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LacPavin_0818_WC45_scaffold_65992_prodigal-single.1__X__X__00261
Bact-VirLacPavin_0818_WC45_scaffold_65992_prodigal-single.1__X__X__00261
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 7-107
Domain cluster:
representative
CATH (33)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3k1lA01 | 3.30.457.40 | Alpha Beta › 2-Layer Sandwich › Copper Amine Oxidase; Chain A, domain 1 › | 0.67 | 51.0 | 5.31e-01 | 100.0% | 88.0% |
| 7pkwA01 | 3.10.450.540 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.66 | 33.0 | 3.36e-01 | 88.1% | 47.6% |
| 3esiA00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.66 | 50.0 | 4.68e-01 | 80.2% | 96.8% |
| 3d4eA02 | 3.30.1450.10 | Alpha Beta › 2-Layer Sandwich › Beta-lactamase Inhibitory Protein; Chain:B, domain 1 › | 0.65 | 35.0 | 3.91e-01 | 100.0% | 66.7% |
| 1mmuA00 | 2.70.98.10 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › | 0.65 | 46.0 | 3.16e-01 | 73.3% | 69.9% |
| 1srqA01 | 3.30.1120.160 | Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › | 0.64 | 42.0 | 3.77e-01 | 85.1% | 47.8% |
| 6xrbA01 | 3.40.1000.10 | Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich | 0.62 | 44.0 | 3.96e-01 | 86.1% | 53.2% |
| 7a0hA02 | 3.90.1150.210 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › F-actin capping protein, beta subunit | 0.61 | 55.0 | 4.62e-01 | 100.0% | 77.6% |
| 2nykA01 | 3.30.500.30 | Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › | 0.61 | 42.0 | 3.76e-01 | 72.3% | 90.5% |
| 3we5A00 | 3.10.110.10 | Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme | 0.61 | 54.0 | 4.86e-01 | 100.0% | 70.9% |
| 3jv1A00 | 3.10.280.10 | Alpha Beta › Roll › Mitochondrial Matrix Protein; Chain A › Mitochondrial glycoprotein | 0.61 | 47.0 | 3.90e-01 | 94.1% | 46.2% |
| 4l9cA00 | 3.40.1000.30 | Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › | 0.59 | 53.0 | 4.67e-01 | 100.0% | 73.3% |
| 3bnvD00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.58 | 44.0 | 3.92e-01 | 80.2% | 76.9% |
| 3ke7B00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.58 | 39.0 | 3.57e-01 | 70.3% | 89.5% |
| 1lkfA00 | 2.70.240.10 | Mainly Beta › Distorted Sandwich › Leukocidin-like › Leukocidin/porin MspA | 0.57 | 51.0 | 3.66e-01 | 100.0% | 98.3% |
| 2pfcA00 | 3.10.129.30 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Rv0098, thioesterase-like hot dog domain | 0.56 | 42.0 | 3.66e-01 | 80.2% | 88.1% |
| 4g59C02 | 3.30.500.30 | Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › | 0.56 | 38.0 | 3.37e-01 | 71.3% | 93.0% |
| 2bbhA01 | 3.30.460.20 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › CorA soluble domain-like | 0.55 | 37.0 | 3.29e-01 | 71.3% | 45.7% |
| 3cgbA03 | 3.30.390.30 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › FAD/NAD-linked reductase, C-terminal dimerisation domain | 0.55 | 42.0 | 4.09e-01 | 89.1% | 72.7% |
| 4fx9A03 | 3.30.390.30 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › FAD/NAD-linked reductase, C-terminal dimerisation domain | 0.55 | 41.0 | 3.97e-01 | 89.1% | 69.9% |
| 4q28A00 | 3.30.160.780 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.54 | 45.0 | 4.37e-01 | 89.1% | 100.0% |
| 1lyvA00 | 3.90.190.10 | Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily | 0.54 | 38.0 | 2.82e-01 | 73.3% | 47.7% |
| 3imhA00 | 2.70.98.10 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › | 0.53 | 46.0 | 3.31e-01 | 100.0% | 98.2% |
| 2pcsA00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.53 | 41.0 | 3.60e-01 | 84.2% | 55.3% |
| 4pn0C00 | 3.20.100.10 | Alpha Beta › Alpha-Beta Barrel › mRNA Triphosphatase Cet1; Chain A › mRNA triphosphatase Cet1-like | 0.53 | 46.0 | 3.41e-01 | 96.0% | 93.8% |
| 2z13A00 | 2.30.29.170 | Mainly Beta › Roll › PH-domain like › | 0.52 | 41.0 | 3.99e-01 | 86.1% | 73.5% |
