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LacPavin_0818_WC45_scaffold_30120_prodigal-single.1__X__X__00262
Bact-VirLacPavin_0818_WC45_scaffold_30120_prodigal-single.1__X__X__00262
Identity
- Kingdom:
- phage
Quality
55.3
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 18-106
D2
high
residues 259-311
Domain cluster:
representative
CATH (28)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5es6A01 | 3.40.50.170 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Formyl transferase, N-terminal domain | 0.70 | 60.0 | 4.17e-01 | 100.0% | 50.0% |
| 4nv1E01 | 3.40.50.170 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Formyl transferase, N-terminal domain | 0.70 | 60.0 | 4.16e-01 | 100.0% | 50.0% |
| 4hkqA04 | 3.10.20.370 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.69 | 60.0 | 5.37e-01 | 100.0% | 77.6% |
| 2il5A00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.67 | 52.0 | 3.71e-01 | 84.9% | 87.0% |
| 1jkxA00 | 3.40.50.170 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Formyl transferase, N-terminal domain | 0.67 | 54.0 | 3.78e-01 | 100.0% | 35.4% |
| 5vyqA01 | 3.40.50.170 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Formyl transferase, N-terminal domain | 0.67 | 56.0 | 4.00e-01 | 100.0% | 52.5% |
| 4akrA01 | 3.30.1140.60 | Alpha Beta › 2-Layer Sandwich › Ribosomal protein S3 C-terminal domain › F-actin capping protein, alpha subunit | 0.66 | 40.0 | 3.16e-01 | 75.5% | 29.2% |
| 5uaiA01 | 3.40.50.170 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Formyl transferase, N-terminal domain | 0.65 | 53.0 | 3.72e-01 | 100.0% | 35.9% |
| 2blnA01 | 3.40.50.170 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Formyl transferase, N-terminal domain | 0.64 | 52.0 | 3.72e-01 | 100.0% | 49.0% |
| 1u04A04 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.64 | 54.0 | 3.63e-01 | 100.0% | 27.2% |
| 4hslA01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.63 | 50.0 | 3.68e-01 | 96.2% | 68.7% |
| 1skoB00 | 3.30.450.30 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic | 0.62 | 51.0 | 3.98e-01 | 94.3% | 42.2% |
| 1e3hA03 | 3.30.230.70 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › GHMP Kinase, N-terminal domain | 0.61 | 49.0 | 3.27e-01 | 88.7% | 63.4% |
| 1zvfB01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.59 | 48.0 | 3.58e-01 | 100.0% | 72.6% |
| 2ba1D01 | 3.30.230.70 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › GHMP Kinase, N-terminal domain | 0.56 | 46.0 | 3.08e-01 | 94.3% | 33.0% |
| 7yh1A01 | 3.30.450.30 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic | 0.56 | 43.0 | 3.47e-01 | 90.6% | 41.2% |
| 5xpyA02 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.55 | 43.0 | 3.52e-01 | 90.6% | 49.1% |
| 3fbuA00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.55 | 45.0 | 3.30e-01 | 100.0% | 72.9% |
| 1kfiA04 | 3.30.310.50 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Alpha-D-phosphohexomutase, C-terminal domain | 0.55 | 38.0 | 3.08e-01 | 79.2% | 87.2% |
| 2kr0A01 | 2.30.29.70 | Mainly Beta › Roll › PH-domain like › Proteasomal ubiquitin receptor Rpn13/ADRM1 | 0.54 | 42.0 | 3.42e-01 | 90.6% | 42.5% |
| 6qp9B01 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.54 | 45.0 | 2.69e-01 | 100.0% | 21.3% |
| 4hfqA02 | 3.90.79.10 | Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase | 0.54 | 39.0 | 3.06e-01 | 84.9% | 64.7% |
| 2nn6F00 | 3.30.230.70 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › GHMP Kinase, N-terminal domain | 0.54 | 41.0 | 2.91e-01 | 94.3% | 35.4% |
| 3h7lA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.53 | 43.0 | 3.72e-01 | 96.2% | 59.1% |
| 1y9kA01 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.51 | 40.0 | 3.21e-01 | 86.8% | 62.8% |
| 2p1jA01 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.51 | 39.0 | 3.07e-01 | 90.6% | 56.5% |
| 2z04B03 | 3.30.470.20 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain | 0.51 | 38.0 | 2.77e-01 | 88.7% | 84.4% |
| 2wp8B00 | 3.30.230.70 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › GHMP Kinase, N-terminal domain | 0.50 | 39.0 | 2.80e-01 | 100.0% | 32.3% |
ECOD (40)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3283209 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.71 | 61.0 | 4.95e-01 | 100.0% | 54.3% |
| 4382597 | 7571.1.1.1 ↗ | a/b three-layered sandwiches › Formyltransferase › Formyltransferase › Formyltransferase › Formyl_trans_N | 0.69 | 58.0 | 4.45e-01 | 100.0% | 57.8% |
| 4151832 | 7571.1.1.1 ↗ | a/b three-layered sandwiches › Formyltransferase › Formyltransferase › Formyltransferase › Formyl_trans_N | 0.69 | 57.0 | 3.95e-01 | 100.0% | 36.6% |
| 1503117 | 7571.1.1.1 ↗ | a/b three-layered sandwiches › Formyltransferase › Formyltransferase › Formyltransferase › Formyl_trans_N | 0.67 | 56.0 | 4.03e-01 | 100.0% | 52.6% |
