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LacPavin_0818_WC45_scaffold_65992_prodigal-single.1__X__X__00163
Bact-VirLacPavin_0818_WC45_scaffold_65992_prodigal-single.1__X__X__00163
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 7-75
Domain cluster:
representative
CATH (29)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1nh8A03 | 3.30.70.120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.66 | 52.0 | 5.34e-01 | 88.4% | 95.5% |
| 2av5A00 | 3.30.70.3250 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribonuclease P, Pop5 subunit | 0.65 | 56.0 | 4.95e-01 | 100.0% | 99.1% |
| 5zneA00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.65 | 51.0 | 5.08e-01 | 88.4% | 100.0% |
| 4rr5A02 | 3.30.70.250 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Malonyl-CoA ACP transacylase, ACP-binding | 0.63 | 51.0 | 5.22e-01 | 89.9% | 96.9% |
| 3jcmH04 | 3.30.70.870 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Elongation Factor G (Translational Gtpase), domain 3 | 0.62 | 51.0 | 5.03e-01 | 94.2% | 97.4% |
| 4lvnP00 | 3.30.70.2380 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.62 | 53.0 | 5.04e-01 | 95.7% | 96.3% |
| 5t0oA03 | 3.30.70.1320 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Multidrug efflux transporter AcrB pore domain like | 0.61 | 47.0 | 4.27e-01 | 87.0% | 96.0% |
| 3tmaA01 | 3.30.2130.30 | Alpha Beta › 2-Layer Sandwich › VC0802-like › | 0.61 | 51.0 | 4.05e-01 | 97.1% | 94.2% |
| 2yx1A01 | 3.30.70.2580 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.61 | 51.0 | 5.20e-01 | 98.6% | 97.0% |
| 3dgpB00 | 3.30.70.1220 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › TFB5-like | 0.61 | 41.0 | 4.33e-01 | 75.4% | 77.8% |
| 5wt3A01 | 3.30.70.2580 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.60 | 46.0 | 4.73e-01 | 94.2% | 87.7% |
| 1fvqA00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.60 | 46.0 | 4.60e-01 | 85.5% | 100.0% |
| 2cpqA01 | 3.30.1370.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 | 0.59 | 42.0 | 4.38e-01 | 78.3% | 98.4% |
| 1mwyA00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.58 | 46.0 | 4.55e-01 | 89.9% | 95.9% |
| 2g0cA00 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.58 | 45.0 | 4.52e-01 | 85.5% | 100.0% |
| 4oevA02 | 3.90.76.10 | Alpha Beta › Alpha-Beta Complex › Dipeptide-binding Protein; domain 1 › Dipeptide-binding Protein; Domain 1 | 0.58 | 40.0 | 3.44e-01 | 73.9% | 73.0% |
| 4qflA02 | 3.90.76.10 | Alpha Beta › Alpha-Beta Complex › Dipeptide-binding Protein; domain 1 › Dipeptide-binding Protein; Domain 1 | 0.57 | 41.0 | 3.11e-01 | 76.8% | 56.7% |
| 3aqpA02 | 3.30.70.3220 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.56 | 46.0 | 3.67e-01 | 97.1% | 97.5% |
| 1sjqA00 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.56 | 48.0 | 4.52e-01 | 100.0% | 94.3% |
| 2ofhX00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.56 | 42.0 | 4.19e-01 | 85.5% | 97.2% |
| 2grvA02 | 3.90.76.10 | Alpha Beta › Alpha-Beta Complex › Dipeptide-binding Protein; domain 1 › Dipeptide-binding Protein; Domain 1 | 0.56 | 39.0 | 3.44e-01 | 76.8% | 67.3% |
| 6hhuA01 | 2.60.40.1220 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.54 | 42.0 | 4.03e-01 | 84.1% | 93.6% |
| 1vx7X00 | 3.30.1360.210 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › | 0.54 | 41.0 | 3.78e-01 | 87.0% | 92.8% |
| 4kx7A01 | 2.60.40.1730 | Mainly Beta › Sandwich › Immunoglobulin-like › tricorn interacting facor f3 domain | 0.53 | 42.0 | 3.09e-01 | 91.3% | 72.1% |
