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LacPavin_0818_WC45_scaffold_65992_prodigal-single.1__X__X__00241

Bact-Vir

LacPavin_0818_WC45_scaffold_65992_prodigal-single.1__X__X__00241

Identity

Kingdom:
phage

Quality

96.4 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-70
PDB
Domain cluster: representative
CATH (48)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1icwB00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.70 41.0 4.23e-01 87.0% 62.1%
1z47A03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.67 44.0 5.04e-01 78.3% 95.9%
4e4fA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.66 58.0 4.60e-01 98.6% 55.3%
1b9mA03 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.66 44.0 4.40e-01 82.6% 67.6%
1iyxA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.65 56.0 4.72e-01 100.0% 80.8%
4jn7A01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.65 57.0 4.75e-01 98.6% 65.5%
4tyzA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.64 43.0 3.71e-01 72.5% 44.0%
3n4eA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.64 56.0 4.92e-01 100.0% 75.0%
1f9qD00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.63 41.0 4.22e-01 72.5% 69.7%
2x5gA00 3.30.720.60 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › 0.63 39.0 3.59e-01 94.2% 47.3%
2czoA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.63 49.0 4.06e-01 87.0% 88.5%
4v1ag00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.61 45.0 3.54e-01 78.3% 57.4%
3k7cA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.60 40.0 3.45e-01 92.8% 43.5%
3vxvA00 3.30.890.10 Alpha Beta › 2-Layer Sandwich › Methyl-cpg-binding Protein 2; Chain A › Methyl-cpg-binding Protein 2; Chain A 0.60 34.0 3.55e-01 78.3% 60.0%
4bg8A01 3.30.420.430 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › 0.60 42.0 3.40e-01 72.5% 53.5%
2gfaB01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.60 34.0 3.59e-01 89.9% 61.3%
3jr7A03 3.30.1180.10 Alpha Beta › 2-Layer Sandwich › Hypothetical Protein Tm841; Chain: A;domain 3 › 0.60 42.0 3.47e-01 73.9% 53.7%
1nr4C00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.59 38.0 3.87e-01 72.5% 66.7%
2fhdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.58 32.0 3.41e-01 85.5% 59.7%
3v98A03 3.10.450.60 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.58 42.0 3.57e-01 78.3% 64.7%
2ml5A00 3.10.450.410 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.58 42.0 3.37e-01 81.2% 78.1%
1xexB00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.57 41.0 3.09e-01 91.3% 31.7%
1xfdA01 2.140.10.30 Mainly Beta › 8 Propeller › Methanol Dehydrogenase; Chain A › Dipeptidylpeptidase IV, N-terminal domain 0.57 48.0 2.98e-01 98.6% 25.6%
1b44D00 2.40.50.110 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.57 43.0 3.85e-01 85.5% 73.6%
4hcsA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.57 36.0 3.73e-01 72.5% 67.2%
1h6hA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.57 43.0 3.51e-01 85.5% 79.7%
3imhA00 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.56 47.0 3.09e-01 98.6% 49.1%
8aa0E01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.56 46.0 3.08e-01 95.7% 100.0%
4me3A02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.56 45.0 4.06e-01 91.3% 78.4%
2eyqA05 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.55 33.0 3.55e-01 87.0% 69.5%
5gtqA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.55 47.0 3.16e-01 100.0% 40.4%
1x6oA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.55 43.0 4.15e-01 87.0% 88.6%
1ryp200 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.55 45.0 3.28e-01 100.0% 30.0%
3e5zA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.54 46.0 3.09e-01 97.1% 30.7%
2ky8A00 3.30.890.10 Alpha Beta › 2-Layer Sandwich › Methyl-cpg-binding Protein 2; Chain A › Methyl-cpg-binding Protein 2; Chain A 0.54 40.0 4.06e-01 91.3% 78.6%
3bm4A00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.54 41.0 3.03e-01 84.1% 54.8%
5h80B03 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.54 39.0 2.76e-01 79.7% 93.6%
1b69A00 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.53 37.0 3.74e-01 73.9% 82.6%
3e82E02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.53 39.0 2.84e-01 79.7% 73.5%
3deeA02 3.90.930.50 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › 0.53 39.0 3.33e-01 79.7% 78.9%
6jy5B00 2.40.50.220 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › EutN/Ccml 0.52 41.0 3.99e-01 100.0% 75.6%
6eheA01 2.40.160.10 Mainly Beta › Beta Barrel › Porin › Porin 0.52 43.0 2.94e-01 98.6% 39.5%
2z0uA00 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.52 36.0 3.08e-01 75.4% 100.0%
2w20B01 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.52 42.0 2.73e-01 97.1% 53.5%
2re3A02 2.30.270.10 Mainly Beta › Roll › duf1285 protein fold › duf1285 protein 0.51 39.0 3.96e-01 81.2% 84.3%
2hczX02 2.60.40.760 Mainly Beta › Sandwich › Immunoglobulin-like › Expansin, cellulose-binding-like domain 0.50 43.0 3.77e-01 94.2% 63.5%
3sc7X01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.50 42.0 2.77e-01 98.6% 30.7%
1i82A00 2.60.40.1190 Mainly Beta › Sandwich › Immunoglobulin-like › 0.50 41.0 3.15e-01 98.6% 75.1%
ECOD (53)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4578663 325.1.7.0 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.68 53.0 5.36e-01 95.7% 85.7%
3284762 4090.1.1.0 a+b two layers › BH3703-like › BH3703-like › BH3703-like 0.67 47.0 3.65e-01 72.5% 47.6%
