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LacPavin_0818_WC45_scaffold_30120_prodigal-single.1__X__X__00289
Bact-VirLacPavin_0818_WC45_scaffold_30120_prodigal-single.1__X__X__00289
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 107-183
Domain cluster:
rep: KU234533.1__AND75613.1__X__00037__D26-97
CATH (21)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2xk0A00 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.79 | 49.0 | 5.14e-01 | 100.0% | 69.6% |
| 2mysA01 | 2.30.30.360 | Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal | 0.75 | 45.0 | 5.54e-01 | 98.7% | 95.8% |
| 2lccA00 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.71 | 51.0 | 5.21e-01 | 98.7% | 76.3% |
| 4ld6A00 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.71 | 52.0 | 4.48e-01 | 100.0% | 50.4% |
| 2l89A00 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.68 | 51.0 | 4.55e-01 | 100.0% | 56.5% |
| 3teeA02 | 2.30.30.760 | Mainly Beta › Roll › SH3 type barrels. › | 0.67 | 46.0 | 4.70e-01 | 98.7% | 74.0% |
| 1iz6A01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.66 | 47.0 | 4.94e-01 | 100.0% | 82.6% |
| 2hbpA00 | 2.30.30.700 | Mainly Beta › Roll › SH3 type barrels. › SLA1 homology domain 1 | 0.65 | 41.0 | 4.35e-01 | 96.1% | 72.7% |
| 1ixdA00 | 2.30.30.190 | Mainly Beta › Roll › SH3 type barrels. › CAP Gly-rich-like domain | 0.64 | 55.0 | 4.93e-01 | 100.0% | 69.2% |
| 1whmA01 | 2.30.30.190 | Mainly Beta › Roll › SH3 type barrels. › CAP Gly-rich-like domain | 0.60 | 51.0 | 5.29e-01 | 94.8% | 98.6% |
| 1vwxZ00 | 2.30.30.770 | Mainly Beta › Roll › SH3 type barrels. › | 0.55 | 50.0 | 4.15e-01 | 100.0% | 57.8% |
| 4p2iA00 | 3.30.1520.10 | Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain | 0.55 | 39.0 | 3.42e-01 | 75.3% | 72.6% |
| 3kf8A00 | 2.40.50.1040 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.54 | 42.0 | 3.12e-01 | 84.4% | 51.2% |
| 6gp1A00 | 3.30.1300.40 | Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › | 0.54 | 30.0 | 3.23e-01 | 70.1% | 61.5% |
| 2bi0A01 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.54 | 47.0 | 3.73e-01 | 96.1% | 92.2% |
| 2k75A01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.53 | 41.0 | 3.74e-01 | 84.4% | 77.7% |
| 3jscA00 | 2.30.30.110 | Mainly Beta › Roll › SH3 type barrels. › | 0.52 | 45.0 | 4.23e-01 | 98.7% | 77.1% |
| 2gefA01 | 2.30.42.30 | Mainly Beta › Roll › Pdz3 Domain › | 0.51 | 39.0 | 3.57e-01 | 87.0% | 73.2% |
| 3kh8A02 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.50 | 37.0 | 3.10e-01 | 77.9% | 91.0% |
| 3pnrA00 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.50 | 44.0 | 3.16e-01 | 100.0% | 40.4% |
| 3iuzA00 | 3.10.180.50 | Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › | 0.50 | 41.0 | 2.83e-01 | 96.1% | 79.7% |
ECOD (48)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4029093 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.86 | 58.0 | 4.45e-01 | 100.0% | 34.2% |
| 3198731 | 4.1.1.249 ↗ | beta barrels › SH3 › SH3 › SH3 › KOW2_Spt5 | 0.82 | 54.0 | 4.40e-01 | 100.0% | 40.0% |
