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LacPavin_0818_WC45_scaffold_65992_prodigal-single.1__X__X__00078
Bact-VirLacPavin_0818_WC45_scaffold_65992_prodigal-single.1__X__X__00078
Identity
- Kingdom:
- phage
Quality
86.5
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 195-333
Domain cluster:
rep: RifSed_csp1_19ft_3_scaffold_4_curated_prodigal-single.1__X__X__00726__D28-143
D2
medium
residues 1-74_153-194
Domain cluster:
representative
CATH (7)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3k7dA01 | 1.20.120.1510 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.62 | 31.0 | 3.18e-01 | 71.6% | 46.0% |
| 1irxA05 | 1.10.10.350 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.56 | 39.0 | 4.28e-01 | 85.3% | 89.2% |
| 1dulA00 | 1.10.260.30 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › Signal recognition particle, SRP54 subunit, M-domain | 0.53 | 30.0 | 3.68e-01 | 89.7% | 92.6% |
| 2a3qA00 | 1.10.287.1080 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like | 0.52 | 28.0 | 2.88e-01 | 94.0% | 51.3% |
| 6lccA01 | 1.10.600.10 | Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase | 0.52 | 42.0 | 3.03e-01 | 88.8% | 56.8% |
| 3h20A04 | 1.10.1240.50 | Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › | 0.52 | 33.0 | 3.70e-01 | 81.0% | 84.3% |
| 7wf8B01 | 1.10.167.10 | Mainly Alpha › Orthogonal Bundle › Regulator of G-protein Signalling 4; domain 2 › Regulator of G-protein Signalling 4, domain 2 | 0.51 | 37.0 | 3.66e-01 | 80.2% | 71.9% |
ECOD (3)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4996944 | 3447.1.1.4 ↗ | alpha bundles › Isoprenylcysteine carboxyl methyltransferase (ICMT) › Isoprenylcysteine carboxyl methyltransferase (ICMT) › Isoprenylcysteine carboxyl methyltransferase (ICMT) › PEMT | 0.55 | 32.0 | 2.97e-01 | 95.7% | 41.9% |
| 3526497 | 4033.1.1.5 ↗ | alpha arrays › Acyl-CoA dehydrogenase N-terminal domain-like › Acyl-CoA dehydrogenase N-terminal domain-like › Acyl-CoA dehydrogenase N-terminal domain-like › Acyl-CoA_ox_N | 0.53 | 37.0 | 3.57e-01 | 72.4% | 63.7% |
| 4974157 | 604.39.1.1 ↗ | alpha bundles › Spectrin repeat-like › S-component of energy-coupling factor (ECF) transporters › S-component of energy-coupling factor (ECF) transporters › CbiM | 0.50 | 43.0 | 3.72e-01 | 94.0% | 88.9% |
D3
medium
residues 75-152
Domain cluster:
rep: MW960030.1__QWY82978.1__X__00024__D5-103