3998934 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.67 46.0 4.05e-01 72.5% 49.5%
162823 218.1.1.1 a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › MR_MLE_N 0.67 59.0 4.94e-01 98.6% 71.8%
4946970 218.1.1.10 a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › Enolase_C 0.66 58.0 4.69e-01 100.0% 74.8%
5068388 2.4.1.0 beta barrels › OB-fold › MOP-like › MOP-like 0.65 42.0 4.64e-01 84.1% 83.6%
4229823 218.1.1.2 a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › Enolase_N 0.65 57.0 4.56e-01 100.0% 72.1%
4208450 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.65 42.0 4.48e-01 79.7% 76.7%
4399358 218.1.1.2 a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › Enolase_N 0.65 56.0 4.57e-01 100.0% 74.1%
5023580 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.64 41.0 4.20e-01 72.5% 67.7%
4984315 218.1.1.2 a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › Enolase_N 0.64 55.0 4.40e-01 100.0% 69.0%
4994410 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.63 43.0 4.06e-01 71.0% 61.2%
4149372 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.63 42.0 4.39e-01 79.7% 73.8%
4932378 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.62 42.0 4.41e-01 89.9% 80.0%
4937035 220.1.1.76 beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_2 0.62 44.0 3.44e-01 73.9% 35.2%
4315771 2.1.1.2 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_L2 0.61 43.0 4.43e-01 85.5% 78.5%
3654541 2.1.1.223 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PF28721 0.61 49.0 4.27e-01 91.3% 70.9%
4037298 76.1.1.1 beta duplicates or obligate multimers › beta-Prism I › beta-Prism I › beta-Prism I › Endotoxin_M 0.61 42.0 3.04e-01 72.5% 79.0%
3861438 220.1.1.174 beta barrels › PH domain-like › PH domain-like › PH domain-like › Cybc1_Eros 0.60 42.0 3.53e-01 73.9% 49.2%
3974132 4152.2.1.0 a+b two layers › Shew3726-like › Uncharacterized protein CV_2116 › Uncharacterized protein CV_2116 0.59 45.0 4.39e-01 81.2% 88.0%
3479736 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.59 40.0 3.46e-01 72.5% 45.0%
1147343 243.1.1.38 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › BACOVA_00961-like 0.58 42.0 3.37e-01 81.2% 78.1%
4982277 295.1.1.0 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.57 39.0 4.08e-01 72.5% 83.1%
3274213 2485.1.1.55 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › FAF1 0.57 45.0 3.57e-01 88.4% 89.7%
3282644 2.24.1.2 beta barrels › OB-fold › probable receptor YhhM › probable receptor YhhM › DUF7489 0.57 44.0 4.54e-01 85.5% 90.8%
3227789 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.57 48.0 3.12e-01 97.1% 28.5%
4362720 2.1.1.48 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Elong-fact-P_C 0.57 41.0 4.45e-01 85.5% 93.1%
3350511 844.1.1.6 beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › GRDP_C 0.57 48.0 3.64e-01 100.0% 98.9%
3809079 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.57 43.0 4.52e-01 85.5% 93.3%
4012257 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.57 48.0 4.18e-01 100.0% 71.1%
3744781 109.4.1.69 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › IKI3 0.57 48.0 3.22e-01 97.1% 29.3%
3180337 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.57 47.0 3.61e-01 94.2% 73.9%
3325087 1.1.1.28 beta barrels › cradle loop barrel › RIFT-related › acid protease › Asp, TAXi_C, TAXi_N 0.56 44.0 2.81e-01 88.4% 34.5%
3703972 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.56 39.0 3.21e-01 72.5% 40.0%
4283179 325.1.7.0 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.56 46.0 3.16e-01 92.8% 25.9%
3717380 2.1.1.13 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › eIF-5a 0.56 43.0 4.19e-01 87.0% 88.7%
4505995 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.56 43.0 4.41e-01 84.1% 93.8%
4927935 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.55 43.0 4.27e-01 87.0% 93.3%
4426470 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.55 44.0 4.46e-01 91.3% 90.0%
3506301 209.1.1.0 a+b complex topology › C-type lectin-like › C-type lectin-like › C-type lectin-like 0.55 44.0 3.30e-01 89.9% 44.3%
4951503 2.4.1.0 beta barrels › OB-fold › MOP-like › MOP-like 0.55 43.0 3.39e-01 89.9% 96.2%
3165931 2.7.1.3 beta barrels › OB-fold › Tail-associated lysozyme gp5-N › Tail-associated lysozyme gp5-N › Phage_Mu_Gp45 0.54 42.0 4.01e-01 87.0% 74.1%
None 0.54 45.0 2.85e-01 98.6% 82.7%
3931208 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.54 44.0 2.86e-01 95.7% 41.2%
181029 252.1.1.1 a+b two layers › DNA-binding domain › Methyl-CpG-binding domain, MBD › Methyl-CpG-binding domain, MBD › MBD 0.54 40.0 4.06e-01 91.3% 78.6%
3962096 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.54 46.0 3.81e-01 100.0% 53.3%
3281614 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.54 42.0 3.73e-01 87.0% 71.4%
3507420 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.54 42.0 3.80e-01 85.5% 83.2%
3953859 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.53 41.0 4.21e-01 87.0% 90.8%
5038387 5.1.4.87 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › LVIVD 0.52 44.0 2.76e-01 97.1% 24.4%
3188326 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.52 45.0 2.90e-01 95.7% 28.0%
4946341 5.1.10.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 12-bladed 0.52 46.0 3.17e-01 100.0% 29.0%
3993275 109.2.1.1 alpha superhelices › Repetitive alpha hairpins › alpha/alpha toroid › alpha/alpha toroid › Prenyltrans 0.50 36.0 2.29e-01 75.4% 19.1%