| 1ixkA01 | 3.30.70.1170 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Sun protein; domain 3 | 0.53 | 42.0 | 3.77e-01 | 97.1% | 60.0% |
| 3m4xA01 | 3.30.70.1170 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Sun protein; domain 3 | 0.53 | 39.0 | 3.65e-01 | 97.1% | 63.6% |
| 1d9yA02 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.52 | 45.0 | 3.55e-01 | 100.0% | 84.3% |
| 2gk6A02 | 2.40.30.230 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › | 0.51 | 37.0 | 3.48e-01 | 76.8% | 77.1% |
| 3ekiA01 | 3.40.190.180 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Cypl, domain I | 0.50 | 40.0 | 3.01e-01 | 100.0% | 34.7% |
ECOD (42)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4956503 | 304.24.1.0 ↗ | a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like | 0.69 | 55.0 | 5.56e-01 | 87.0% | 91.4% |
| 4433350 | 304.28.1.13 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain › MMPL | 0.69 | 54.0 | 4.96e-01 | 88.4% | 100.0% |
| 3391335 | 304.5.1.0 ↗ | a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like | 0.68 | 54.0 | 4.98e-01 | 88.4% | 94.4% |
| 3278264 | 304.28.1.13 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain › MMPL | 0.67 | 54.0 | 4.70e-01 | 88.4% | 82.9% |
| 3962574 | 5067.1.1.0 ↗ | alpha bundles › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain | 0.66 | 54.0 | 3.30e-01 | 91.3% | 18.0% |
| 3928953 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.65 | 47.0 | 5.05e-01 | 82.6% | 96.4% |
| 3592854 | 304.9.1.0 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD | 0.65 | 53.0 | 4.82e-01 | 91.3% | 87.4% |
| 4947181 | 304.5.1.0 ↗ | a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like | 0.64 | 51.0 | 5.10e-01 | 88.4% | 91.4% |
| 3279154 | 304.4.1.0 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel | 0.64 | 51.0 | 4.55e-01 | 89.9% | 73.0% |
| 5019786 | 304.24.1.5 ↗ | a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › Trm5_N | 0.63 | 52.0 | 5.22e-01 | 94.2% | 90.0% |
| 5000640 | 304.24.1.0 ↗ | a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like | 0.63 | 54.0 | 5.54e-01 | 94.2% | 100.0% |
| 3627237 | 304.120.1.0 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in ThiI › Ferredoxin-like domain in ThiI | 0.63 | 49.0 | 5.20e-01 | 94.2% | 100.0% |
| 3604099 | 304.24.1.5 ↗ | a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › Trm5_N | 0.63 | 52.0 | 5.08e-01 | 94.2% | 84.0% |
| 3797378 | 304.9.1.79 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › PF28976 | 0.63 | 55.0 | 4.42e-01 | 100.0% | 60.7% |
| None | — | 0.63 | 54.0 | 4.69e-01 | 100.0% | 89.4% | |
| 4025701 | 304.9.1.1 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 | 0.63 | 53.0 | 4.88e-01 | 95.7% | 86.7% |
| 4959923 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.62 | 48.0 | 4.80e-01 | 85.5% | 98.6% |
| 2507085 | 304.7.1.0 ↗ | a+b two layers › Alpha-beta plaits › Protease propeptides/inhibitors › Protease propeptides/inhibitors | 0.62 | 48.0 | 5.00e-01 | 95.7% | 95.2% |
| 4993336 | 304.24.1.5 ↗ | a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › Trm5_N | 0.62 | 50.0 | 5.06e-01 | 94.2% | 90.0% |
| 1291966 | 304.7.1.5 ↗ | a+b two layers › Alpha-beta plaits › Protease propeptides/inhibitors › Protease propeptides/inhibitors › SUB1_ProdP9 | 0.62 | 53.0 | 5.04e-01 | 95.7% | 96.3% |
| 3701734 | 11.2.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain | 0.61 | 49.0 | 4.00e-01 | 89.9% | 95.6% |
