←Back to structures
LacPavin_0818_WC45_scaffold_65992_prodigal-single.1__X__X__00263
Bact-VirLacPavin_0818_WC45_scaffold_65992_prodigal-single.1__X__X__00263
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 4-150
Domain cluster:
representative
CATH (12)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2rqlA00 | 3.30.160.100 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Ribosome hibernation promotion factor-like | 0.59 | 37.0 | 4.40e-01 | 89.1% | 94.7% |
| 2xn1A01 | 2.70.98.60 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › alpha-galactosidase from lactobacil brevis | 0.59 | 40.0 | 3.14e-01 | 70.1% | 97.4% |
| 6f1uK02 | 3.90.1150.210 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › F-actin capping protein, beta subunit | 0.58 | 50.0 | 5.05e-01 | 92.5% | 96.6% |
| 3aa0B02 | 3.90.1150.210 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › F-actin capping protein, beta subunit | 0.57 | 50.0 | 4.97e-01 | 95.9% | 100.0% |
| 1dbzA01 | 3.30.540.10 | Alpha Beta › 2-Layer Sandwich › Fructose-1,6-Bisphosphatase; Chain A, domain 1 › Fructose-1,6-Bisphosphatase, subunit A, domain 1 | 0.55 | 41.0 | 3.82e-01 | 78.2% | 61.4% |
| 1ulvA01 | 2.70.98.10 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › | 0.54 | 39.0 | 3.20e-01 | 74.8% | 79.8% |
| 1lf6A01 | 2.70.98.10 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › | 0.53 | 39.0 | 3.20e-01 | 75.5% | 79.9% |
| 6secA03 | 2.70.98.10 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › | 0.53 | 37.0 | 3.01e-01 | 72.8% | 99.3% |
| 1yq2A05 | 2.70.98.10 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › | 0.53 | 37.0 | 2.90e-01 | 70.7% | 97.0% |
| 4jglA00 | 2.40.128.530 | Mainly Beta › Beta Barrel › Lipocalin › | 0.52 | 37.0 | 3.66e-01 | 72.1% | 81.6% |
| 3ecrB03 | 3.30.160.40 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Porphobilinogen deaminase, C-terminal domain | 0.52 | 35.0 | 4.01e-01 | 86.4% | 98.0% |
| 2xsgB01 | 2.70.98.10 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › | 0.51 | 37.0 | 3.01e-01 | 75.5% | 96.5% |
ECOD (22)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3760326 | 3291.1.1.50 ↗ | alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › FmiP_Thoc5 | 0.67 | 51.0 | 4.84e-01 | 80.3% | 98.9% |
| 4426077 | 241.1.1.2 ↗ | a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone › Autophagy_act_C | 0.63 | 48.0 | 4.73e-01 | 79.6% | 96.1% |
| 4531971 | 216.1.1.2 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like › Autophagy_act_C | 0.62 | 48.0 | 4.49e-01 | 80.3% | 93.8% |
| 4438684 | 330.4.1.1 ↗ | a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC | 0.60 | 35.0 | 4.33e-01 | 88.4% | 96.4% |
| 3512529 | 216.1.1.2 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like › Autophagy_act_C | 0.60 | 46.0 | 4.51e-01 | 80.3% | 95.6% |
| 3204911 | 216.1.1.20 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like › UBC_like | 0.60 | 43.0 | 4.72e-01 | 80.3% | 90.8% |
| 4262169 | 330.4.1.1 ↗ | a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC | 0.59 | 36.0 | 4.30e-01 | 87.8% | 94.6% |
| 4954762 | 241.1.1.0 ↗ | a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone | 0.58 | 46.0 | 4.92e-01 | 82.3% | 96.8% |
| 4434012 | 330.4.1.1 ↗ | a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC | 0.58 | 32.0 | 4.03e-01 | 79.6% | 92.9% |
| 4944535 | 12.3.1.0 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich | 0.57 | 41.0 | 3.23e-01 | 72.8% | 89.7% |
| 3679340 | 216.1.1.0 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like | 0.57 | 41.0 | 4.64e-01 | 78.9% | 100.0% |
| 3056279 | 4051.1.1.2 ↗ | a+b two layers › a+b domain in Capz › a+b domain in Capz › a+b domain in Capz › F-actin_cap_A | 0.56 | 49.0 | 4.80e-01 | 95.9% | 92.6% |
| 4330094 | 330.4.1.1 ↗ | a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC | 0.56 | 34.0 | 4.14e-01 | 83.0% | 97.8% |
| 3181792 | 331.3.1.6 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › PRELI | 0.55 | 40.0 | 3.59e-01 | 74.1% | 96.0% |
| 5047928 | 331.9.1.0 ↗ | a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain | 0.55 | 33.0 | 3.66e-01 | 73.5% | 73.3% |
| 2022 | 12.3.1.16 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Glucodextran_N | 0.54 | 39.0 | 3.18e-01 | 74.8% | 78.0% |
| 4857362 | 12.3.1.25 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Glyco_hydro_36N | 0.54 | 38.0 | 2.95e-01 | 72.8% | 92.6% |
| 3239059 | 4210.1.1.1 ↗ | a+b two layers › WGR domain › WGR domain › WGR domain › WGR | 0.54 | 40.0 | 4.39e-01 | 85.0% | 94.2% |
| 5015089 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.51 | 39.0 | 3.37e-01 | 81.6% | 68.6% |
| 3740523 | 331.3.1.6 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › PRELI | 0.51 | 38.0 | 3.70e-01 | 77.6% | 85.5% |
| 3837684 | 10.1.1.2 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Lectin_legB | 0.51 | 38.0 | 3.25e-01 | 76.9% | 95.4% |
| 3924310 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.51 | 38.0 | 2.87e-01 | 78.2% | 86.2% |