←Back to structures
LacPavin_0818_WC45_scaffold_65992_prodigal-single.1__X__X__00166
Bact-VirLacPavin_0818_WC45_scaffold_65992_prodigal-single.1__X__X__00166
Identity
- Kingdom:
- phage
Quality
73.4
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 7-140
Domain cluster:
rep: Salt_Pond_R2_C_D2_MG_scaffold_7_prodigal-single.1__X__X__00234__D180-301
CATH (6)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2lnjA00 | 3.40.1000.10 | Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich | 0.54 | 38.0 | 3.52e-01 | 97.0% | 57.1% |
| 2jq5A00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.51 | 39.0 | 4.05e-01 | 81.3% | 98.4% |
| 4kz1A00 | 3.10.450.230 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › VirB8 protein | 0.51 | 37.0 | 3.75e-01 | 76.1% | 98.5% |
| 2d4rA00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.51 | 37.0 | 3.61e-01 | 82.1% | 69.2% |
| 4mxtA00 | 2.50.20.10 | Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX | 0.50 | 35.0 | 3.20e-01 | 72.4% | 82.9% |
| 1lshA01 | 2.30.230.10 | Mainly Beta › Roll › Lipovitellin-phosvitin complex; beta-sheet shell regions › Lipovitellin; beta-sheet shell regions, chain A | 0.50 | 38.0 | 3.04e-01 | 79.1% | 76.4% |
ECOD (3)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3412971 | 216.1.1.0 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like | 0.64 | 35.0 | 3.86e-01 | 74.6% | 65.5% |
| 4031576 | 71.1.1.5 ↗ | beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › DUF576 | 0.53 | 40.0 | 3.35e-01 | 79.1% | 84.7% |
| 4150901 | 330.10.1.0 ↗ | a+b two layers › dsRBD-like › Heterocyclase TruD C-terminal domain › Heterocyclase TruD C-terminal domain | 0.53 | 42.0 | 4.08e-01 | 82.8% | 86.2% |
D2
high
residues 178-295
D3
high
residues 304-368