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LacPavin_0818_WC45_scaffold_65992_prodigal-single.1__X__X__00008
Bact-VirLacPavin_0818_WC45_scaffold_65992_prodigal-single.1__X__X__00008
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 49-167
Domain cluster:
representative
CATH (8)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6fezA02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.57 | 39.0 | 4.31e-01 | 92.4% | 89.4% |
| 2b78A01 | 2.30.130.10 | Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › PUA domain | 0.56 | 32.0 | 4.05e-01 | 96.6% | 100.0% |
| 4rcmB00 | 3.10.590.10 | Alpha Beta › Roll › ph1033 like fold › ph1033 like domains | 0.55 | 49.0 | 4.48e-01 | 100.0% | 90.6% |
| 6ll8A02 | 3.10.310.20 | Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › DHHA2 domain | 0.54 | 38.0 | 3.84e-01 | 97.5% | 71.7% |
| 7tbdB02 | 2.40.70.10 | Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases | 0.53 | 44.0 | 4.00e-01 | 89.9% | 90.2% |
| 3c18A03 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.53 | 27.0 | 3.60e-01 | 84.0% | 100.0% |
| 2g5xA01 | 3.40.420.10 | Alpha Beta › 3-Layer(aba) Sandwich › Ricin (A subunit); domain 1 › Ricin (A subunit), domain 1 | 0.53 | 37.0 | 3.28e-01 | 97.5% | 50.0% |
| 3vx8A02 | 3.40.140.70 | Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Ubiquitin-like modifier-activating enzyme ATG7 N-terminal domain | 0.52 | 40.0 | 3.66e-01 | 96.6% | 60.4% |
ECOD (12)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5013306 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.77 | 62.0 | 5.65e-01 | 99.2% | 65.2% |
| 5011625 | 2008.1.1.57 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › VirArc_Nuclease | 0.69 | 53.0 | 4.50e-01 | 91.6% | 49.7% |
| 4960647 | 3535.1.1.0 ↗ | a+b two layers › Sex pheromone staph-cAM373 › Sex pheromone staph-cAM373 › Sex pheromone staph-cAM373 | 0.58 | 43.0 | 4.37e-01 | 95.8% | 80.0% |
| 4489860 | 2008.1.1.13 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › RecU | 0.57 | 43.0 | 3.89e-01 | 99.2% | 57.0% |
| 3627659 | 11.2.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain | 0.56 | 39.0 | 3.71e-01 | 100.0% | 59.3% |
| 5053513 | 2488.1.1.8 ↗ | a/b three-layered sandwiches › alpha/beta knot › alpha/beta knot › alpha/beta knot › Methyltrn_RNA_2 | 0.55 | 50.0 | 4.08e-01 | 98.3% | 57.2% |
| 4946981 | 2488.1.1.0 ↗ | a/b three-layered sandwiches › alpha/beta knot › alpha/beta knot › alpha/beta knot | 0.55 | 49.0 | 4.11e-01 | 95.8% | 59.5% |
| 3614611 | 3351.1.1.1 ↗ | a/b three-layered sandwiches › Atg7 N-terminal domain-like › N-terminal domain in E1 enzyme Atg7 › N-terminal domain in E1 enzyme Atg7 › ATG7_N | 0.55 | 41.0 | 3.71e-01 | 96.6% | 57.0% |
| 5075341 | 2488.1.1.8 ↗ | a/b three-layered sandwiches › alpha/beta knot › alpha/beta knot › alpha/beta knot › Methyltrn_RNA_2 | 0.54 | 48.0 | 4.08e-01 | 97.5% | 60.5% |
| 3718002 | 3351.1.1.1 ↗ | a/b three-layered sandwiches › Atg7 N-terminal domain-like › N-terminal domain in E1 enzyme Atg7 › N-terminal domain in E1 enzyme Atg7 › ATG7_N | 0.54 | 41.0 | 3.52e-01 | 96.6% | 50.5% |
| 3603294 | 242.1.1.7 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 | 0.53 | 36.0 | 3.99e-01 | 98.3% | 90.0% |
| 5041538 | 2488.1.1.8 ↗ | a/b three-layered sandwiches › alpha/beta knot › alpha/beta knot › alpha/beta knot › Methyltrn_RNA_2 | 0.53 | 46.0 | 3.97e-01 | 97.5% | 60.5% |