| 1fuwA00 | 3.10.450.10 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.52 | 37.0 | 3.91e-01 | 73.3% | 100.0% |
| 6serA01 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.52 | 46.0 | 3.59e-01 | 100.0% | 75.4% |
| 1ye9A02 | 2.40.470.10 | Mainly Beta › Beta Barrel › catalase hpii fold › catalase hpii domain | 0.52 | 40.0 | 3.92e-01 | 84.2% | 96.4% |
| 1iucA00 | 2.120.10.70 | Mainly Beta › 6 Propeller › Neuraminidase › Fucose-specific lectin | 0.52 | 46.0 | 3.28e-01 | 100.0% | 59.3% |
| 1em2A00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.51 | 45.0 | 3.56e-01 | 99.0% | 82.2% |
| 3obaA05 | 2.70.98.10 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › | 0.50 | 44.0 | 3.22e-01 | 100.0% | 99.7% |
| 6m9yA00 | 3.30.1300.40 | Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › | 0.50 | 29.0 | 3.51e-01 | 83.2% | 98.2% |
ECOD (46)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4955671 | 7089.1.1.0 ↗ | a+b two layers › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD | 0.68 | 48.0 | 5.30e-01 | 87.1% | 93.8% |
| 3743439 | 897.1.1.1 ↗ | a+b two layers › Acidic mitochondrial matrix protein p32-like › Acidic mitochondrial matrix protein p32 › Acidic mitochondrial matrix protein p32 › MAM33 | 0.67 | 53.0 | 4.36e-01 | 94.1% | 46.5% |
| 4008006 | 12.3.1.6 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Bgal_small_N | 0.66 | 46.0 | 3.19e-01 | 72.3% | 66.6% |
| 5044863 | 331.9.1.0 ↗ | a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain | 0.64 | 44.0 | 4.07e-01 | 70.3% | 61.5% |
| 5047426 | 331.9.1.0 ↗ | a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain | 0.64 | 44.0 | 4.19e-01 | 91.1% | 61.7% |
| 3718216 | 4051.1.1.0 ↗ | a+b two layers › a+b domain in Capz › a+b domain in Capz › a+b domain in Capz | 0.63 | 46.0 | 4.32e-01 | 100.0% | 61.6% |
| 5047424 | 331.9.1.0 ↗ | a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain | 0.63 | 43.0 | 4.11e-01 | 92.1% | 60.0% |
| 4026900 | 331.9.1.0 ↗ | a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain | 0.62 | 44.0 | 4.20e-01 | 72.3% | 97.4% |
| 3788774 | 4051.1.1.2 ↗ | a+b two layers › a+b domain in Capz › a+b domain in Capz › a+b domain in Capz › F-actin_cap_A | 0.62 | 56.0 | 4.96e-01 | 100.0% | 78.6% |
| 5047928 | 331.9.1.0 ↗ | a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain | 0.62 | 43.0 | 4.04e-01 | 92.1% | 60.0% |
| 3699678 | 897.1.1.1 ↗ | a+b two layers › Acidic mitochondrial matrix protein p32-like › Acidic mitochondrial matrix protein p32 › Acidic mitochondrial matrix protein p32 › MAM33 | 0.61 | 48.0 | 3.90e-01 | 94.1% | 44.7% |
| 4416182 | 241.15.1.3 ↗ | a+b two layers › Type III secretory system chaperone-like › FP (Fbxo7/PI31) dimerization domain › FP (Fbxo7/PI31) dimerization domain › SPC25 | 0.60 | 50.0 | 4.96e-01 | 90.1% | 93.3% |
| 3928894 | 241.2.1.0 ↗ | a+b two layers › Type III secretory system chaperone-like › Frataxin-like › Frataxin-like | 0.60 | 50.0 | 4.00e-01 | 100.0% | 44.9% |
| 3243080 | 243.5.1.0 ↗ | a+b two layers › Cystatin-like › Amine oxidase N-terminal region › Amine oxidase N-terminal region | 0.60 | 40.0 | 4.07e-01 | 100.0% | 69.0% |
| 3653856 | 5.1.3.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed | 0.59 | 53.0 | 3.68e-01 | 99.0% | 72.5% |
| 3351597 | 5.1.3.118 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 | 0.59 | 52.0 | 3.63e-01 | 99.0% | 40.9% |
| 3427875 | 241.15.1.2 ↗ | a+b two layers › Type III secretory system chaperone-like › FP (Fbxo7/PI31) dimerization domain › FP (Fbxo7/PI31) dimerization domain › PI31_Prot_N | 0.59 | 53.0 | 4.60e-01 | 100.0% | 76.8% |
| 3199793 | 5.1.5.179 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › Clathrin-link | 0.59 | 51.0 | 3.58e-01 | 98.0% | 69.9% |
| 5075303 | 844.1.1.0 ↗ | beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain | 0.58 | 47.0 | 3.58e-01 | 99.0% | 37.0% |
