←Back to structures
LacPavin_0818_WC45_scaffold_65992_prodigal-single.1__X__X__00176
Bact-VirLacPavin_0818_WC45_scaffold_65992_prodigal-single.1__X__X__00176
Identity
- Kingdom:
- phage
Quality
83.0
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 60-142
Domain cluster:
rep: NC_061451.1__YP_010303461.1__MPK74_gp320__00320__D12-90
CATH (14)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1gtdA00 | 3.30.1280.10 | Alpha Beta › 2-Layer Sandwich › Mth169; Chain: A , › Phosphoribosylformylglycinamidine synthase subunit PurS | 0.62 | 43.0 | 4.34e-01 | 71.1% | 100.0% |
| 3ce8A00 | 3.30.70.120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.62 | 46.0 | 4.55e-01 | 79.5% | 98.9% |
| 3egrA00 | 3.10.20.520 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phenylacetic acid degradation B | 0.61 | 38.0 | 4.21e-01 | 73.5% | 82.5% |
| 2cuwA00 | 3.30.1280.10 | Alpha Beta › 2-Layer Sandwich › Mth169; Chain: A , › Phosphoribosylformylglycinamidine synthase subunit PurS | 0.58 | 41.0 | 4.16e-01 | 74.7% | 98.8% |
| 4e6zA02 | 3.40.1350.100 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › | 0.57 | 42.0 | 4.15e-01 | 97.6% | 71.9% |
| 2olgA01 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.56 | 38.0 | 3.31e-01 | 100.0% | 45.0% |
| 1t4aA00 | 3.30.1280.10 | Alpha Beta › 2-Layer Sandwich › Mth169; Chain: A , › Phosphoribosylformylglycinamidine synthase subunit PurS | 0.55 | 38.0 | 3.92e-01 | 73.5% | 100.0% |
| 5h80B03 | 3.30.470.20 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain | 0.54 | 41.0 | 3.00e-01 | 83.1% | 89.6% |
| 6k2eA01 | 3.30.70.240 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.54 | 37.0 | 3.95e-01 | 71.1% | 98.5% |
| 2g2nC00 | 2.60.40.180 | Mainly Beta › Sandwich › Immunoglobulin-like › Transthyretin/hydroxyisourate hydrolase domain | 0.53 | 33.0 | 3.02e-01 | 71.1% | 46.4% |
| 1vwxS02 | 3.10.20.10 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.52 | 40.0 | 4.11e-01 | 86.7% | 93.4% |
| 1etb200 | 2.60.40.180 | Mainly Beta › Sandwich › Immunoglobulin-like › Transthyretin/hydroxyisourate hydrolase domain | 0.51 | 34.0 | 3.09e-01 | 73.5% | 47.9% |
| 1wscA01 | 3.30.700.20 | Alpha Beta › 2-Layer Sandwich › Glycoprotein, Type 4 Pilin › Hypothetical protein ph0010; domain 1 | 0.51 | 36.0 | 3.05e-01 | 73.5% | 78.5% |
| 1x0pA01 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.51 | 44.0 | 4.21e-01 | 96.4% | 97.9% |
ECOD (15)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 199962 | 3115.5.1.1 ↗ | a+b two layers › GP2-like › phenylacetate-CoA oxygenase subunit PaaB › phenylacetate-CoA oxygenase subunit PaaB › PaaB | 0.61 | 38.0 | 4.21e-01 | 73.5% | 82.5% |
| 4026065 | 221.1.1.177 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › SNAPC3 | 0.60 | 50.0 | 4.20e-01 | 94.0% | 98.0% |
| 4121299 | 1119.1.1.1 ↗ | a+b complex topology › 6-carboxyhexanoate-CoA ligase › 6-carboxyhexanoate-CoA ligase › 6-carboxyhexanoate-CoA ligase › BioW | 0.60 | 52.0 | 3.80e-01 | 98.8% | 70.0% |
| 4468424 | 4943.1.1.1 ↗ | a+b two layers › YcgL/NE1680-like › YcgL/NE1680-like › YcgL/NE1680-like › YcgL | 0.59 | 47.0 | 4.75e-01 | 95.2% | 84.7% |
| 4682624 | 4943.1.1.1 ↗ | a+b two layers › YcgL/NE1680-like › YcgL/NE1680-like › YcgL/NE1680-like › YcgL | 0.59 | 47.0 | 4.71e-01 | 95.2% | 84.7% |
| 4122400 | 1119.1.1.1 ↗ | a+b complex topology › 6-carboxyhexanoate-CoA ligase › 6-carboxyhexanoate-CoA ligase › 6-carboxyhexanoate-CoA ligase › BioW | 0.59 | 50.0 | 3.70e-01 | 98.8% | 71.4% |
| 159110 | 304.100.1.1 ↗ | a+b two layers › Alpha-beta plaits › PurS-like › PurS-like › PurS | 0.58 | 41.0 | 4.16e-01 | 74.7% | 98.8% |
| 2530507 | 220.3.1.3 ↗ | beta barrels › PH domain-like › first barrel domain in viral glycoproteins › first barrel domain in viral glycoproteins › Glycoprot_B_PH1 | 0.58 | 48.0 | 3.62e-01 | 95.2% | 85.2% |
| 5028063 | 264.1.1.9 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › 2_5_RNA_ligase2 | 0.56 | 38.0 | 3.08e-01 | 72.3% | 91.4% |
| 4967222 | 3115.1.1.1 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A | 0.56 | 38.0 | 4.17e-01 | 74.7% | 98.3% |
| 4990637 | 3115.1.1.1 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A | 0.54 | 43.0 | 4.31e-01 | 89.2% | 90.4% |
| 3665315 | 4004.1.1.3 ↗ | beta sandwiches › NAD kinase beta sandwich domain-like › NAD kinase beta sandwich domain-like › NAD kinase beta sandwich domain-like › NAD_kinase_C | 0.54 | 43.0 | 3.49e-01 | 89.2% | 99.4% |
| 4947183 | 206.1.3.17 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › DUF1297 | 0.52 | 44.0 | 3.14e-01 | 95.2% | 43.0% |
| 3607549 | 11.2.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain | 0.52 | 35.0 | 2.65e-01 | 71.1% | 99.6% |
| 5021393 | 206.1.3.17 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › DUF1297 | 0.50 | 44.0 | 3.13e-01 | 100.0% | 43.3% |