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LacPavin_0818_WC45_scaffold_30120_prodigal-single.1__X__X__00284
Bact-VirLacPavin_0818_WC45_scaffold_30120_prodigal-single.1__X__X__00284
Identity
- Kingdom:
- phage
Quality
92.8
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 6-86
Domain cluster:
representative
CATH (35)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3fajA00 | 1.20.120.950 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Uncharacterised protein DUF5062 | 0.74 | 53.0 | 4.91e-01 | 74.1% | 69.3% |
| 2oznB01 | 1.20.1270.90 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › AF1782-like | 0.73 | 56.0 | 5.64e-01 | 81.5% | 91.3% |
| 8d3mA02 | 1.20.120.920 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CRISPR-associated endonuclease Cas1, C-terminal domain | 0.73 | 58.0 | 4.11e-01 | 85.2% | 32.1% |
| 1dk8A02 | 1.10.167.10 | Mainly Alpha › Orthogonal Bundle › Regulator of G-protein Signalling 4; domain 2 › Regulator of G-protein Signalling 4, domain 2 | 0.72 | 52.0 | 5.12e-01 | 85.2% | 71.8% |
| 1y4cA03 | 1.20.120.660 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › IL-4 antagonist (De novo design) like domain | 0.71 | 56.0 | 5.04e-01 | 85.2% | 66.4% |
| 2gf4A00 | 1.20.1270.110 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Uncharacterised protein family UPF0058 | 0.70 | 52.0 | 5.07e-01 | 84.0% | 72.7% |
| 4e40A00 | 1.20.1260.80 | Mainly Alpha › Up-down Bundle › Ferritin › | 0.70 | 54.0 | 3.85e-01 | 84.0% | 78.8% |
| 2m6uA00 | 1.20.81.20 | Mainly Alpha › Up-down Bundle › Receptor-associated Protein › | 0.69 | 56.0 | 5.62e-01 | 87.7% | 97.6% |
| 1v4aA03 | 1.20.120.330 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 | 0.69 | 48.0 | 3.92e-01 | 72.8% | 75.8% |
| 5iduC03 | 1.20.140.10 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 | 0.68 | 52.0 | 4.23e-01 | 82.7% | 59.7% |
| 4hr1A00 | 1.20.1270.410 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.67 | 51.0 | 4.60e-01 | 84.0% | 79.7% |
| 2yfaB01 | 1.20.1440.210 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › | 0.66 | 52.0 | 4.61e-01 | 85.2% | 72.3% |
| 3m7gA02 | 1.10.8.1010 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.66 | 50.0 | 4.83e-01 | 82.7% | 85.3% |
| 1r2jA03 | 1.20.140.10 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 | 0.66 | 51.0 | 4.29e-01 | 85.2% | 63.2% |
| 1sxjB03 | 1.20.272.10 | Mainly Alpha › Up-down Bundle › Zinc Finger, Delta Prime; domain 3 › | 0.66 | 48.0 | 4.64e-01 | 81.5% | 68.5% |
| 2wyhB04 | 1.20.1270.50 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Glycoside hydrolase family 38, central domain | 0.66 | 55.0 | 5.14e-01 | 92.6% | 85.1% |
| 7oq4Z01 | 1.20.120.950 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Uncharacterised protein DUF5062 | 0.65 | 49.0 | 4.66e-01 | 81.5% | 78.6% |
| 2oezA02 | 1.10.3900.10 | Mainly Alpha › Orthogonal Bundle › YacF-like › YacF-like | 0.64 | 48.0 | 3.84e-01 | 80.2% | 70.6% |
| 2p6vA00 | 1.20.120.1110 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › TAFH/NHR1 domain | 0.64 | 44.0 | 4.21e-01 | 85.2% | 60.8% |
| 1k32A03 | 3.30.750.44 | Alpha Beta › 2-Layer Sandwich › Transcription Regulator spoIIAA › | 0.63 | 47.0 | 4.93e-01 | 87.7% | 91.7% |
| 3ieeA02 | 1.20.58.820 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Uncharacterised protein PF12889, C-terminal DUF3829 | 0.62 | 46.0 | 4.30e-01 | 79.0% | 73.8% |
| 2p11A02 | 1.10.286.50 | Mainly Alpha › Orthogonal Bundle › GTP Cyclohydrolase I; Chain A, domain 1 › | 0.61 | 40.0 | 4.15e-01 | 70.4% | 73.0% |
| 1b68A00 | 1.20.120.20 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Apolipoprotein | 0.59 | 45.0 | 3.87e-01 | 84.0% | 75.4% |
| 3nz4B03 | 1.10.274.20 | Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › Phenylalanine ammonia-lyase 1; domain 3 | 0.59 | 45.0 | 4.14e-01 | 81.5% | 78.8% |
