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LacPavin_0818_WC45_scaffold_65992_prodigal-single.1__X__X__00157
Bact-VirLacPavin_0818_WC45_scaffold_65992_prodigal-single.1__X__X__00157
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 7-147
Domain cluster:
rep: SR-VP_4-6_scaffold_141_4086954_prodigal-single.1__X__X__00141__D13-140
CATH (9)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6gp1A00 | 3.30.1300.40 | Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › | 0.67 | 33.0 | 4.48e-01 | 97.9% | 96.9% |
| 6m9yA00 | 3.30.1300.40 | Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › | 0.63 | 28.0 | 4.05e-01 | 92.2% | 100.0% |
| 1ffvB02 | 3.30.365.10 | Alpha Beta › 2-Layer Sandwich › Aldehyde Oxidoreductase; domain 4 › Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain | 0.59 | 31.0 | 3.14e-01 | 91.5% | 46.9% |
| 2gtlN02 | 2.40.128.620 | Mainly Beta › Beta Barrel › Lipocalin › | 0.57 | 40.0 | 3.83e-01 | 100.0% | 60.0% |
| 4kghA00 | 3.15.10.10 | Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 1 › Bactericidal permeability-increasing protein; domain 1 | 0.57 | 43.0 | 3.93e-01 | 80.1% | 91.2% |
| 1iz6A01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.54 | 26.0 | 3.36e-01 | 74.5% | 85.5% |
| 1xzwA01 | 2.60.40.380 | Mainly Beta › Sandwich › Immunoglobulin-like › Purple acid phosphatase-like, N-terminal | 0.51 | 28.0 | 3.29e-01 | 95.0% | 74.5% |
| 4o8sA01 | 3.10.450.620 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › JHP933, nucleotidyltransferase-like core domain | 0.51 | 27.0 | 2.85e-01 | 78.0% | 54.4% |
| 1y8cA02 | 2.20.25.110 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › S-adenosyl-L-methionine-dependent methyltransferases | 0.50 | 23.0 | 3.21e-01 | 77.3% | 95.0% |
ECOD (6)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3852952 | 330.1.1.5 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › DND1_DSRM | 0.58 | 33.0 | 4.16e-01 | 73.8% | 97.5% |
| 4199172 | 883.1.1.19 ↗ | a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › PF26544 | 0.56 | 46.0 | 4.10e-01 | 90.8% | 97.2% |
| 3879303 | 330.1.1.5 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › DND1_DSRM | 0.55 | 32.0 | 3.99e-01 | 73.8% | 100.0% |
| 4116159 | 330.1.1.5 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › DND1_DSRM | 0.54 | 33.0 | 3.98e-01 | 78.0% | 94.4% |
| 4058654 | 330.4.1.1 ↗ | a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC | 0.50 | 28.0 | 3.28e-01 | 78.7% | 75.8% |
| 3259959 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.50 | 27.0 | 3.09e-01 | 94.3% | 70.0% |