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LacPavin_0818_WC45_scaffold_30120_prodigal-single.1__X__X__00249

Bact-Vir

LacPavin_0818_WC45_scaffold_30120_prodigal-single.1__X__X__00249

Identity

Kingdom:
phage

Quality

88.6 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-60
PDB
Domain cluster: representative
CATH (20)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3teeA02 2.30.30.760 Mainly Beta › Roll › SH3 type barrels. › 0.72 58.0 5.33e-01 100.0% 68.5%
3agjF01 2.30.30.870 Mainly Beta › Roll › SH3 type barrels. › Pelota, domain A 0.69 62.0 4.75e-01 100.0% 56.7%
7afrX02 2.30.30.180 Mainly Beta › Roll › SH3 type barrels. › Ribosome maturation factor RimP, C-terminal domain 0.63 49.0 4.88e-01 100.0% 83.3%
1x6gA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.62 55.0 4.91e-01 98.3% 70.4%
3h7tB01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.62 53.0 4.26e-01 100.0% 84.4%
5brrE01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.58 50.0 3.90e-01 100.0% 86.6%
1yb3A00 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.57 47.0 3.48e-01 94.8% 64.2%
1vq8B02 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.55 47.0 3.64e-01 100.0% 51.1%
8gjjC02 3.30.2090.10 Alpha Beta › 2-Layer Sandwich › Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains › Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains 0.55 39.0 3.43e-01 77.6% 98.9%
1ib8A02 2.30.30.180 Mainly Beta › Roll › SH3 type barrels. › Ribosome maturation factor RimP, C-terminal domain 0.54 44.0 4.27e-01 100.0% 83.6%
3npfA02 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.54 43.0 4.09e-01 89.7% 80.0%
7sxqA01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.53 42.0 2.78e-01 86.2% 79.4%
2egeA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.53 43.0 4.04e-01 93.1% 78.7%
4f3lA02 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.53 41.0 3.38e-01 87.9% 52.5%
3loyA02 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 39.0 3.21e-01 82.8% 75.4%
2krsA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.52 40.0 4.04e-01 86.2% 88.3%
3htyA00 2.40.128.280 Mainly Beta › Beta Barrel › Lipocalin › 0.52 44.0 3.85e-01 100.0% 97.9%
3pgbA01 2.70.98.20 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Copper amine oxidase, catalytic domain 0.51 39.0 2.39e-01 93.1% 35.6%
6toaE01 2.40.10.270 Mainly Beta › Beta Barrel › Thrombin, subunit H › Bacteriophage SPP1 head-tail adaptor protein 0.51 39.0 3.45e-01 93.1% 81.6%
1x9tA02 3.90.1620.10 Alpha Beta › Alpha-Beta Complex › adenovirus 2 penton base, domain 2 › adenovirus 2 penton base, domain 2 0.50 39.0 2.65e-01 93.1% 38.6%
ECOD (18)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3700518 4.23.1.2 ↗ beta barrels › SH3 › Dom34/Pelota N-terminal domain-like › Dom34/Pelota N-terminal domain-like › PF26356 0.67 59.0 4.55e-01 100.0% 55.4%
4932514 4.23.1.2 ↗ beta barrels › SH3 › Dom34/Pelota N-terminal domain-like › Dom34/Pelota N-terminal domain-like › PF26356 0.66 55.0 4.50e-01 100.0% 61.7%
4028378 4.23.1.2 ↗ beta barrels › SH3 › Dom34/Pelota N-terminal domain-like › Dom34/Pelota N-terminal domain-like › PF26356 0.66 57.0 4.45e-01 100.0% 60.0%
3931418 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.60 47.0 4.66e-01 91.4% 83.3%
3599257 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.59 49.0 4.80e-01 98.3% 84.6%
3186184 270.1.1.0 ↗ beta barrels › FMT C-terminal domain-like › FMT C-terminal domain-related › FMT C-terminal domain-related 0.58 48.0 3.62e-01 96.6% 91.9%
3399557 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.58 51.0 4.80e-01 100.0% 88.6%
4343574 3454.1.1.5 ↗ beta barrels › GspC HR domain/PilP-like › GspC HR domain/PilP-like › GspC HR domain/PilP-like › Y4YQ_C 0.57 43.0 4.55e-01 100.0% 96.0%
4664510 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.56 44.0 4.27e-01 91.4% 76.9%
3225762 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.56 44.0 4.13e-01 93.1% 69.3%
3249895 1.1.9.0 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.55 47.0 4.50e-01 100.0% 94.3%
3763060 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.55 45.0 4.29e-01 93.1% 84.3%
1263586 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.54 43.0 4.04e-01 89.7% 77.8%
2323986 601.7.1.40 ↗ alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain › Cas13a_C 0.53 36.0 2.30e-01 72.4% 21.5%
3926701 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.52 41.0 3.96e-01 93.1% 75.0%
1281147 9.23.1.1 ↗ beta barrels › Lipocalins/Streptavidin › Hypothetical protein BT_0869 › Hypothetical protein BT_0869 › Lipocalin_3 0.52 44.0 3.86e-01 100.0% 97.9%
3991921 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.52 42.0 3.49e-01 94.8% 63.2%
3781750 9.2.1.3 ↗ beta barrels › Lipocalins/Streptavidin › Avidin/Streptavidin › Avidin/Streptavidin › FBO_C 0.51 40.0 2.87e-01 93.1% 74.3%