| 2hfiA00 | 1.20.120.440 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › YppE-like | 0.58 | 45.0 | 3.93e-01 | 84.0% | 61.8% |
| 3a06B03 | 1.10.1740.10 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif | 0.57 | 47.0 | 4.68e-01 | 93.8% | 90.9% |
| 3jr1A02 | 3.90.1200.10 | Alpha Beta › Alpha-Beta Complex › Aminoglycoside 3'-phosphotransferase; Chain: A, domain 2 › Aminoglycoside phosphotransferase (APH), C-terminal lobe | 0.57 | 46.0 | 3.62e-01 | 95.1% | 73.1% |
| 1te2A02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.54 | 33.0 | 3.51e-01 | 82.7% | 68.1% |
| 2igsA00 | 1.10.3690.10 | Mainly Alpha › Orthogonal Bundle › PA2222-like fold › PA2222-like domain | 0.53 | 46.0 | 3.43e-01 | 97.5% | 97.2% |
| 2kiwA01 | 1.10.150.130 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain | 0.53 | 41.0 | 4.07e-01 | 87.7% | 79.1% |
| 1td6A03 | 1.10.472.40 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Hypothetical protein mg237 homolog; domain 3 | 0.52 | 43.0 | 4.18e-01 | 95.1% | 87.0% |
| 6g94A00 | 1.20.950.20 | Mainly Alpha › Up-down Bundle › Fumarate Reductase Cytochrome B subunit › Transmembrane di-heme cytochromes, Chain C | 0.52 | 37.0 | 2.96e-01 | 74.1% | 65.7% |
| 1wnvB00 | 1.20.910.10 | Mainly Alpha › Up-down Bundle › Heme Oxygenase; Chain A › Heme oxygenase-like | 0.51 | 39.0 | 2.96e-01 | 84.0% | 66.2% |
| 3milB00 | 3.40.50.1110 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase | 0.51 | 44.0 | 3.20e-01 | 97.5% | 85.7% |
| 1ujnA02 | 1.20.1090.10 | Mainly Alpha › Up-down Bundle › Dehydroquinate synthase-like, alpha domain › Dehydroquinate synthase-like - alpha domain | 0.50 | 41.0 | 3.42e-01 | 97.5% | 92.3% |
ECOD (36)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3634546 | 632.15.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Staphylococcal complement inhibitor (SCIN) › Staphylococcal complement inhibitor (SCIN) | 0.76 | 60.0 | 6.25e-01 | 85.2% | 93.3% |
| 4243491 | 632.24.1.4 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › GBS CAMP factor C-terminal domain › GBS CAMP factor C-terminal domain › FIVAR | 0.76 | 60.0 | 6.27e-01 | 85.2% | 96.0% |
| 4367113 | 632.22.1.1 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats › EzrA | 0.75 | 58.0 | 5.35e-01 | 84.0% | 78.1% |
| 3573590 | 632.22.1.1 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats › EzrA | 0.74 | 58.0 | 5.38e-01 | 84.0% | 82.0% |
| 3589798 | 632.1.1.14 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Families 57/38 glycoside transferase middle domain › Families 57/38 glycoside transferase middle domain › EzrA | 0.72 | 57.0 | 5.42e-01 | 85.2% | 87.4% |
| 3889386 | 4177.2.1.2 ↗ | alpha duplicates or obligate multimers › BAR/IMD domain-like › Inhibitor of kappaB kinase beta dimerization domain › Inhibitor of kappaB kinase beta dimerization domain › IKBKB_SDD | 0.72 | 56.0 | 3.86e-01 | 84.0% | 65.4% |
| 5068160 | 601.3.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › Histidine-containing phosphotransfer domain, HPT domain › Histidine-containing phosphotransfer domain, HPT domain | 0.72 | 65.0 | 5.80e-01 | 98.8% | 69.6% |
| 4371507 | 632.22.1.1 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats › EzrA | 0.72 | 56.0 | 5.34e-01 | 84.0% | 86.3% |
| 3251304 | 601.1.2.0 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › I/LWEQ domain (Pfam 01608) | 0.72 | 57.0 | 5.15e-01 | 85.2% | 70.0% |
| 3906003 | 4177.2.1.1 ↗ | alpha duplicates or obligate multimers › BAR/IMD domain-like › Inhibitor of kappaB kinase beta dimerization domain › Inhibitor of kappaB kinase beta dimerization domain › TBK1_CCD1 | 0.72 | 56.0 | 3.86e-01 | 84.0% | 72.4% |
| 4653531 | 632.1.1.14 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Families 57/38 glycoside transferase middle domain › Families 57/38 glycoside transferase middle domain › EzrA | 0.72 | 57.0 | 5.14e-01 | 85.2% | 75.5% |
