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LacPavin_0818_WC45_scaffold_65992_prodigal-single.1__X__X__00043
Bact-VirLacPavin_0818_WC45_scaffold_65992_prodigal-single.1__X__X__00043
Identity
- Kingdom:
- phage
Quality
71.9
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 113-218
D2
medium
residues 276-341
D3
medium
residues 744-799_865-918_937-1021
Domain cluster:
representative
CATH (30)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5m38C00 | 3.30.1330.60 | Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › OmpA-like domain | 0.73 | 43.0 | 5.61e-01 | 93.3% | 100.0% |
| 6aeoB01 | 3.30.1330.60 | Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › OmpA-like domain | 0.69 | 42.0 | 5.03e-01 | 93.3% | 87.4% |
| 4rhaA00 | 3.30.1330.60 | Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › OmpA-like domain | 0.69 | 46.0 | 5.51e-01 | 96.9% | 99.2% |
| 5hy0A01 | 3.30.1330.170 | Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Cyanuric acid hydrolase/Barbiturase, RU A | 0.68 | 37.0 | 4.96e-01 | 97.9% | 97.2% |
| 5wtpA00 | 3.30.1330.60 | Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › OmpA-like domain | 0.68 | 43.0 | 5.34e-01 | 95.4% | 100.0% |
| 3cypB00 | 3.30.1330.60 | Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › OmpA-like domain | 0.67 | 41.0 | 4.99e-01 | 93.8% | 91.5% |
| 3ec7A02 | 3.30.360.10 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 | 0.66 | 36.0 | 4.43e-01 | 96.9% | 83.6% |
| 3rc2A02 | 3.30.360.10 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 | 0.65 | 34.0 | 3.44e-01 | 98.5% | 50.5% |
| 1r1mA00 | 3.30.1330.60 | Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › OmpA-like domain | 0.63 | 44.0 | 5.15e-01 | 95.9% | 99.3% |
| 1lc0A02 | 3.30.360.10 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 | 0.62 | 36.0 | 4.14e-01 | 83.6% | 76.2% |
| 3c1aA02 | 3.30.360.10 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 | 0.61 | 35.0 | 4.01e-01 | 95.4% | 74.5% |
| 1cliB01 | 3.30.1330.10 | Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › PurM-like, N-terminal domain | 0.60 | 36.0 | 4.02e-01 | 99.0% | 74.7% |
| 1tltA02 | 3.30.360.10 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 | 0.60 | 35.0 | 3.63e-01 | 83.6% | 59.7% |
| 3v5nB02 | 3.30.360.10 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 | 0.60 | 36.0 | 3.72e-01 | 92.3% | 63.0% |
| 1dihA02 | 3.30.360.10 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 | 0.59 | 31.0 | 4.02e-01 | 90.8% | 88.9% |
| 3m2tA02 | 3.30.360.10 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 | 0.59 | 36.0 | 4.07e-01 | 82.6% | 78.3% |
| 3uuwB02 | 3.30.360.10 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 | 0.58 | 34.0 | 3.55e-01 | 83.6% | 60.3% |
| 6jw7A01 | 3.30.360.10 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 | 0.58 | 37.0 | 3.81e-01 | 82.1% | 67.0% |
| 1vk3A02 | 3.30.1330.10 | Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › PurM-like, N-terminal domain | 0.57 | 33.0 | 3.90e-01 | 99.0% | 81.5% |
| 4hadB02 | 3.30.360.10 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 | 0.57 | 33.0 | 3.34e-01 | 83.6% | 56.4% |
| 3o9zD02 | 3.30.360.10 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 | 0.56 | 36.0 | 3.74e-01 | 80.5% | 68.2% |