| 4191690 | 4.1.1.98 ↗ | beta barrels › SH3 › SH3 › SH3 › ProQ_C | 0.79 | 48.0 | 5.46e-01 | 100.0% | 81.0% |
| 4084190 | 4.1.1.98 ↗ | beta barrels › SH3 › SH3 › SH3 › ProQ_C | 0.79 | 48.0 | 5.40e-01 | 100.0% | 79.7% |
| 140210 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.79 | 49.0 | 5.14e-01 | 100.0% | 69.6% |
| 3420348 | 4.1.1.306 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_VIII-1_N | 0.78 | 49.0 | 5.71e-01 | 100.0% | 89.1% |
| 3901117 | 4.8.1.6 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot | 0.77 | 48.0 | 3.58e-01 | 100.0% | 27.2% |
| 3326980 | 4.1.1.33 ↗ | beta barrels › SH3 › SH3 › SH3 › Myosin_N | 0.74 | 47.0 | 5.29e-01 | 100.0% | 83.3% |
| 3557649 | 4.8.1.20 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like › PWP3A-B_N | 0.73 | 53.0 | 4.73e-01 | 100.0% | 55.2% |
| 147797 | 4.8.1.6 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot | 0.71 | 51.0 | 5.45e-01 | 98.7% | 85.3% |
| 4027422 | 4.1.1.33 ↗ | beta barrels › SH3 › SH3 › SH3 › Myosin_N | 0.71 | 44.0 | 5.12e-01 | 100.0% | 89.1% |
| 3414063 | 4.1.1.233 ↗ | beta barrels › SH3 › SH3 › SH3 › Myosin_VII_N | 0.70 | 47.0 | 5.43e-01 | 100.0% | 98.2% |
| 145843 | 4.1.1.12 ↗ | beta barrels › SH3 › SH3 › SH3 › PWWP | 0.68 | 51.0 | 4.55e-01 | 100.0% | 56.5% |
| 4946993 | 4.1.1.479 ↗ | beta barrels › SH3 › SH3 › SH3 › eIF-5a | 0.68 | 48.0 | 5.04e-01 | 100.0% | 81.4% |
| 4068333 | 4.1.1.97 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF150_C | 0.67 | 47.0 | 5.04e-01 | 100.0% | 86.2% |
| 2157301 | 4.1.1.78 ↗ | beta barrels › SH3 › SH3 › SH3 › TTD | 0.66 | 48.0 | 4.96e-01 | 100.0% | 84.9% |
| 4171942 | 4.1.1.178 ↗ | beta barrels › SH3 › SH3 › SH3 › ribosomal_L24 | 0.65 | 56.0 | 5.06e-01 | 100.0% | 68.3% |
| 3997130 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.65 | 60.0 | 5.45e-01 | 100.0% | 84.0% |
| 3253267 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.65 | 50.0 | 4.85e-01 | 100.0% | 75.3% |
| 4997059 | 4.1.1.139 ↗ | beta barrels › SH3 › SH3 › SH3 › IF5A-like_N | 0.65 | 48.0 | 4.95e-01 | 100.0% | 81.3% |
| 5048974 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.65 | 52.0 | 4.59e-01 | 100.0% | 60.9% |
| 3553983 | 4.1.1.233 ↗ | beta barrels › SH3 › SH3 › SH3 › Myosin_VII_N | 0.65 | 44.0 | 4.95e-01 | 100.0% | 91.7% |
| 5028741 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.64 | 42.0 | 4.77e-01 | 100.0% | 94.5% |
| 3934278 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.63 | 53.0 | 4.54e-01 | 100.0% | 59.1% |
| 5080336 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.63 | 43.0 | 4.61e-01 | 100.0% | 85.9% |
| 3219409 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.63 | 57.0 | 5.44e-01 | 100.0% | 85.6% |
| 3554026 | 4.1.1.233 ↗ | beta barrels › SH3 › SH3 › SH3 › Myosin_VII_N | 0.63 | 43.0 | 4.75e-01 | 100.0% | 91.7% |
| 3473981 | 4.1.1.12 ↗ | beta barrels › SH3 › SH3 › SH3 › PWWP | 0.62 | 58.0 | 4.84e-01 | 100.0% | 66.4% |
| 5061147 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.62 | 51.0 | 4.79e-01 | 100.0% | 73.7% |
