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LacPavin_0818_WC45_scaffold_65992_prodigal-single.1__X__X__00232
Bact-VirLacPavin_0818_WC45_scaffold_65992_prodigal-single.1__X__X__00232
Identity
- Kingdom:
- phage
Quality
89.3
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 10-67
Domain cluster:
representative
CATH (30)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2m9uA00 | 2.30.30.850 | Mainly Beta › Roll › SH3 type barrels. › | 0.71 | 54.0 | 4.62e-01 | 100.0% | 52.8% |
| 3bdlA01 | 2.40.50.90 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.69 | 52.0 | 3.81e-01 | 84.5% | 66.3% |
| 3nmzD00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.67 | 56.0 | 4.97e-01 | 100.0% | 64.3% |
| 4iupA02 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.65 | 57.0 | 5.34e-01 | 100.0% | 79.2% |
| 2dmoA00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.65 | 54.0 | 5.15e-01 | 100.0% | 79.4% |
| 1udlA00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.65 | 53.0 | 4.50e-01 | 100.0% | 55.1% |
| 3m9qA01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.64 | 57.0 | 5.30e-01 | 100.0% | 83.3% |
| 6uzjA00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.62 | 51.0 | 5.00e-01 | 100.0% | 88.9% |
| 2fhdA02 | 2.30.30.810 | Mainly Beta › Roll › SH3 type barrels. › | 0.62 | 53.0 | 4.99e-01 | 100.0% | 79.2% |
| 2egeA00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.61 | 51.0 | 4.83e-01 | 100.0% | 82.7% |
| 4cc2A00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.61 | 51.0 | 5.07e-01 | 100.0% | 92.1% |
| 2budA00 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.60 | 51.0 | 4.44e-01 | 100.0% | 60.9% |
| 3kxtA00 | 2.30.30.610 | Mainly Beta › Roll › SH3 type barrels. › Chromatin protein Cren7 | 0.60 | 48.0 | 4.95e-01 | 98.3% | 96.4% |
| 2kxcA00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.59 | 51.0 | 4.89e-01 | 100.0% | 86.6% |
| 7z0kB01 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.59 | 50.0 | 4.88e-01 | 100.0% | 92.2% |
| 4x9cD00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.58 | 39.0 | 3.92e-01 | 100.0% | 68.3% |
| 3askA02 | 2.30.30.1150 | Mainly Beta › Roll › SH3 type barrels. › | 0.58 | 49.0 | 3.72e-01 | 100.0% | 39.1% |
| 7afrX02 | 2.30.30.180 | Mainly Beta › Roll › SH3 type barrels. › Ribosome maturation factor RimP, C-terminal domain | 0.58 | 41.0 | 4.12e-01 | 100.0% | 76.7% |
| 1whlA00 | 2.30.30.190 | Mainly Beta › Roll › SH3 type barrels. › CAP Gly-rich-like domain | 0.57 | 48.0 | 4.18e-01 | 100.0% | 80.0% |
| 5f3yA05 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.56 | 47.0 | 4.40e-01 | 100.0% | 79.2% |
| 4mb7A01 | 3.20.190.10 | Alpha Beta › Alpha-Beta Barrel › N-terminal domain of MutM-like DNA repair proteins › MutM-like, N-terminal | 0.55 | 45.0 | 3.65e-01 | 100.0% | 59.5% |
| 1ex4B02 | 2.30.30.10 | Mainly Beta › Roll › SH3 type barrels. › Integrase, C-terminal domain superfamily, retroviral | 0.54 | 40.0 | 4.02e-01 | 100.0% | 84.7% |
| 5lm7A02 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.53 | 40.0 | 3.69e-01 | 84.5% | 82.1% |
| 1cv8A00 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.52 | 45.0 | 3.28e-01 | 100.0% | 36.4% |
| 4w78G00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.52 | 42.0 | 3.14e-01 | 93.1% | 96.3% |
| 4f88102 | 3.90.1720.60 | Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › | 0.52 | 43.0 | 3.04e-01 | 100.0% | 27.7% |
| 3h7oB01 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.51 | 37.0 | 3.04e-01 | 79.3% | 54.9% |
| 3thiA01 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.51 | 39.0 | 2.96e-01 | 93.1% | 77.1% |
| 2gqfA01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.50 | 43.0 | 2.88e-01 | 100.0% | 61.8% |
| 1orfA02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.50 | 39.0 | 3.25e-01 | 86.2% | 64.8% |
ECOD (37)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3854638 | 4.1.1.131 ↗ | beta barrels › SH3 › SH3 › SH3 › MLVIN_C | 0.72 | 54.0 | 4.47e-01 | 100.0% | 47.0% |
| 3256053 | 4.8.1.10 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like › MSL3_chromo-like | 0.67 | 57.0 | 4.94e-01 | 100.0% | 61.1% |