| 3706915 | 632.7.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain | 0.71 | 50.0 | 5.31e-01 | 72.8% | 84.3% |
| 4010964 | 192.29.1.102 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › Fung_rhodopsin | 0.70 | 56.0 | 4.88e-01 | 87.7% | 80.8% |
| 3420431 | 632.7.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain | 0.69 | 54.0 | 5.37e-01 | 84.0% | 80.0% |
| 3896767 | 632.22.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats | 0.69 | 51.0 | 5.24e-01 | 82.7% | 84.0% |
| 3647455 | 633.4.1.0 ↗ | alpha bundles › Bromodomain-like › Plant invertase/pectin methylesterase inhibitor › Plant invertase/pectin methylesterase inhibitor | 0.69 | 54.0 | 4.27e-01 | 85.2% | 46.1% |
| 3955772 | 632.15.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Staphylococcal complement inhibitor (SCIN) › Staphylococcal complement inhibitor (SCIN) | 0.68 | 53.0 | 5.16e-01 | 84.0% | 88.9% |
| 3413983 | 2008.1.1.94 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › DUF5614 | 0.68 | 53.0 | 4.06e-01 | 84.0% | 55.3% |
| 4288630 | 603.1.1.153 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins › DGCcoil | 0.68 | 44.0 | 4.00e-01 | 72.8% | 47.0% |
| 3514217 | 632.1.1.3 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Families 57/38 glycoside transferase middle domain › Families 57/38 glycoside transferase middle domain › Alpha-mann_mid | 0.68 | 55.0 | 5.24e-01 | 88.9% | 88.4% |
| 3228914 | 632.7.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain | 0.67 | 50.0 | 4.12e-01 | 81.5% | 42.6% |
| 4367522 | 601.14.1.12 ↗ | alpha bundles › Four-helical up-and-down bundle › Hemerythrin › Hemerythrin › Rab3-GAP_cat_C | 0.67 | 52.0 | 4.19e-01 | 85.2% | 44.4% |
| 2323976 | 1198.1.1.0 ↗ | alpha bundles › BTA121 › BTA121 › BTA121 | 0.67 | 57.0 | 4.86e-01 | 97.5% | 96.4% |
| 3611584 | 3050.1.1.0 ↗ | alpha bundles › Ribosomal protein L19 (L19e) C-terminal domain › Ribosomal protein L19 (L19e) C-terminal domain › Ribosomal protein L19 (L19e) C-terminal domain | 0.66 | 52.0 | 4.27e-01 | 87.7% | 46.5% |
| 3913850 | 601.19.1.5 ↗ | alpha bundles › Four-helical up-and-down bundle › Apolipoprotein › Apolipoprotein › PBC (DEPRECATED) | 0.64 | 50.0 | 4.39e-01 | 86.4% | 78.4% |
| 3361214 | 4006.1.1.1 ↗ | alpha bundles › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › PCRF | 0.64 | 48.0 | 4.23e-01 | 84.0% | 87.7% |
| 5054427 | 109.3.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat | 0.62 | 54.0 | 4.51e-01 | 100.0% | 58.6% |
| 4009548 | 5086.1.1.0 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins | 0.61 | 43.0 | 3.50e-01 | 74.1% | 85.0% |
| 3196010 | 3930.1.1.15 ↗ | alpha bundles › Helical bundle insertion in helicase domains › Helical bundle in Hef helicase › Helical bundle in Hef helicase › DEAD, Helicase_C | 0.60 | 53.0 | 3.31e-01 | 100.0% | 45.5% |
| 3973823 | 191.1.1.0 ↗ | alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain | 0.60 | 41.0 | 3.73e-01 | 71.6% | 90.9% |
| 4234479 | 3694.1.1.2 ↗ | alpha bundles › Tail specific protease helical domain › Tail specific protease helical domain › Tail specific protease helical domain › Tricorn_C1 | 0.58 | 44.0 | 4.35e-01 | 86.4% | 78.8% |
| 3955184 | 3831.1.1.1 ↗ | alpha bundles › Secreted protein of unknown function DUF1311 › Secreted protein of unknown function DUF1311 › Secreted protein of unknown function DUF1311 › LprI | 0.58 | 49.0 | 4.86e-01 | 98.8% | 100.0% |
| None | — | 0.58 | 48.0 | 3.04e-01 | 93.8% | 23.4% | |
| 1548122 | 601.43.1.1 ↗ | alpha bundles › Four-helical up-and-down bundle › Biofilm formation modulator YmoB › Biofilm formation modulator YmoB › YbaJ | 0.57 | 45.0 | 3.99e-01 | 87.7% | 63.9% |
| 3532518 | 148.1.3.206 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › PF31015 | 0.55 | 46.0 | 4.50e-01 | 97.5% | 89.8% |
| 3689215 | 316.1.1.11 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › GrpB | 0.50 | 43.0 | 3.40e-01 | 100.0% | 91.4% |