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LacPavin_0818_WC45_scaffold_65992_prodigal-single.1__X__X__00108
Bact-VirLacPavin_0818_WC45_scaffold_65992_prodigal-single.1__X__X__00108
Identity
- Kingdom:
- phage
Quality
86.2
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 102-179
Domain cluster:
rep: NC_070786.1__YP_010652368.1__PP460_gp190__00054__D32-98
D2
medium
residues 1-38
Domain cluster:
representative
CATH (12)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 7cyuA01 | 1.10.30.10 | Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain | 0.67 | 42.0 | 3.74e-01 | 73.7% | 42.1% |
| 3di1A00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.67 | 44.0 | 2.57e-01 | 76.3% | 9.0% |
| 2dbbB01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.66 | 52.0 | 4.71e-01 | 100.0% | 63.6% |
| 3ol4A02 | 1.10.10.2390 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.66 | 55.0 | 4.83e-01 | 100.0% | 81.7% |
| 1rr7A02 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.64 | 48.0 | 4.55e-01 | 100.0% | 68.8% |
| 4kxfB02 | 1.10.1900.50 | Mainly Alpha › Orthogonal Bundle › c-terminal domain of poly(a) binding protein › | 0.62 | 43.0 | 3.81e-01 | 86.8% | 49.1% |
| 3dfgA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.61 | 50.0 | 4.74e-01 | 100.0% | 79.2% |
| 1c0wA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.59 | 43.0 | 3.88e-01 | 100.0% | 61.6% |
| 3b4qA00 | 1.10.1200.100 | Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › conserved protein domain from corynebacterium diphtheriae | 0.59 | 46.0 | 3.53e-01 | 92.1% | 37.9% |
| 1j1vA00 | 1.10.1750.10 | Mainly Alpha › Orthogonal Bundle › Chromosomal Replication Initiator Protein Dnaa; Chain: A; › DnaA protein, C-terminal DNA-binding domain | 0.59 | 49.0 | 3.69e-01 | 94.7% | 46.8% |
| 2bl0B01 | 1.10.238.10 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand | 0.53 | 38.0 | 3.21e-01 | 86.8% | 44.1% |
| 2qm1A02 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.51 | 41.0 | 2.80e-01 | 100.0% | 69.9% |
ECOD (11)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4463651 | 101.1.2.8 ↗ | alpha arrays › HTH › HTH › winged helix domain › Trans_reg_C | 0.84 | 74.0 | 5.35e-01 | 100.0% | 59.0% |
| 3386797 | 4964.1.1.1 ↗ | alpha arrays › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › DNA_pol_A | 0.75 | 57.0 | 3.51e-01 | 84.2% | 18.3% |
| 3935019 | 2498.1.1.2 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Astacin | 0.66 | 48.0 | 2.89e-01 | 81.6% | 26.3% |
| 3802324 | 103.1.1.0 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain | 0.61 | 42.0 | 4.04e-01 | 73.7% | 80.0% |
| 4948918 | 101.1.2.141 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_24 | 0.58 | 42.0 | 4.06e-01 | 100.0% | 67.3% |
| 3251582 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.55 | 44.0 | 3.36e-01 | 100.0% | 34.5% |
| 3680920 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.53 | 42.0 | 3.72e-01 | 100.0% | 61.5% |
| 4060637 | 2498.1.1.124 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › PF29610 | 0.53 | 44.0 | 2.62e-01 | 100.0% | 33.5% |
| 5011219 | 101.1.2.92 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_11 | 0.52 | 37.0 | 3.67e-01 | 100.0% | 82.0% |
| 5005859 | 2498.1.1.124 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › PF29610 | 0.52 | 37.0 | 2.39e-01 | 81.6% | 81.8% |
| 3233739 | 2006.1.6.9 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like › Copine | 0.51 | 43.0 | 2.63e-01 | 100.0% | 47.1% |
D3
medium
residues 54-89
Domain cluster:
rep: IMGVR_UViG_3300045988_052827-3300045988-Ga0495776_012065_94781_95548__D2-35
CATH (16)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4tmaJ00 | 3.30.50.10 | Alpha Beta › 2-Layer Sandwich › Erythroid Transcription Factor GATA-1; Chain A › Erythroid Transcription Factor GATA-1, subunit A | 0.75 | 63.0 | 5.47e-01 | 100.0% | 61.4% |
