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LacPavin_0818_WC45_scaffold_30120_prodigal-single.1__X__X__00292
Bact-VirLacPavin_0818_WC45_scaffold_30120_prodigal-single.1__X__X__00292
Identity
- Kingdom:
- phage
Quality
75.0
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 4-96
Domain cluster:
rep: BML_coassembly_scaffold_37_prodigal-single.1__X__X__00015__D2-73
CATH (15)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1ln0A00 | 3.40.1440.10 | Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › GIY-YIG endonuclease | 0.77 | 68.0 | 6.93e-01 | 95.7% | 100.0% |
| 4dohE02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.73 | 38.0 | 3.70e-01 | 73.1% | 45.3% |
| 4eq3A02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.71 | 42.0 | 3.98e-01 | 77.4% | 50.9% |
| 3h20A01 | 3.30.1490.240 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › RepB DNA-primase, N-terminal domain | 0.68 | 37.0 | 4.32e-01 | 74.2% | 75.8% |
| 3ir9A02 | 3.30.1330.30 | Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Ribosomal protein L30/S12 | 0.67 | 40.0 | 3.66e-01 | 80.6% | 45.0% |
| 2pn5A03 | 2.60.40.1940 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.62 | 38.0 | 3.67e-01 | 73.1% | 53.3% |
| 1dgsA02 | 3.30.1490.70 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › | 0.62 | 31.0 | 3.13e-01 | 93.5% | 45.3% |
| 5utkA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.59 | 34.0 | 3.59e-01 | 81.7% | 61.4% |
| 2jvuA00 | 2.60.40.2290 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.57 | 34.0 | 3.42e-01 | 73.1% | 55.1% |
| 3bpnC03 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.57 | 38.0 | 3.78e-01 | 81.7% | 64.4% |
| 3ba3B00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.57 | 39.0 | 3.42e-01 | 77.4% | 46.2% |
| 3ijfX00 | 3.40.140.10 | Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 | 0.55 | 33.0 | 3.07e-01 | 73.1% | 46.3% |
| 4ffeX00 | 3.30.500.10 | Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like | 0.55 | 42.0 | 3.64e-01 | 83.9% | 90.7% |
| 2ypjA00 | 2.60.120.1070 | Mainly Beta › Sandwich › Jelly Rolls › | 0.54 | 34.0 | 3.17e-01 | 77.4% | 47.5% |
| 3rp6A02 | 3.30.9.30 | Alpha Beta › 2-Layer Sandwich › D-Amino Acid Oxidase; Chain A, domain 2 › | 0.53 | 44.0 | 3.41e-01 | 93.5% | 53.4% |
ECOD (20)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4344289 | 821.1.1.1 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG | 0.78 | 70.0 | 6.14e-01 | 94.6% | 70.8% |
| 77927 | 821.1.1.1 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG | 0.77 | 68.0 | 6.85e-01 | 94.6% | 96.8% |
| 3215217 | 821.1.1.7 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › LEM-3_GIY-YIG | 0.71 | 63.0 | 5.12e-01 | 94.6% | 65.5% |
| 5028854 | 301.1.1.2 ↗ | a+b three layers › Bacillus chorismate mutase-like › L30e-like › L30e-like › eRF1_3 | 0.69 | 42.0 | 3.67e-01 | 80.6% | 40.3% |
| 3256398 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.69 | 42.0 | 4.21e-01 | 81.7% | 60.0% |
| 4956437 | 301.1.1.2 ↗ | a+b three layers › Bacillus chorismate mutase-like › L30e-like › L30e-like › eRF1_3 | 0.67 | 39.0 | 3.44e-01 | 80.6% | 39.3% |
| 4651815 | 821.1.1.1 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG | 0.66 | 55.0 | 4.41e-01 | 90.3% | 54.4% |
| 3478944 | 821.1.1.0 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease | 0.63 | 53.0 | 5.18e-01 | 94.6% | 100.0% |
| 3730441 | 4121.1.1.0 ↗ | a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like | 0.63 | 51.0 | 3.40e-01 | 87.1% | 48.3% |
| 3574971 | 382.1.1.0 ↗ | few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like | 0.62 | 35.0 | 4.34e-01 | 74.2% | 100.0% |
| 5053865 | 821.1.1.0 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease | 0.62 | 47.0 | 4.77e-01 | 86.0% | 84.4% |
| 3392943 | 11.1.1.2 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 | 0.60 | 38.0 | 3.28e-01 | 77.4% | 40.7% |
| 3404684 | 10.12.1.84 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › VKGC_lumenal_dom | 0.57 | 43.0 | 3.32e-01 | 80.6% | 88.1% |
| 3694265 | 1.1.7.7 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6 | 0.56 | 39.0 | 3.49e-01 | 73.1% | 54.1% |
| 3579386 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.56 | 39.0 | 3.74e-01 | 81.7% | 63.8% |
| 3738951 | 11.1.1.642 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig-like_Pom152_1 | 0.53 | 36.0 | 3.44e-01 | 74.2% | 60.0% |
| 4063439 | 7579.1.1.25 ↗ | a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › FSH1 | 0.52 | 41.0 | 3.03e-01 | 88.2% | 98.9% |
| 3801678 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.51 | 38.0 | 3.56e-01 | 82.8% | 79.2% |
| 3637819 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.51 | 37.0 | 3.44e-01 | 77.4% | 63.3% |
| 3929359 | 382.1.1.0 ↗ | few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like | 0.50 | 37.0 | 3.51e-01 | 77.4% | 84.4% |
D2
high
residues 134-192
Domain cluster:
representative
CATH (3)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1u3eM02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.54 | 36.0 | 3.55e-01 | 71.2% | 94.1% |
| 2dulA01 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.52 | 36.0 | 2.31e-01 | 72.9% | 47.4% |
| 3weeA01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.51 | 35.0 | 2.50e-01 | 72.9% | 30.6% |
ECOD (9)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3289318 | 6019.1.1.0 ↗ | a+b two layers › C-terminal domain of bypass of forespore C, BofC › C-terminal domain of bypass of forespore C, BofC › C-terminal domain of bypass of forespore C, BofC | 0.66 | 48.0 | 4.07e-01 | 74.6% | 69.5% |
| 5078363 | 2003.1.5.19 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › TRM | 0.61 | 43.0 | 2.64e-01 | 74.6% | 30.5% |
| 3992061 | 11.1.1.29 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › TIG | 0.61 | 46.0 | 3.30e-01 | 83.1% | 61.7% |
| 4940302 | 2003.1.5.19 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › TRM | 0.61 | 43.0 | 2.67e-01 | 74.6% | 33.2% |
| 4999007 | 2002.4.1.2 ↗ | a/b barrels › TIM beta/alpha-barrel › Nicotinate/Quinolinate PRTase C-terminal domain-like › Nicotinate/Quinolinate PRTase C-terminal domain-like › QRPTase_C | 0.58 | 46.0 | 2.97e-01 | 88.1% | 25.4% |
| None | — | 0.53 | 37.0 | 2.26e-01 | 72.9% | 47.1% | |
| 3601743 | 2003.1.5.19 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › TRM | 0.52 | 36.0 | 2.13e-01 | 72.9% | 35.3% |
| 3795121 | 4.1.1.110 ↗ | beta barrels › SH3 › SH3 › SH3 › Tudor_FRX1 | 0.51 | 36.0 | 3.57e-01 | 78.0% | 92.3% |
| 3621133 | 5.1.3.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed | 0.51 | 38.0 | 2.47e-01 | 83.1% | 43.1% |