| 3439789 | 219.1.1.0 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases | 0.61 | 54.0 | 4.16e-01 | 100.0% | 61.1% |
| 3297966 | 4.25.1.2 ↗ | beta barrels › SH3 › Auxin response factor dimerization domain and ancillary domain › Auxin response factor dimerization domain and ancillary domain › BRWD_AD | 0.60 | 54.0 | 4.69e-01 | 100.0% | 77.5% |
| 4078549 | 4.1.1.38 ↗ | beta barrels › SH3 › SH3 › SH3 › Ribosomal_L2_C | 0.60 | 42.0 | 3.43e-01 | 100.0% | 38.0% |
| 3482706 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.60 | 55.0 | 4.20e-01 | 100.0% | 52.9% |
| 4432457 | 4.1.1.97 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF150_C | 0.60 | 44.0 | 4.66e-01 | 100.0% | 87.1% |
| 4055111 | 4.1.1.7 ↗ | beta barrels › SH3 › SH3 › SH3 › KOW,ribosomal_L24 | 0.59 | 55.0 | 4.62e-01 | 100.0% | 64.8% |
| 3616007 | 4.1.1.233 ↗ | beta barrels › SH3 › SH3 › SH3 › Myosin_VII_N | 0.59 | 39.0 | 4.45e-01 | 100.0% | 96.4% |
| 4157193 | 4.1.1.97 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF150_C | 0.58 | 43.0 | 4.50e-01 | 100.0% | 88.6% |
| 4093911 | 4.1.1.97 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF150_C | 0.58 | 42.0 | 4.32e-01 | 100.0% | 81.3% |
| 3650798 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.57 | 52.0 | 4.50e-01 | 100.0% | 68.7% |
| 3501834 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.56 | 49.0 | 4.79e-01 | 98.7% | 85.9% |
| 5022323 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.56 | 43.0 | 4.65e-01 | 94.8% | 95.4% |
| 3881192 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.56 | 46.0 | 3.65e-01 | 100.0% | 42.4% |
| 3492173 | 219.1.1.4 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C2 | 0.56 | 50.0 | 3.22e-01 | 100.0% | 33.6% |
| 3371134 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.56 | 51.0 | 4.34e-01 | 100.0% | 67.5% |
| 3700747 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.55 | 47.0 | 4.55e-01 | 98.7% | 92.2% |
| 5018717 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.54 | 37.0 | 4.22e-01 | 88.3% | 100.0% |
| 3481729 | 4.11.1.2 ↗ | beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S26 | 0.54 | 49.0 | 4.18e-01 | 100.0% | 65.8% |
| 3981111 | 1.1.7.89 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF26002 | 0.51 | 43.0 | 3.48e-01 | 100.0% | 47.1% |
D2
medium
residues 3-104_188-224
Domain cluster:
representative
CATH (12)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1nlxA00 | 1.20.120.320 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Group V grass pollen allergen | 0.68 | 29.0 | 3.34e-01 | 78.4% | 51.9% |
| 4i8qA01 | 3.40.605.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 | 0.65 | 40.0 | 3.10e-01 | 77.7% | 28.1% |
| 2ktmA00 | 1.10.790.10 | Mainly Alpha › Orthogonal Bundle › Major Prion Protein › Prion/Doppel protein, beta-ribbon domain | 0.65 | 33.0 | 4.41e-01 | 96.4% | 97.1% |
| 4iggA01 | 1.10.287.160 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat | 0.59 | 28.0 | 3.95e-01 | 77.7% | 92.5% |
| 1zpyA00 | 6.10.140.1960 | Special › Helix non-globular › Helix Hairpins › | 0.56 | 30.0 | 3.63e-01 | 94.2% | 78.0% |