| 3d00A02 | 3.30.60.80 | Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › | 0.71 | 47.0 | 5.03e-01 | 86.1% | 83.3% |
| 2w0tA00 | 3.30.60.160 | Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › | 0.66 | 54.0 | 5.21e-01 | 100.0% | 83.7% |
| 3p2aA01 | 2.30.30.380 | Mainly Beta › Roll › SH3 type barrels. › Zn-finger domain of Sec23/24 | 0.64 | 51.0 | 5.20e-01 | 97.2% | 97.2% |
| 3vhtB02 | 3.30.160.60 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger | 0.63 | 44.0 | 4.55e-01 | 94.4% | 79.4% |
| 2od1A00 | 6.10.140.2220 | Special › Helix non-globular › Helix Hairpins › | 0.63 | 51.0 | 4.65e-01 | 94.4% | 68.0% |
| 2gviA03 | 3.30.60.20 | Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › | 0.60 | 47.0 | 4.84e-01 | 91.7% | 100.0% |
| 3lpmA01 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.58 | 46.0 | 2.93e-01 | 94.4% | 99.1% |
| 1y8fA00 | 3.30.60.20 | Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › | 0.57 | 47.0 | 4.31e-01 | 100.0% | 78.4% |
| 6xi7B02 | 3.30.60.20 | Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › | 0.57 | 43.0 | 4.31e-01 | 91.7% | 89.7% |
| 5sviB00 | 3.30.40.100 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › | 0.54 | 41.0 | 3.71e-01 | 83.3% | 73.6% |
| 4c1sA00 | 1.50.10.20 | Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › | 0.54 | 41.0 | 2.46e-01 | 100.0% | 16.8% |
| 1wjpA01 | 3.30.160.60 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger | 0.54 | 37.0 | 3.87e-01 | 91.7% | 87.1% |
| 3m7nA03 | 2.20.70.10 | Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › | 0.52 | 36.0 | 3.69e-01 | 86.1% | 79.4% |
| 1rfhA01 | 3.30.60.20 | Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › | 0.51 | 38.0 | 3.75e-01 | 91.7% | 85.4% |
| 7vbnL01 | 3.30.160.190 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › atu1810 like domain | 0.50 | 34.0 | 2.67e-01 | 72.2% | 53.7% |
ECOD (42)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5018523 | 377.1.1.0 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like | 0.95 | 80.0 | 6.29e-01 | 100.0% | 47.1% |
| 3701455 | 376.1.3.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger | 0.73 | 60.0 | 5.34e-01 | 97.2% | 96.4% |
| 5004198 | 377.1.1.0 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like | 0.71 | 54.0 | 5.52e-01 | 91.7% | 94.3% |
| 5004690 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.71 | 54.0 | 5.47e-01 | 91.7% | 94.3% |
| 3916124 | 377.1.1.26 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › zf-FCS_1 | 0.69 | 57.0 | 5.45e-01 | 100.0% | 80.0% |
| 5050300 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.68 | 55.0 | 5.55e-01 | 88.9% | 97.1% |
| 4201209 | 375.6.1.1 ↗ | few secondary structure elements › Rubredoxin-like › FlhC-like › FlhC-like › FlhC | 0.68 | 51.0 | 5.37e-01 | 86.1% | 100.0% |
| 4442858 | 931.1.1.15 ↗ | few secondary structure elements › Metallothionein › Metallothionein › Metallothionein › PF26927 | 0.68 | 55.0 | 5.58e-01 | 91.7% | 97.1% |
| 3781281 | 377.9.1.4 ↗ | few secondary structure elements › Glucocorticoid receptor-like › HIT/MYND zinc finger-like › HIT/MYND zinc finger-like › zf-Mss51 | 0.68 | 58.0 | 4.62e-01 | 100.0% | 56.0% |
| 3405764 | 377.9.1.9 ↗ | few secondary structure elements › Glucocorticoid receptor-like › HIT/MYND zinc finger-like › HIT/MYND zinc finger-like › MYND_ZMYND11_ZMYD8 | 0.68 | 53.0 | 5.18e-01 | 94.4% | 80.0% |
| 4031664 | 375.1.1.75 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › DUF2197 | 0.67 | 52.0 | 5.10e-01 | 88.9% | 100.0% |
| 3419900 | 375.1.1.200 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-LSD1 | 0.67 | 51.0 | 5.15e-01 | 94.4% | 88.6% |
| 3921605 | 377.9.1.9 ↗ | few secondary structure elements › Glucocorticoid receptor-like › HIT/MYND zinc finger-like › HIT/MYND zinc finger-like › MYND_ZMYND11_ZMYD8 | 0.67 | 52.0 | 3.70e-01 | 94.4% | 27.8% |