| 3euwA02 | 3.30.360.10 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 | 0.56 | 36.0 | 3.57e-01 | 83.1% | 59.2% |
| 3moiA02 | 3.30.360.10 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 | 0.55 | 45.0 | 4.42e-01 | 84.1% | 95.1% |
| 3dtyB02 | 3.30.360.10 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 | 0.54 | 33.0 | 3.43e-01 | 93.8% | 62.7% |
| 1evjC02 | 3.30.360.10 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 | 0.54 | 35.0 | 3.63e-01 | 92.3% | 69.6% |
| 3kizA01 | 3.30.1330.10 | Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › PurM-like, N-terminal domain | 0.53 | 37.0 | 4.26e-01 | 96.4% | 97.2% |
| 3byqA00 | 3.30.1330.110 | Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › BB2672 | 0.53 | 41.0 | 4.21e-01 | 97.4% | 82.7% |
| 3ip3A02 | 3.30.360.10 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 | 0.52 | 38.0 | 3.74e-01 | 83.6% | 71.4% |
| 1p9lA02 | 3.30.360.10 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 | 0.51 | 26.0 | 3.47e-01 | 91.8% | 88.8% |
| 3e9mB02 | 3.30.360.10 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 | 0.51 | 36.0 | 3.66e-01 | 84.6% | 71.2% |
ECOD (30)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3948407 | 301.3.1.1 ↗ | a+b three layers › Bacillus chorismate mutase-like › OmpA-like › OmpA-like › OmpA | 0.70 | 43.0 | 5.31e-01 | 94.9% | 94.4% |
| 4273645 | 301.3.1.1 ↗ | a+b three layers › Bacillus chorismate mutase-like › OmpA-like › OmpA-like › OmpA | 0.70 | 43.0 | 5.17e-01 | 95.9% | 87.7% |
| 2798263 | 301.3.1.1 ↗ | a+b three layers › Bacillus chorismate mutase-like › OmpA-like › OmpA-like › OmpA | 0.70 | 42.0 | 4.81e-01 | 94.9% | 78.5% |
| 3962237 | 301.3.1.0 ↗ | a+b three layers › Bacillus chorismate mutase-like › OmpA-like › OmpA-like | 0.69 | 41.0 | 5.35e-01 | 93.3% | 100.0% |
| 3385657 | 301.3.1.1 ↗ | a+b three layers › Bacillus chorismate mutase-like › OmpA-like › OmpA-like › OmpA | 0.69 | 42.0 | 5.32e-01 | 94.9% | 97.6% |
| None | — | 0.68 | 43.0 | 5.34e-01 | 95.4% | 100.0% | |
| 3386253 | 301.3.1.1 ↗ | a+b three layers › Bacillus chorismate mutase-like › OmpA-like › OmpA-like › OmpA | 0.67 | 42.0 | 4.89e-01 | 95.9% | 84.8% |
| 3630074 | 301.7.1.0 ↗ | a+b three layers › Bacillus chorismate mutase-like › YjgF-like › YjgF-like | 0.66 | 39.0 | 3.75e-01 | 97.9% | 51.6% |
| 3973393 | 301.3.1.1 ↗ | a+b three layers › Bacillus chorismate mutase-like › OmpA-like › OmpA-like › OmpA | 0.63 | 44.0 | 5.03e-01 | 96.9% | 92.0% |
| 5006372 | 301.2.1.0 ↗ | a+b three layers › Bacillus chorismate mutase-like › PurM N-terminal domain-like › PurM N-terminal domain-like | 0.63 | 35.0 | 4.21e-01 | 98.5% | 79.3% |
| 4990817 | 301.2.1.1 ↗ | a+b three layers › Bacillus chorismate mutase-like › PurM N-terminal domain-like › PurM N-terminal domain-like › AIRS | 0.63 | 35.0 | 4.10e-01 | 96.9% | 75.7% |
| 3967481 | 301.3.1.1 ↗ | a+b three layers › Bacillus chorismate mutase-like › OmpA-like › OmpA-like › OmpA | 0.62 | 43.0 | 4.87e-01 | 96.9% | 90.7% |
| 4443992 | 298.1.1.9 ↗ | a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › DapB_C | 0.61 | 30.0 | 4.05e-01 | 90.3% | 88.6% |
| 2773879 | 301.3.1.1 ↗ | a+b three layers › Bacillus chorismate mutase-like › OmpA-like › OmpA-like › OmpA | 0.60 | 44.0 | 5.06e-01 | 93.8% | 97.3% |