| 4403206 | 4051.1.1.2 ↗ | a+b two layers › a+b domain in Capz › a+b domain in Capz › a+b domain in Capz › F-actin_cap_A | 0.58 | 52.0 | 4.55e-01 | 100.0% | 65.8% |
| 3739953 | 4051.1.1.2 ↗ | a+b two layers › a+b domain in Capz › a+b domain in Capz › a+b domain in Capz › F-actin_cap_A | 0.58 | 52.0 | 4.54e-01 | 100.0% | 67.1% |
| 3658278 | 5.1.3.142 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Beta-prop_AT5G49610-like | 0.58 | 52.0 | 3.62e-01 | 98.0% | 48.8% |
| 4034609 | 4056.1.1.1 ↗ | beta barrels › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Phage_prot_Gp6 | 0.57 | 41.0 | 4.07e-01 | 80.2% | 70.9% |
| 3391461 | 3308.2.1.1 ↗ | beta duplicates or obligate multimers › periplasmic lysozyme inhibitor of I-type lysozyme-like › XAC2610 protein › XAC2610 protein › 4_1_CTD | 0.56 | 40.0 | 4.57e-01 | 76.2% | 100.0% |
| 5033392 | 246.2.1.1 ↗ | a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos | 0.56 | 42.0 | 2.98e-01 | 78.2% | 92.6% |
| 3823551 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.56 | 40.0 | 3.58e-01 | 74.3% | 75.9% |
| 3451758 | 243.5.1.1 ↗ | a+b two layers › Cystatin-like › Amine oxidase N-terminal region › Amine oxidase N-terminal region › Cu_amine_oxidN2 | 0.56 | 44.0 | 4.36e-01 | 82.2% | 97.1% |
| 4018089 | 4099.1.1.0 ↗ | a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like | 0.56 | 49.0 | 4.68e-01 | 100.0% | 91.7% |
| 4360453 | 11.13.1.1 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Leukocidin-like › Leukocidin-like › Leukocidin | 0.55 | 49.0 | 3.52e-01 | 98.0% | 98.6% |
| 5045702 | 2003.1.5.81 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 | 0.54 | 43.0 | 3.23e-01 | 84.2% | 93.6% |
| 3923143 | 633.23.1.17 ↗ | alpha bundles › Bromodomain-like › Claudin › Claudin › DuoxA | 0.54 | 45.0 | 3.45e-01 | 91.1% | 67.9% |
| 4346250 | 4099.1.1.0 ↗ | a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like | 0.54 | 47.0 | 4.25e-01 | 100.0% | 85.0% |
| 4997740 | 331.9.1.0 ↗ | a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain | 0.53 | 44.0 | 3.93e-01 | 88.1% | 91.4% |
| 3972133 | 2003.1.5.81 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 | 0.53 | 42.0 | 3.18e-01 | 84.2% | 93.8% |
| 3706524 | 5.1.2.33 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed › BNR_3 | 0.53 | 47.0 | 3.39e-01 | 97.0% | 53.2% |
| 5011932 | 330.2.1.5 ↗ | a+b two layers › dsRBD-like › Ribosome binding protein Y (YfiA homologue) › Ribosome binding protein Y (YfiA homologue) › PF29181 | 0.53 | 43.0 | 4.25e-01 | 94.1% | 83.8% |
| 3589839 | 12.3.1.3 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Aldose_epim | 0.53 | 46.0 | 3.27e-01 | 100.0% | 92.5% |
| 4022543 | 225.1.1.0 ↗ | a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase | 0.53 | 45.0 | 3.43e-01 | 93.1% | 86.4% |
| 3941070 | 2004.1.1.87 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N | 0.52 | 47.0 | 3.27e-01 | 98.0% | 39.1% |
| 5075859 | 330.2.1.5 ↗ | a+b two layers › dsRBD-like › Ribosome binding protein Y (YfiA homologue) › Ribosome binding protein Y (YfiA homologue) › PF29181 | 0.52 | 44.0 | 4.33e-01 | 100.0% | 86.4% |
| 4970559 | 330.2.1.5 ↗ | a+b two layers › dsRBD-like › Ribosome binding protein Y (YfiA homologue) › Ribosome binding protein Y (YfiA homologue) › PF29181 | 0.52 | 43.0 | 4.39e-01 | 97.0% | 93.0% |
| 3740622 | 12.3.1.3 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Aldose_epim | 0.52 | 46.0 | 3.18e-01 | 100.0% | 90.3% |
| 3926131 | 331.3.1.3 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › START | 0.51 | 46.0 | 3.48e-01 | 100.0% | 69.5% |
| 3583345 | 5.1.4.288 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › APEH_N | 0.51 | 45.0 | 2.99e-01 | 100.0% | 73.0% |
| 3587070 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.51 | 42.0 | 3.70e-01 | 89.1% | 88.3% |
| 2724186 | 243.1.1.67 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › Cds6_C | 0.51 | 36.0 | 3.44e-01 | 74.3% | 97.5% |