| 3704041 | 375.1.1.77 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › DUF4379 | 0.66 | 49.0 | 5.19e-01 | 83.3% | 100.0% |
| 3492984 | 377.9.1.9 ↗ | few secondary structure elements › Glucocorticoid receptor-like › HIT/MYND zinc finger-like › HIT/MYND zinc finger-like › MYND_ZMYND11_ZMYD8 | 0.66 | 53.0 | 4.52e-01 | 97.2% | 55.0% |
| 3189914 | 375.1.1.221 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf_Tbcl_Rhp7 | 0.65 | 52.0 | 5.31e-01 | 91.7% | 100.0% |
| 4937876 | 101.1.2.48 ↗ | alpha arrays › HTH › HTH › winged helix domain › PadR | 0.64 | 52.0 | 3.57e-01 | 91.7% | 26.4% |
| 3855126 | 377.1.1.0 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like | 0.64 | 52.0 | 5.25e-01 | 97.2% | 97.1% |
| 3742724 | 375.1.1.221 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf_Tbcl_Rhp7 | 0.64 | 49.0 | 5.02e-01 | 88.9% | 100.0% |
| 3412818 | 386.1.1.4 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-BED | 0.64 | 49.0 | 5.01e-01 | 97.2% | 100.0% |
| 3337279 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.63 | 49.0 | 5.02e-01 | 91.7% | 94.3% |
| 3392574 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.63 | 53.0 | 5.01e-01 | 100.0% | 86.7% |
| 3690640 | 375.1.1.221 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf_Tbcl_Rhp7 | 0.63 | 54.0 | 4.90e-01 | 100.0% | 80.0% |
| 8219 | 377.9.1.1 ↗ | few secondary structure elements › Glucocorticoid receptor-like › HIT/MYND zinc finger-like › HIT/MYND zinc finger-like › zf-MYND | 0.62 | 50.0 | 4.74e-01 | 97.2% | 74.5% |
| 3717231 | 376.1.3.6 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › zf-CW | 0.60 | 45.0 | 3.98e-01 | 83.3% | 67.3% |
| 3928404 | 377.1.1.0 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like | 0.59 | 46.0 | 4.54e-01 | 91.7% | 95.0% |
| 3972613 | 375.4.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Nucleolar RNA-binding protein Nop10-like › Nucleolar RNA-binding protein Nop10-like | 0.59 | 45.0 | 4.46e-01 | 100.0% | 80.0% |
| 3785476 | 375.1.1.57 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Vps36-NZF-N | 0.57 | 44.0 | 4.27e-01 | 97.2% | 82.2% |
| 3791580 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.56 | 42.0 | 3.92e-01 | 86.1% | 97.9% |
| 3547848 | 376.1.1.107 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › PHD_NSD | 0.56 | 45.0 | 3.64e-01 | 100.0% | 55.0% |
| 3362641 | 376.1.3.57 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › zf_ULT1 | 0.56 | 41.0 | 3.61e-01 | 83.3% | 78.3% |
| 3777746 | 375.1.1.78 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-3CxxC_2 | 0.55 | 39.0 | 3.78e-01 | 77.8% | 66.7% |
| 4990542 | 377.1.1.128 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › DUF2175 | 0.55 | 45.0 | 4.29e-01 | 100.0% | 80.0% |
| 3258669 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.54 | 38.0 | 2.93e-01 | 80.6% | 35.0% |
| 4015777 | 376.1.6.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › IBR domain | 0.53 | 43.0 | 3.90e-01 | 100.0% | 81.8% |
| 2983244 | 3203.1.1.1 ↗ | a+b two layers › Putative oxidoreductase › Putative oxidoreductase › Putative oxidoreductase › NDUS4 | 0.53 | 36.0 | 2.55e-01 | 72.2% | 39.2% |
| 4940040 | 377.1.1.0 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like | 0.51 | 42.0 | 4.01e-01 | 100.0% | 84.4% |
| 4478749 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.51 | 42.0 | 3.33e-01 | 100.0% | 82.4% |
| 3583377 | 386.1.1.1 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2 | 0.51 | 38.0 | 3.39e-01 | 97.2% | 60.0% |
| 3721362 | 376.1.1.23 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4_2 | 0.51 | 40.0 | 3.58e-01 | 97.2% | 68.3% |
| 3734963 | 376.1.1.66 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_16 | 0.51 | 41.0 | 4.19e-01 | 97.2% | 100.0% |
| 4002944 | 304.9.1.0 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD | 0.50 | 37.0 | 2.76e-01 | 97.2% | 33.1% |