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LacPavin_0818_WC45_scaffold_65992_prodigal-single.1__X__X__00244

Bact-Vir

LacPavin_0818_WC45_scaffold_65992_prodigal-single.1__X__X__00244

Identity

Kingdom:
phage

Quality

83.8 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 52-109
PDB
CATH (45)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4u6bA00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.63 53.0 3.35e-01 98.3% 72.0%
4jpdA00 3.30.920.10 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Frataxin/CyaY 0.63 46.0 3.74e-01 79.3% 79.8%
7t8tA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.62 51.0 4.04e-01 96.6% 87.8%
3tc9A02 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.61 50.0 3.19e-01 94.8% 97.2%
4i14A02 3.40.50.10990 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › GTP cyclohydrolase II 0.60 41.0 3.24e-01 70.7% 69.0%
1qxmA02 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.60 49.0 3.74e-01 94.8% 69.7%
4fr9A00 3.10.450.360 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.59 45.0 3.50e-01 86.2% 36.2%
1uypA01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.59 50.0 3.29e-01 98.3% 83.7%
5cxmA00 2.102.10.10 Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain 0.59 48.0 4.11e-01 94.8% 91.9%
3mx7A00 2.40.128.180 Mainly Beta › Beta Barrel › Lipocalin › 0.58 45.0 4.00e-01 87.9% 93.3%
3e5zA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.58 48.0 3.17e-01 100.0% 80.3%
4exrA02 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.57 39.0 3.72e-01 72.4% 60.6%
1ekgA00 3.30.920.10 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Frataxin/CyaY 0.57 43.0 3.46e-01 82.8% 97.5%
2jwyA01 2.60.40.1620 Mainly Beta › Sandwich › Immunoglobulin-like › Lipoprotein YajI-like 0.57 46.0 3.61e-01 93.1% 92.6%
3gceA00 2.102.10.10 Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain 0.56 43.0 3.66e-01 86.2% 86.5%
3fehA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 45.0 3.62e-01 93.1% 75.0%
4chjA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 47.0 3.79e-01 100.0% 75.8%
6g0nA01 1.50.10.10 Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › 0.56 39.0 2.47e-01 79.3% 21.3%
2cofA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 43.0 3.64e-01 89.7% 48.6%
7lt2A01 3.30.460.90 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › 0.55 41.0 2.75e-01 82.8% 21.2%
2jeuA02 2.170.200.10 Mainly Beta › Beta Complex › Regulatory Protein E2; Chain: A; Domain 2 › Papillomavirus E2 early protein domain 0.55 41.0 3.51e-01 84.5% 68.3%
3kfvA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.55 43.0 3.65e-01 87.9% 59.0%
2eo6A01 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.54 45.0 3.72e-01 94.8% 74.1%
2rrfA00 2.30.29.160 Mainly Beta › Roll › PH-domain like › Zinc finger FYVE domain-containing protein 21, C-terminal 0.54 45.0 3.55e-01 100.0% 80.1%
1l0qA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.54 43.0 2.91e-01 100.0% 86.4%
1k90A02 3.90.1760.10 Alpha Beta › Alpha-Beta Complex › Adenylylcyclase toxin fold › Anthrax toxin, edema factor, central domain 0.54 36.0 2.71e-01 70.7% 25.2%
7dpyB01 2.40.128.200 Mainly Beta › Beta Barrel › Lipocalin › C-type lysozyme inhibitor 0.54 44.0 4.03e-01 94.8% 77.1%
6mlyB01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.54 42.0 2.85e-01 91.4% 42.7%
7qs4A01 2.60.120.920 Mainly Beta › Sandwich › Jelly Rolls › SPRY domain 0.54 44.0 3.23e-01 96.6% 62.6%
2qm4A01 2.170.210.10 Mainly Beta › Beta Complex › Dna Repair Protein Xrcc4; Chain: A, domain 1 › DNA double-strand break repair and VJ recombination XRCC4, N-terminal 0.54 41.0 3.25e-01 89.7% 55.9%
1q7fB00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.54 43.0 2.91e-01 98.3% 80.9%
2fbeA00 2.60.120.920 Mainly Beta › Sandwich › Jelly Rolls › SPRY domain 0.54 44.0 3.17e-01 96.6% 58.5%
3ge2A00 2.40.128.50 Mainly Beta › Beta Barrel › Lipocalin › 0.53 44.0 3.96e-01 100.0% 79.8%
2zkmX01 2.30.29.240 Mainly Beta › Roll › PH-domain like › 0.53 41.0 3.01e-01 94.8% 55.8%
2wl1A00 2.60.120.920 Mainly Beta › Sandwich › Jelly Rolls › SPRY domain 0.53 43.0 3.12e-01 96.6% 57.6%