| 3225575 | 304.9.1.0 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD | 0.60 | 44.0 | 4.22e-01 | 78.3% | 95.0% |
| 3597627 | 304.151.1.0 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin-like domain of receptor-type protein tyrosine phosphatase › Ferredoxin-like domain of receptor-type protein tyrosine phosphatase | 0.60 | 48.0 | 4.09e-01 | 89.9% | 96.5% |
| 3781742 | 304.7.1.0 ↗ | a+b two layers › Alpha-beta plaits › Protease propeptides/inhibitors › Protease propeptides/inhibitors | 0.60 | 49.0 | 4.94e-01 | 95.7% | 97.1% |
| 5038011 | 304.4.1.0 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel | 0.60 | 44.0 | 4.19e-01 | 78.3% | 97.5% |
| 4960289 | 304.128.1.0 ↗ | a+b two layers › Alpha-beta plaits › ferredoxin-like domain in periplasmic region of MacB › ferredoxin-like domain in periplasmic region of MacB | 0.59 | 49.0 | 4.62e-01 | 97.1% | 97.8% |
| 3511799 | 304.128.1.0 ↗ | a+b two layers › Alpha-beta plaits › ferredoxin-like domain in periplasmic region of MacB › ferredoxin-like domain in periplasmic region of MacB | 0.59 | 47.0 | 4.33e-01 | 91.3% | 83.2% |
| 4937376 | 304.17.1.2 ↗ | a+b two layers › Alpha-beta plaits › N-utilization substance G protein NusG, N-terminal domain › N-utilization substance G protein NusG, N-terminal domain › Spt5-NGN | 0.59 | 50.0 | 4.81e-01 | 100.0% | 96.2% |
| 5040257 | 304.3.1.1 ↗ | a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain › HMA | 0.59 | 44.0 | 4.45e-01 | 81.2% | 100.0% |
| 1395561 | 304.120.1.3 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in ThiI › Ferredoxin-like domain in ThiI › NFLD | 0.59 | 47.0 | 4.81e-01 | 94.2% | 100.0% |
| 5038088 | 304.120.1.0 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in ThiI › Ferredoxin-like domain in ThiI | 0.59 | 44.0 | 4.54e-01 | 82.6% | 96.9% |
| 2774849 | 304.136.1.1 ↗ | a+b two layers › Alpha-beta plaits › Oligo-peptide binding protein (OPPA) insertion domain › Oligo-peptide binding protein (OPPA) insertion domain › SBP_bac_5 | 0.58 | 41.0 | 3.60e-01 | 76.8% | 73.4% |
| 3666212 | 304.3.1.1 ↗ | a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain › HMA | 0.58 | 44.0 | 4.44e-01 | 87.0% | 97.1% |
| 3987875 | 306.2.2.0 ↗ | a+b two layers › Glucose permease domain IIB-like › arginine repressor C terminal domain-related › Hypothetical protein SAV1430 | 0.57 | 41.0 | 3.86e-01 | 76.8% | 71.8% |
| 4604674 | 304.9.1.0 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD | 0.56 | 43.0 | 3.49e-01 | 85.5% | 87.6% |
| 5031343 | 3715.1.1.0 ↗ | a+b two layers › Ribosomal protein L22e › Ribosomal protein L22e › Ribosomal protein L22e | 0.54 | 43.0 | 4.07e-01 | 92.8% | 90.0% |
| 3250368 | 304.4.1.8 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › rhaM | 0.54 | 45.0 | 3.79e-01 | 94.2% | 95.0% |
| 3401714 | 304.9.1.0 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD | 0.54 | 42.0 | 3.62e-01 | 89.9% | 87.5% |
| 4029147 | 305.1.1.1 ↗ | a+b two layers › DCoH-like › RBP11-like subunits of RNA polymerase › RBP11-like subunits of RNA polymerase › RNA_pol_L | 0.53 | 40.0 | 3.14e-01 | 87.0% | 44.6% |
| 3728657 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.51 | 35.0 | 3.20e-01 | 71.0% | 83.3% |
| 3735563 | 101.1.2.267 ↗ | alpha arrays › HTH › HTH › winged helix domain › Nse4_C | 0.51 | 36.0 | 2.94e-01 | 78.3% | 85.3% |
| 3473822 | 207.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats | 0.50 | 35.0 | 2.40e-01 | 75.4% | 41.8% |