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LacPavin_0818_WC45_scaffold_65992_prodigal-single.1__X__X__00200
Bact-VirLacPavin_0818_WC45_scaffold_65992_prodigal-single.1__X__X__00200
Identity
- Kingdom:
- phage
Quality
78.5
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 32-79
Domain cluster:
representative
CATH (7)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6spbZ00 | 3.30.1390.20 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein L30; Chain: A, › Ribosomal protein L30/L7 | 0.67 | 56.0 | 5.41e-01 | 100.0% | 96.5% |
| 3hrsA02 | 2.30.30.90 | Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) | 0.60 | 49.0 | 4.36e-01 | 100.0% | 81.6% |
| 2p6rA03 | 1.10.3380.30 | Mainly Alpha › Orthogonal Bundle › Sec63 N-terminal domain-like fold › | 0.57 | 43.0 | 2.92e-01 | 87.5% | 62.8% |
| 3fmbA01 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.54 | 42.0 | 3.60e-01 | 100.0% | 92.0% |
| 3dzaA02 | 6.10.250.2140 | Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.53 | 41.0 | 3.89e-01 | 93.8% | 91.9% |
| 5ajiB03 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.53 | 38.0 | 3.35e-01 | 89.6% | 88.4% |
| 2lxiA00 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.50 | 39.0 | 3.42e-01 | 100.0% | 86.8% |
ECOD (13)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4952478 | 4.1.1.40 ↗ | beta barrels › SH3 › SH3 › SH3 › FeoA | 0.57 | 46.0 | 4.15e-01 | 100.0% | 82.7% |
| 4547531 | 308.1.1.0 ↗ | a+b two layers › ClpS-like › ClpS-related › ClpS-related | 0.57 | 45.0 | 3.97e-01 | 100.0% | 85.9% |
| 3719123 | 304.102.1.1 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › PseudoU_synth_2 | 0.57 | 39.0 | 2.39e-01 | 72.9% | 25.1% |
| 3599569 | 327.11.2.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) | 0.56 | 41.0 | 3.34e-01 | 81.2% | 64.0% |
| 3512772 | 206.1.1.28 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Haspin_kinase | 0.56 | 38.0 | 2.57e-01 | 75.0% | 67.3% |
| 1953134 | 2003.1.5.81 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 | 0.55 | 39.0 | 2.58e-01 | 79.2% | 19.6% |
| 3886438 | 3226.1.1.3 ↗ | alpha complex topology › Uracil Transporter UraA › Uracil Transporter UraA › Uracil Transporter UraA › HCO3_cotransp | 0.54 | 42.0 | 2.47e-01 | 97.9% | 71.5% |
| 3760851 | 3226.1.1.3 ↗ | alpha complex topology › Uracil Transporter UraA › Uracil Transporter UraA › Uracil Transporter UraA › HCO3_cotransp | 0.54 | 40.0 | 2.33e-01 | 85.4% | 60.0% |
| 3894036 | 207.1.1.55 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_1,LRR_8 | 0.53 | 37.0 | 2.35e-01 | 79.2% | 12.2% |
| 4363128 | 304.20.1.5 ↗ | a+b two layers › Alpha-beta plaits › PAP/Archaeal CCA-adding enzyme, C-terminal domain › PAP/Archaeal CCA-adding enzyme, C-terminal domain › tRNA_synt_2f | 0.51 | 42.0 | 2.79e-01 | 100.0% | 65.3% |
| 4094863 | 304.4.1.60 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › UPF0228 | 0.51 | 40.0 | 3.60e-01 | 100.0% | 95.0% |
| 5009121 | 304.8.1.100 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › UPF0228 | 0.51 | 40.0 | 3.60e-01 | 100.0% | 95.0% |
| 4595950 | 2485.1.1.0 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like | 0.51 | 41.0 | 3.08e-01 | 97.9% | 67.4% |