| 2lw1A00 | 1.10.287.380 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Valyl-tRNA synthetase, C-terminal domain | 0.56 | 30.0 | 3.80e-01 | 79.1% | 85.9% |
| 1sumB01 | 1.20.58.220 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 | 0.53 | 33.0 | 3.74e-01 | 82.0% | 81.3% |
| 2lm9A00 | 1.20.58.970 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.52 | 33.0 | 3.92e-01 | 82.7% | 91.7% |
| 5kdiA00 | 1.10.3520.10 | Mainly Alpha › Orthogonal Bundle › Glycolipid transfer protein, GLTP › Glycolipid transfer protein | 0.52 | 41.0 | 3.56e-01 | 82.0% | 91.9% |
| 5ziyA01 | 1.20.1330.10 | Mainly Alpha › Up-down Bundle › f41 fragment of flagellin, N-terminal domain › f41 fragment of flagellin, N-terminal domain | 0.51 | 37.0 | 3.32e-01 | 87.8% | 53.1% |
| 1ydxA02 | 1.10.287.1120 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Bipartite methylase S protein | 0.51 | 32.0 | 3.90e-01 | 98.6% | 96.7% |
| 1upqA00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.50 | 27.0 | 3.04e-01 | 95.0% | 66.4% |
ECOD (14)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4540106 | 3396.1.1.3 ↗ | extended segments › HIG1 domain family member 1A › HIG1 domain family member 1A › HIG1 domain family member 1A › DUF4481 | 0.79 | 45.0 | 5.89e-01 | 80.6% | 97.5% |
| 3929290 | 614.1.1.0 ↗ | alpha duplicates or obligate multimers › L27 domain › L27 domain › L27 domain | 0.79 | 30.0 | 4.28e-01 | 79.1% | 71.4% |
| 3197575 | 2.1.1.1 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosom_S12_S23 | 0.67 | 28.0 | 3.43e-01 | 84.9% | 58.9% |
| 3665480 | 109.4.1.1559 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Tic110 | 0.66 | 38.0 | 2.97e-01 | 81.3% | 27.1% |
| 3598977 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.61 | 37.0 | 4.61e-01 | 100.0% | 97.6% |
| 3520009 | 192.2.1.0 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin | 0.60 | 32.0 | 4.10e-01 | 82.0% | 88.7% |
| 3273217 | 604.12.1.0 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain | 0.58 | 32.0 | 3.83e-01 | 82.0% | 80.0% |
| 3784861 | 220.1.1.74 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PIG-H | 0.57 | 35.0 | 3.67e-01 | 98.6% | 65.4% |
| 3955928 | 7525.1.1.1 ↗ | a/b three-layered sandwiches › Phosphoglycerate mutase-like › Phosphoglycerate mutase-like › Phosphoglycerate mutase-like › His_Phos_1 | 0.57 | 42.0 | 3.33e-01 | 76.3% | 100.0% |
| 5057325 | 604.39.1.3 ↗ | alpha bundles › Spectrin repeat-like › S-component of energy-coupling factor (ECF) transporters › S-component of energy-coupling factor (ECF) transporters › ECF-ribofla_trS | 0.57 | 41.0 | 3.66e-01 | 73.4% | 86.8% |
| 3489971 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.55 | 34.0 | 3.66e-01 | 97.8% | 70.8% |
| 4994410 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.52 | 30.0 | 3.61e-01 | 96.4% | 89.4% |
| 3481723 | 214.1.1.1 ↗ | a+b two layers › SH2 › SH2 › SH2 › SH2 | 0.51 | 30.0 | 3.27e-01 | 76.3% | 68.7% |
| 3677854 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.51 | 41.0 | 2.81e-01 | 87.8% | 73.8% |