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LacPavin_0818_WC45_scaffold_65992_prodigal-single.1__X__X__00209
Bact-VirLacPavin_0818_WC45_scaffold_65992_prodigal-single.1__X__X__00209
Identity
- Kingdom:
- phage
Quality
91.7
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-78
Domain cluster:
representative
CATH (3)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2f5gA00 | 3.30.70.1290 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Transposase IS200-like | 0.54 | 46.0 | 3.97e-01 | 100.0% | 85.4% |
| 2xmxA01 | 1.20.1440.280 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › | 0.53 | 38.0 | 3.18e-01 | 77.6% | 61.4% |
| 5yjlB01 | 3.30.460.30 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Glutamyl-tRNA reductase, N-terminal domain | 0.52 | 37.0 | 3.05e-01 | 77.6% | 67.7% |
ECOD (8)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3488329 | 304.9.1.0 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD | 0.57 | 48.0 | 4.11e-01 | 97.4% | 96.2% |
| 4030190 | 304.4.1.0 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel | 0.55 | 47.0 | 4.02e-01 | 98.7% | 86.5% |
| 3276506 | 244.1.1.11 ↗ | a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C › SE | 0.53 | 46.0 | 2.86e-01 | 100.0% | 20.2% |
| 4922639 | 3819.1.1.1 ↗ | alpha complex topology › CRISPR-associated endonuclease Cas9 alpha-helical lobe › CRISPR-associated endonuclease Cas9 alpha-helical lobe › CRISPR-associated endonuclease Cas9 alpha-helical lobe › Cas9_REC | 0.52 | 38.0 | 2.46e-01 | 80.3% | 21.8% |
| 5081108 | 5067.1.1.0 ↗ | alpha bundles › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain | 0.52 | 42.0 | 2.62e-01 | 93.4% | 28.2% |
| 3482769 | 10.28.1.0 ↗ | beta sandwiches › jelly-roll › Jelly-roll domain in Zinc finger protein ZPR1 › Jelly-roll domain in Zinc finger protein ZPR1 | 0.52 | 44.0 | 3.71e-01 | 100.0% | 90.0% |
| 3597381 | 304.4.1.0 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel | 0.51 | 43.0 | 4.03e-01 | 97.4% | 100.0% |
| None | — | 0.51 | 35.0 | 2.35e-01 | 72.4% | 35.0% |