5xbfA03 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 40.0 3.65e-01 89.7% 81.8%
1tfkA00 3.10.450.200 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.53 41.0 3.59e-01 89.7% 56.4%
6jhpA01 2.70.98.60 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › alpha-galactosidase from lactobacil brevis 0.52 42.0 2.75e-01 94.8% 32.0%
1twfI01 2.20.25.10 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.52 36.0 3.86e-01 79.3% 93.5%
2j8gA03 2.20.120.10 Mainly Beta › Single Sheet › Multimodular pneumococcal cell wall endolysin, domain 3 › Multimodular pneumococcal cell wall endolysin, domain 3 0.52 39.0 3.92e-01 93.1% 87.9%
2ix2A01 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.52 37.0 2.55e-01 75.9% 34.4%
2psbA00 3.50.90.10 Alpha Beta › 3-Layer(bba) Sandwich › YerB-like fold › YerB-like 0.51 41.0 2.77e-01 100.0% 22.8%
1r0uA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.51 41.0 3.21e-01 94.8% 93.0%
3cpxA02 2.40.30.40 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Peptidase M42, domain 2 0.51 36.0 3.63e-01 98.3% 74.2%
3p34A02 3.30.1120.30 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › POLO box domain 0.50 41.0 3.58e-01 98.3% 80.4%
ECOD (60)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3596066 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.60 48.0 3.94e-01 96.6% 68.0%
3672647 5.1.4.297 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, NBCH_WD40 0.60 49.0 2.95e-01 93.1% 27.6%
3235272 5.1.3.9 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › OLF 0.60 51.0 3.35e-01 100.0% 40.7%
1869346 4294.1.1.1 few secondary structure elements › Trm112p-like › Trm112p-like › Trm112p-like › Rieske 0.59 48.0 4.14e-01 94.8% 91.9%
3508683 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.59 47.0 3.79e-01 94.8% 92.3%
3809547 5.1.4.297 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, NBCH_WD40 0.59 47.0 2.96e-01 91.4% 28.2%
2573549 5.1.2.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed 0.59 44.0 3.65e-01 84.5% 56.5%
185415 3459.1.1.1 beta sandwiches › Fas apoptotic inhibitory molecule › Fas apoptotic inhibitory molecule › Fas apoptotic inhibitory molecule › FAIM1 0.58 45.0 4.00e-01 87.9% 93.3%
3719371 101.1.12.0 alpha arrays › HTH › HTH › HTH motif inserted in other structures 0.58 44.0 3.54e-01 86.2% 63.2%
3963561 809.1.1.0 a+b two layers › BLIP-like › beta-lactamase-inhibitor protein, BLIP › beta-lactamase-inhibitor protein, BLIP 0.58 40.0 3.82e-01 74.1% 60.0%
3994238 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.58 46.0 3.94e-01 91.4% 75.0%
3272228 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.58 46.0 3.00e-01 89.7% 36.1%
3437840 5.1.3.118 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 0.57 48.0 3.06e-01 96.6% 84.5%
3332613 4.1.1.284 beta barrels › SH3 › SH3 › SH3 › SBNO 0.57 44.0 3.64e-01 91.4% 45.8%
3592082 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.57 45.0 4.07e-01 96.6% 74.4%
3427602 5.1.3.67 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_1 0.57 45.0 2.96e-01 94.8% 49.2%
3947081 4210.1.1.0 a+b two layers › WGR domain › WGR domain › WGR domain 0.57 43.0 4.19e-01 84.5% 90.6%
3709381 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.56 46.0 2.86e-01 100.0% 74.9%
3765767 5.1.5.110 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › Beta-prop_FAM234A_B 0.56 45.0 2.67e-01 91.4% 34.7%
1842572 6.1.1.6 beta duplicates or obligate multimers › beta-Trefoil › beta-Trefoil › beta-Trefoil › Lipoprotein_11 0.56 37.0 2.87e-01 70.7% 74.7%
3934636 5.1.5.102 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › OLF 0.56 47.0 3.14e-01 100.0% 44.5%
3458155 5.1.3.67 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_1 0.56 44.0 2.94e-01 96.6% 51.8%
3451989 5.1.3.118 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 0.55 45.0 2.94e-01 96.6% 53.4%
3816528 5.1.2.4 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed › NHL 0.55 43.0 3.22e-01 89.7% 72.1%
None 0.55 44.0 2.78e-01 93.1% 40.2%
4028948 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.55 46.0 2.79e-01 98.3% 71.4%