| 3550699 | 4.8.1.10 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like › MSL3_chromo-like | 0.67 | 58.0 | 4.99e-01 | 100.0% | 63.2% |
| 3267416 | 4.1.1.1 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_1 | 0.65 | 53.0 | 4.86e-01 | 100.0% | 67.5% |
| 3237640 | 4.1.1.287 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF5641 | 0.64 | 54.0 | 4.33e-01 | 100.0% | 48.2% |
| 3627576 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.64 | 57.0 | 5.54e-01 | 100.0% | 92.3% |
| 3261986 | 4.1.1.54 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_2 | 0.64 | 52.0 | 5.20e-01 | 100.0% | 91.5% |
| 3730835 | 4.8.1.10 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like › MSL3_chromo-like | 0.64 | 54.0 | 4.62e-01 | 100.0% | 57.9% |
| 3886492 | 4.1.1.154 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF4772 | 0.64 | 55.0 | 5.10e-01 | 100.0% | 76.0% |
| 3447819 | 4.8.1.6 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot | 0.63 | 56.0 | 5.31e-01 | 100.0% | 84.3% |
| 3170922 | 4.1.1.92 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_9 | 0.63 | 51.0 | 4.87e-01 | 98.3% | 79.4% |
| 3486189 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.63 | 53.0 | 5.35e-01 | 100.0% | 96.7% |
| 3913782 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.62 | 53.0 | 5.20e-01 | 100.0% | 85.9% |
| 4001116 | 4.1.1.54 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_2 | 0.62 | 53.0 | 5.06e-01 | 100.0% | 88.6% |
| 3611291 | 4.18.1.0 ↗ | beta barrels › SH3 › Plus3 › Plus3 | 0.61 | 53.0 | 3.96e-01 | 100.0% | 37.4% |
| 3591144 | 4.8.1.0 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like | 0.61 | 54.0 | 3.98e-01 | 98.3% | 38.0% |
| 3025579 | 4.1.1.54 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_2 | 0.61 | 50.0 | 5.00e-01 | 100.0% | 95.0% |
| 3920897 | 4.1.1.92 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_9 | 0.61 | 52.0 | 4.83e-01 | 100.0% | 77.3% |
| 4250193 | 4.1.1.78 ↗ | beta barrels › SH3 › SH3 › SH3 › TTD | 0.60 | 52.0 | 4.54e-01 | 100.0% | 67.8% |
| 3482677 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.59 | 50.0 | 4.81e-01 | 100.0% | 82.9% |
| 3540253 | 4.1.1.78 ↗ | beta barrels › SH3 › SH3 › SH3 › TTD | 0.59 | 50.0 | 4.37e-01 | 100.0% | 65.3% |
| 4013324 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.59 | 51.0 | 4.86e-01 | 100.0% | 82.9% |
| 1144813 | 4.1.1.107 ↗ | beta barrels › SH3 › SH3 › SH3 › XRN1_D1 | 0.57 | 50.0 | 3.56e-01 | 100.0% | 57.6% |
| 3497683 | 4.1.1.309 ↗ | beta barrels › SH3 › SH3 › SH3 › MRP-S34 | 0.57 | 48.0 | 3.67e-01 | 100.0% | 42.0% |
| 4033110 | 4.1.1.40 ↗ | beta barrels › SH3 › SH3 › SH3 › FeoA | 0.57 | 46.0 | 4.40e-01 | 100.0% | 81.3% |
| 3866907 | 1.1.5.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel | 0.56 | 47.0 | 4.25e-01 | 100.0% | 72.9% |
| 1824182 | 4.1.1.92 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_9 | 0.56 | 47.0 | 4.40e-01 | 100.0% | 79.2% |
| 3601811 | 219.1.1.0 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases | 0.56 | 48.0 | 3.40e-01 | 100.0% | 40.7% |
| 4952214 | 4.1.1.40 ↗ | beta barrels › SH3 › SH3 › SH3 › FeoA | 0.55 | 46.0 | 4.34e-01 | 100.0% | 80.0% |
| 4023205 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.55 | 46.0 | 2.76e-01 | 96.6% | 17.6% |
| 3188195 | 2003.1.2.15 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3 | 0.54 | 47.0 | 2.79e-01 | 100.0% | 35.5% |
| 4020870 | 2003.1.2.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain | 0.54 | 46.0 | 2.75e-01 | 100.0% | 57.3% |
| 3412723 | 220.1.1.132 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › KRIT1_FRMD8_FERM_C | 0.54 | 41.0 | 3.34e-01 | 93.1% | 57.0% |
| 4120682 | 1.1.7.11 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM | 0.54 | 48.0 | 3.98e-01 | 100.0% | 59.0% |
| 3596609 | 219.1.1.0 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases | 0.54 | 46.0 | 2.93e-01 | 100.0% | 35.5% |
| 3411284 | 270.1.1.2 ↗ | beta barrels › FMT C-terminal domain-like › FMT C-terminal domain-related › FMT C-terminal domain-related › Formyl_trans_C | 0.52 | 40.0 | 3.40e-01 | 89.7% | 67.3% |
| 3639836 | 5.1.4.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 | 0.50 | 42.0 | 2.56e-01 | 94.8% | 18.5% |