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LacPavin_0818_WC45_scaffold_65992_prodigal-single.1__X__X__00339

Bact-Vir

LacPavin_0818_WC45_scaffold_65992_prodigal-single.1__X__X__00339

Identity

Kingdom:
phage

Quality

74.2 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 30-82
PDB
Domain cluster: representative
CATH (23)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1oaiA00 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.75 49.0 4.77e-01 71.7% 61.0%
6kikA00 3.20.20.100 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › NADP-dependent oxidoreductase domain 0.68 41.0 2.58e-01 77.4% 11.3%
1t07A00 1.10.3880.10 Mainly Alpha › Orthogonal Bundle › YggX-like › Fe(II) trafficking protein YggX 0.62 46.0 4.08e-01 83.0% 72.8%
2ejsA00 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.61 39.0 3.88e-01 77.4% 60.3%
1pgjA02 1.10.1040.10 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.59 46.0 3.01e-01 88.7% 79.5%
1x57A00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.59 41.0 3.52e-01 73.6% 67.0%
3h4cA01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.59 44.0 3.70e-01 83.0% 61.5%
3ly1A02 3.40.640.10 Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) 0.59 41.0 2.77e-01 75.5% 88.4%
2g8lA02 1.10.285.20 Mainly Alpha › Orthogonal Bundle › Glutamate Dehydrogenase; Chain A, domain 3 › Uncharacterised protein PF01937, DUF89, domain 2 0.57 39.0 3.71e-01 75.5% 58.5%
2bg1A01 3.90.1310.40 Alpha Beta › Alpha-Beta Complex › Penicillin-binding protein 2a (Domain 2) › 0.56 39.0 3.53e-01 75.5% 57.1%
1cpyA02 1.10.287.410 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.55 41.0 3.76e-01 83.0% 98.6%
1lliA00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.55 38.0 3.37e-01 77.4% 58.4%
1xb2B01 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.54 41.0 4.00e-01 94.3% 76.7%
6z01B01 1.10.10.41 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Yeast DNA topoisomerase - domain 1 0.54 39.0 3.46e-01 77.4% 52.6%
2bnkA00 1.10.8.600 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Phage phi29 replication organiser protein p16.7-like 0.54 38.0 3.74e-01 88.7% 68.8%
2pusA04 6.10.140.300 Special › Helix non-globular › Helix Hairpins › 0.54 35.0 2.83e-01 77.4% 32.4%
1vwxQ00 3.100.10.10 Alpha Beta › Ribosomal Protein L15; Chain: K; domain 2 › Ribosomal Protein L15; Chain: K; domain 2 › 0.53 43.0 3.05e-01 96.2% 79.7%
2rp4A00 6.10.280.60 Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Transcription factor p53, C-terminal domain 0.52 37.0 3.38e-01 79.2% 56.3%
4g6dB02 6.10.140.1800 Special › Helix non-globular › Helix Hairpins › 0.52 40.0 3.65e-01 94.3% 71.6%
2ewtA00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.51 37.0 3.39e-01 77.4% 71.8%
3cq4A02 3.40.640.10 Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) 0.51 37.0 2.54e-01 83.0% 48.5%
2wyhB04 1.20.1270.50 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Glycoside hydrolase family 38, central domain 0.50 38.0 3.18e-01 86.8% 80.2%
1w36C06 1.10.10.990 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.50 36.0 3.40e-01 83.0% 61.1%
ECOD (10)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4241104 129.1.1.11 ↗ alpha arrays › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › ApbA_C 0.74 53.0 4.35e-01 77.4% 46.0%
3627610 1021.1.1.0 ↗ a+b two layers › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases 0.68 49.0 4.07e-01 77.4% 87.4%
3385527 148.1.3.55 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › Mg_chelatase_C 0.63 44.0 4.25e-01 73.6% 81.7%
4162480 377.5.1.1 ↗ few secondary structure elements › Glucocorticoid receptor-like › YggX-like (Pfam 04362) › YggX-like (Pfam 04362) › Iron_traffic 0.62 45.0 4.06e-01 79.2% 72.0%
3186625 212.1.1.34 ↗ a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › EFL1 0.62 45.0 3.00e-01 79.2% 19.5%
3429326 101.1.3.15 ↗ alpha arrays › HTH › HTH › tetra-helical, LuxR-like › Myb_DNA-binding 0.58 45.0 3.61e-01 88.7% 58.3%
3804346 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.58 41.0 3.87e-01 79.2% 65.7%
3821495 101.1.1.3 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-binding 0.58 46.0 3.67e-01 94.3% 59.2%
4669986 4198.1.1.0 ↗ alpha arrays › TerB-like › TerB-like › TerB-like 0.56 45.0 3.44e-01 98.1% 84.1%
3505644 101.1.1.3 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-binding 0.55 39.0 3.75e-01 75.5% 95.4%