% | 31.6% |
| 3585813 | 220.1.1.50 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_17 | 0.55 | 40.0 | 4.08e-01 | 81.5% | 80.0% |
| 3226288 | 2484.1.1.190 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › FBA_2 | 0.55 | 44.0 | 3.05e-01 | 96.9% | 24.4% |
| 4965528 | 2003.1.2.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain | 0.54 | 46.0 | 3.27e-01 | 100.0% | 67.6% |
| 3737927 | 220.1.1.294 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PF26663 | 0.54 | 44.0 | 3.71e-01 | 90.8% | 64.5% |
| 3588482 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.54 | 40.0 | 3.68e-01 | 93.8% | 60.0% |
| 3805804 | 284.1.3.0 ↗ | a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain | 0.54 | 42.0 | 3.99e-01 | 100.0% | 71.8% |
| 4538466 | 3197.1.1.1 ↗ | a+b two layers › N-terminal domain of effector protein PipB2 › N-terminal domain of effector protein PipB2 › N-terminal domain of effector protein PipB2 › PipB2_N | 0.53 | 42.0 | 3.50e-01 | 92.3% | 50.8% |
| 4096099 | 244.3.1.3 ↗ | a+b two layers › FAD-linked reductases, C-terminal domain-like › SufE/NifU › SufE/NifU › CO_deh_flav_C | 0.53 | 44.0 | 3.76e-01 | 100.0% | 64.2% |
| 3699353 | 2007.2.3.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase | 0.53 | 40.0 | 2.57e-01 | 81.5% | 88.9% |
| 3819740 | 284.1.3.4 ↗ | a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain › CCTL2_WNK | 0.53 | 42.0 | 3.92e-01 | 100.0% | 68.9% |
| 3318685 | 284.1.3.2 ↗ | a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain › OSR1_C | 0.52 | 42.0 | 3.73e-01 | 100.0% | 59.0% |
| 3662110 | 210.1.1.1 ↗ | a+b four layers › Ntn/PP2C › Ntn › Proteasome subunits › Proteasome | 0.52 | 43.0 | 3.14e-01 | 96.9% | 62.4% |
| 3589473 | 4.8.1.0 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like | 0.52 | 36.0 | 3.44e-01 | 78.5% | 60.0% |
| 3801858 | 252.1.1.0 ↗ | a+b two layers › DNA-binding domain › Methyl-CpG-binding domain, MBD › Methyl-CpG-binding domain, MBD | 0.52 | 37.0 | 3.83e-01 | 100.0% | 81.7% |
| 3936335 | 244.3.1.3 ↗ | a+b two layers › FAD-linked reductases, C-terminal domain-like › SufE/NifU › SufE/NifU › CO_deh_flav_C | 0.52 | 44.0 | 3.80e-01 | 100.0% | 70.9% |
| 3517332 | 244.3.1.3 ↗ | a+b two layers › FAD-linked reductases, C-terminal domain-like › SufE/NifU › SufE/NifU › CO_deh_flav_C | 0.52 | 43.0 | 3.75e-01 | 100.0% | 70.9% |
| 5004850 | 375.1.1.21 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-ZPR1 | 0.51 | 34.0 | 3.71e-01 | 70.8% | 98.0% |
| 3636954 | 7579.1.1.92 ↗ | a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Abhydrolase_1, Abhydrolase_6 | 0.51 | 43.0 | 2.74e-01 | 98.5% | 53.8% |