| 4153005 | 7571.1.1.1 ↗ | a/b three-layered sandwiches › Formyltransferase › Formyltransferase › Formyltransferase › Formyl_trans_N | 0.66 | 55.0 | 3.78e-01 | 100.0% | 44.8% |
| 3289565 | 7571.1.1.1 ↗ | a/b three-layered sandwiches › Formyltransferase › Formyltransferase › Formyltransferase › Formyl_trans_N | 0.63 | 51.0 | 3.65e-01 | 100.0% | 47.5% |
| 4945290 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.63 | 54.0 | 5.23e-01 | 100.0% | 93.3% |
| 4025560 | 245.1.1.0 ↗ | a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 | 0.63 | 43.0 | 3.56e-01 | 81.1% | 40.0% |
| 3261977 | 245.1.1.1 ↗ | a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 › RNase_PH_C | 0.62 | 43.0 | 3.67e-01 | 81.1% | 44.7% |
| 3506831 | 245.1.1.0 ↗ | a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 | 0.62 | 43.0 | 3.72e-01 | 81.1% | 47.5% |
| 3315568 | 2484.1.1.67 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RVT_3 | 0.62 | 52.0 | 4.85e-01 | 100.0% | 80.0% |
| 3694730 | 7571.1.1.1 ↗ | a/b three-layered sandwiches › Formyltransferase › Formyltransferase › Formyltransferase › Formyl_trans_N | 0.61 | 50.0 | 3.59e-01 | 100.0% | 30.0% |
| 4995200 | 3407.1.1.2 ↗ | mixed a+b and a/b › Nop N-terminal domain › Nop N-terminal domain › Nop N-terminal domain › Nop5_56-rel_N_Arc | 0.60 | 50.0 | 4.02e-01 | 98.1% | 48.7% |
| 5045329 | 2484.1.1.38 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › eRF1_2 | 0.60 | 53.0 | 4.15e-01 | 100.0% | 49.6% |
| 3961639 | 5.1.10.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 12-bladed | 0.60 | 43.0 | 4.19e-01 | 79.2% | 91.7% |
| 3519147 | 5.1.4.61 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PAN2_N | 0.59 | 47.0 | 3.23e-01 | 94.3% | 32.1% |
| 5070445 | 2484.1.1.38 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › eRF1_2 | 0.59 | 52.0 | 4.02e-01 | 100.0% | 45.8% |
| 3222896 | 245.1.1.0 ↗ | a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 | 0.58 | 40.0 | 3.52e-01 | 81.1% | 47.5% |
| 3399617 | 245.1.1.1 ↗ | a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 › RNase_PH_C | 0.58 | 40.0 | 3.40e-01 | 81.1% | 42.2% |
| 3296644 | 5.1.4.266 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, Beta-prop_IFT122_1st | 0.58 | 46.0 | 2.90e-01 | 94.3% | 19.7% |
| 3643395 | 2484.1.1.38 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › eRF1_2 | 0.58 | 46.0 | 3.65e-01 | 98.1% | 44.4% |
| 3399251 | 245.1.1.1 ↗ | a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 › RNase_PH_C | 0.58 | 39.0 | 3.35e-01 | 81.1% | 42.2% |
| 3864913 | 218.1.1.2 ↗ | a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › Enolase_N | 0.58 | 50.0 | 3.61e-01 | 98.1% | 41.3% |
| 3801221 | 245.1.1.0 ↗ | a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 | 0.58 | 39.0 | 3.30e-01 | 81.1% | 40.0% |
| 3251163 | 245.1.1.1 ↗ | a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 › RNase_PH_C | 0.57 | 39.0 | 3.36e-01 | 81.1% | 42.2% |
| 3743243 | 245.1.1.1 ↗ | a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 › RNase_PH_C | 0.57 | 39.0 | 3.42e-01 | 81.1% | 44.7% |
| 4948698 | 2484.1.1.38 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › eRF1_2 | 0.57 | 50.0 | 3.90e-01 | 100.0% | 49.6% |
| 3249433 | 245.1.1.1 ↗ | a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 › RNase_PH_C | 0.57 | 39.0 | 3.37e-01 | 81.1% | 44.7% |
| 4932883 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.56 | 46.0 | 3.70e-01 | 98.1% | 44.8% |
| 4965603 | 213.1.1.1 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 | 0.56 | 48.0 | 3.50e-01 | 98.1% | 98.7% |
| 5026550 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.56 | 43.0 | 3.56e-01 | 92.5% | 44.3% |
| 3493061 | 883.1.1.7 ↗ | a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › MMM1 | 0.56 | 46.0 | 3.13e-01 | 88.7% | 43.8% |
| 4159425 | 2484.1.1.38 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › eRF1_2 | 0.56 | 43.0 | 3.47e-01 | 90.6% | 49.2% |
| 5050973 | 2484.1.1.38 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › eRF1_2 | 0.55 | 49.0 | 3.73e-01 | 100.0% | 45.6% |
| 3993139 | 5.1.3.113 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › BCAS3_WD40 | 0.55 | 46.0 | 3.20e-01 | 100.0% | 38.9% |
| 3582821 | 220.1.1.5 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PID | 0.53 | 39.0 | 3.35e-01 | 86.8% | 47.8% |
| 3832475 | 708.1.2.2 ↗ | beta complex topology › ETN0001 domain-like › ETN0001 domain-like › Mss4-like › SelR | 0.53 | 42.0 | 3.33e-01 | 100.0% | 54.8% |
| 3592666 | 213.1.1.0 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) | 0.52 | 42.0 | 2.98e-01 | 92.5% | 65.4% |
| 4067945 | 218.1.1.8 ↗ | a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › HrcA | 0.52 | 42.0 | 3.55e-01 | 100.0% | 81.0% |
| 5037522 | 7515.1.1.2 ↗ | a/b three-layered sandwiches › Alkaline phosphatase-like › Alkaline phosphatase-like › Alkaline phosphatase-like › Sulfatase | 0.51 | 42.0 | 2.47e-01 | 90.6% | 30.7% |