3992786 11.1.1.1176 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Beta-prop_Rol-3 0.54 44.0 2.89e-01 96.6% 29.8%
3505083 5.1.5.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.54 45.0 2.82e-01 96.6% 22.3%
4044230 214.1.1.1 a+b two layers › SH2 › SH2 › SH2 › SH2 0.54 45.0 3.20e-01 93.1% 77.8%
3637442 5.1.4.254 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, Beta-prop_NOL10_N 0.54 43.0 2.73e-01 94.8% 83.7%
4969321 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.54 44.0 2.82e-01 98.3% 88.7%
3477236 5.1.11.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 9-bladed 0.54 42.0 2.37e-01 93.1% 18.5%
4214195 5.1.3.19 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Hira 0.54 45.0 3.17e-01 100.0% 65.7%
3734423 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.54 42.0 2.63e-01 91.4% 25.4%
3967714 241.1.1.6 a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone › YbjN 0.54 41.0 3.17e-01 84.5% 75.7%
3544715 10.1.1.110 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › SPRY, RDM, PRY 0.54 44.0 3.12e-01 96.6% 55.0%
3812815 844.1.1.2 beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › LOR 0.54 40.0 2.96e-01 87.9% 58.4%
3175049 63.1.1.4 beta barrels › Mannose 6-phosphate receptor domain › Mannose 6-phosphate receptor domain › Mannose 6-phosphate receptor domain › PRKCSH_1 0.54 43.0 3.54e-01 100.0% 93.1%
3976843 9.11.1.1 beta barrels › Lipocalins/Streptavidin › YdhA-like › YdhA-like › MliC 0.54 43.0 3.78e-01 91.4% 92.1%
3218903 207.1.1.81 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.53 41.0 2.89e-01 87.9% 41.0%
4028185 375.1.1.19 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › RNA_POL_M_15KD 0.53 38.0 4.05e-01 79.3% 92.0%
3963560 6043.1.1.0 a+b two layers › yfeY-like › yfeY-like › yfeY-like 0.53 34.0 3.38e-01 72.4% 61.7%
3627777 71.1.1.19 beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › PF25898 0.53 43.0 3.02e-01 100.0% 47.5%
4344077 375.8.1.0 few secondary structure elements › Rubredoxin-like › Zinc-binding domain of translation initiation factor 2 beta › Zinc-binding domain of translation initiation factor 2 beta 0.53 34.0 3.68e-01 74.1% 95.0%
3423079 5.1.4.231 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › FBA_3 0.53 42.0 2.77e-01 94.8% 48.7%
4928444 219.1.1.79 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Transglut_core2 0.53 41.0 3.02e-01 89.7% 42.0%
3973152 5.1.5.9 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › Cytochrom_D1 0.53 44.0 2.76e-01 98.3% 83.0%
5041325 5.1.4.43 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › FG-GAP_3 0.53 43.0 2.68e-01 94.8% 87.0%
3659251 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.52 44.0 2.96e-01 100.0% 84.7%
3517016 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.52 42.0 2.76e-01 96.6% 40.9%
3323590 292.2.1.17 a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain › LOR 0.52 39.0 3.32e-01 86.2% 97.3%
3966121 5.1.5.9 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › Cytochrom_D1 0.52 42.0 2.67e-01 100.0% 83.6%
3250134 9.1.1.0 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.52 40.0 3.26e-01 87.9% 77.5%
4011448 4178.1.1.0 beta sandwiches › Putative glucosidase YicI, C-terminal domain › Putative glucosidase YicI, C-terminal domain › Putative glucosidase YicI, C-terminal domain 0.51 38.0 2.92e-01 84.5% 84.4%
4259070 375.13.1.1 few secondary structure elements › Rubredoxin-like › Mycobacterium tuberculosis Topoisomerase I C-terminal domain › Mycobacterium tuberculosis Topoisomerase I C-terminal domain › Toprim_C_rpt 0.51 34.0 3.59e-01 82.8% 82.0%
3500033 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.51 35.0 3.71e-01 79.3% 88.0%
4400936 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.51 38.0 3.95e-01 93.1% 100.0%
3846830 10.1.1.8 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › SPRY 0.51 42.0 3.07e-01 100.0% 60.8%
4568123 219.1.1.79 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Transglut_core2 0.50 38.0 2.82e-01 86.2% 36.6%
3379168 5.1.10.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 12-bladed 0.50 39.0 3.82e-01 91.4% 82.5%