| 4047126 | 298.3.1.2 ↗ | a+b two layers › FwdE/GAPDH domain-like › Serine dehydratase beta chain-like › Serine dehydratase beta chain-like › PGDH_inter | 0.60 | 33.0 | 3.94e-01 | 86.7% | 78.5% |
| 4945622 | 301.2.1.1 ↗ | a+b three layers › Bacillus chorismate mutase-like › PurM N-terminal domain-like › PurM N-terminal domain-like › AIRS | 0.60 | 33.0 | 3.65e-01 | 97.9% | 65.8% |
| 3978730 | 298.1.1.20 ↗ | a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › YceM-like_C | 0.59 | 36.0 | 3.65e-01 | 84.6% | 60.0% |
| 4986395 | 298.1.1.24 ↗ | a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › GFO_IDH_MocA_C3 | 0.59 | 36.0 | 3.68e-01 | 84.1% | 60.5% |
| 6760 | 298.1.1.9 ↗ | a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › DapB_C | 0.59 | 31.0 | 3.98e-01 | 90.8% | 87.3% |
| 3981506 | 301.3.1.1 ↗ | a+b three layers › Bacillus chorismate mutase-like › OmpA-like › OmpA-like › OmpA | 0.59 | 44.0 | 4.86e-01 | 96.4% | 93.1% |
| 3733055 | 298.1.1.24 ↗ | a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › GFO_IDH_MocA_C3 | 0.58 | 36.0 | 3.67e-01 | 98.5% | 62.8% |
| 5025733 | 301.2.1.1 ↗ | a+b three layers › Bacillus chorismate mutase-like › PurM N-terminal domain-like › PurM N-terminal domain-like › AIRS | 0.58 | 28.0 | 3.94e-01 | 90.8% | 100.0% |
| 2798318 | 301.3.1.1 ↗ | a+b three layers › Bacillus chorismate mutase-like › OmpA-like › OmpA-like › OmpA | 0.58 | 42.0 | 4.74e-01 | 96.9% | 96.0% |
| 4318787 | 298.1.1.9 ↗ | a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › DapB_C | 0.57 | 29.0 | 3.68e-01 | 92.3% | 80.9% |
| 3942129 | 298.1.1.24 ↗ | a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › GFO_IDH_MocA_C3 | 0.56 | 37.0 | 3.61e-01 | 82.6% | 60.5% |
| 4164512 | 298.1.1.24 ↗ | a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › GFO_IDH_MocA_C3 | 0.56 | 37.0 | 3.60e-01 | 82.6% | 60.5% |
| 3839100 | 298.1.1.8 ↗ | a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › GFO_IDH_MocA_C | 0.55 | 35.0 | 4.16e-01 | 81.5% | 93.8% |
| 5048894 | 298.1.1.24 ↗ | a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › GFO_IDH_MocA_C3 | 0.55 | 39.0 | 4.03e-01 | 95.4% | 77.8% |
| 4938852 | 298.1.1.24 ↗ | a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › GFO_IDH_MocA_C3 | 0.52 | 38.0 | 3.70e-01 | 83.6% | 66.8% |
| 3508839 | 298.1.1.24 ↗ | a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › GFO_IDH_MocA_C3 | 0.52 | 38.0 | 3.60e-01 | 85.1% | 63.0% |
D4
medium
residues 800-864
Domain cluster:
representative
CATH (4)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2kp8A00 | 1.20.5.170 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.80 | 58.0 | 5.57e-01 | 75.4% | 73.6% |
| 1e3gA00 | 1.10.565.10 | Mainly Alpha › Orthogonal Bundle › Retinoid X Receptor › Retinoid X Receptor | 0.73 | 55.0 | 3.64e-01 | 81.5% | 20.8% |
| 2ouwB00 | 1.20.1290.10 | Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like | 0.59 | 43.0 | 3.41e-01 | 76.9% | 72.8% |
| 7wf8B01 | 1.10.167.10 | Mainly Alpha › Orthogonal Bundle › Regulator of G-protein Signalling 4; domain 2 › Regulator of G-protein Signalling 4, domain 2 | 0.51 | 40.0 | 3.27e-01 | 84.6% | 55.4% |
D5
medium
residues 1250-1350_1449-1491_1568-1609
Domain cluster:
representative
CATH (1)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1r8oB01 | 2.30.30.480 | Mainly Beta › Roll › SH3 type barrels. › | 0.52 | 15.0 | 2.51e-01 | 79.6% | 68.2% |