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LacPavin_0818_WC45_scaffold_65992_prodigal-single.1__X__X__00343

Bact-Vir

LacPavin_0818_WC45_scaffold_65992_prodigal-single.1__X__X__00343

Identity

Kingdom:
phage

Quality

78.0 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 36-148
PDB
CATH (48)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3dzmB00 2.40.160.70 Mainly Beta › Beta Barrel › Porin › outer membrane protein from Thermus thermophilus HB27. 0.80 76.0 6.06e-01 100.0% 99.0%
6x1kA01 2.40.160.20 Mainly Beta › Beta Barrel › Porin › 0.78 72.0 7.23e-01 99.1% 100.0%
1qj8A00 2.40.160.20 Mainly Beta › Beta Barrel › Porin › 0.73 67.0 6.11e-01 100.0% 100.0%
1u17A00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.68 62.0 5.21e-01 99.1% 67.6%
1fw3A00 2.40.230.10 Mainly Beta › Beta Barrel › Outer membrane phospholipase (ompla); Chain C › Phospholipase A1 0.66 61.0 4.64e-01 100.0% 97.6%
3qq2B00 2.40.128.130 Mainly Beta › Beta Barrel › Lipocalin › Autotransporter beta-domain 0.65 61.0 4.60e-01 100.0% 100.0%
3kvnA02 2.40.128.130 Mainly Beta › Beta Barrel › Lipocalin › Autotransporter beta-domain 0.64 59.0 4.25e-01 100.0% 87.7%
6wilA01 2.40.160.50 Mainly Beta › Beta Barrel › Porin › membrane protein fhac: a member of the omp85/tpsb transporter family 0.62 55.0 3.88e-01 96.5% 94.0%
4c00A04 2.40.160.50 Mainly Beta › Beta Barrel › Porin › membrane protein fhac: a member of the omp85/tpsb transporter family 0.62 54.0 3.93e-01 95.6% 97.5%
4e1sA00 2.40.160.160 Mainly Beta › Beta Barrel › Porin › Inverse autotransporter, beta-domain 0.62 57.0 4.41e-01 100.0% 93.8%
3rd7A00 2.40.160.210 Mainly Beta › Beta Barrel › Porin › Acyl-CoA thioesterase, double hotdog domain 0.61 44.0 3.29e-01 74.3% 86.5%
2wjqA00 2.40.160.40 Mainly Beta › Beta Barrel › Porin › monomeric porin ompg 0.61 55.0 4.49e-01 98.2% 100.0%
3ia8A00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.61 55.0 4.86e-01 100.0% 98.1%
4gf4A00 2.40.160.180 Mainly Beta › Beta Barrel › Porin › Carbohydrate-selective porin OprB 0.59 52.0 3.81e-01 94.7% 89.6%
4fqeA00 2.40.160.40 Mainly Beta › Beta Barrel › Porin › monomeric porin ompg 0.59 53.0 4.65e-01 98.2% 99.4%
3bryA00 2.40.160.60 Mainly Beta › Beta Barrel › Porin › Outer membrane protein transport protein (OMPP1/FadL/TodX) 0.58 51.0 3.53e-01 97.3% 97.9%
3gekA00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.56 41.0 3.92e-01 75.2% 97.7%
3rqbA00 2.40.160.210 Mainly Beta › Beta Barrel › Porin › Acyl-CoA thioesterase, double hotdog domain 0.56 45.0 3.41e-01 85.0% 88.6%
3bgaA05 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.56 50.0 3.74e-01 97.3% 97.0%
6fokB01 2.40.170.20 Mainly Beta › Beta Barrel › Maltoporin; Chain A › TonB-dependent receptor, beta-barrel domain 0.55 48.0 3.05e-01 97.3% 99.1%
4qfwA00 2.40.160.210 Mainly Beta › Beta Barrel › Porin › Acyl-CoA thioesterase, double hotdog domain 0.55 44.0 3.37e-01 85.0% 89.4%
3bbjA00 2.40.160.210 Mainly Beta › Beta Barrel › Porin › Acyl-CoA thioesterase, double hotdog domain 0.55 44.0 3.34e-01 85.0% 90.3%
1bh3A00 2.40.160.10 Mainly Beta › Beta Barrel › Porin › Porin 0.55 47.0 3.52e-01 93.8% 96.5%
3f1tB00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.55 42.0 3.96e-01 80.5% 99.3%
3cjyA00 2.40.160.210 Mainly Beta › Beta Barrel › Porin › Acyl-CoA thioesterase, double hotdog domain 0.55 43.0 3.36e-01 85.0% 90.9%
3e29B00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.54 42.0 4.01e-01 82.3% 96.3%
2qwzA01 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.54 42.0 3.95e-01 80.5% 99.2%
1z6bA00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.54 43.0 3.99e-01 84.1% 94.4%
2porA00 2.40.160.10 Mainly Beta › Beta Barrel › Porin › Porin 0.54 48.0 3.52e-01 97.3% 56.5%
3rd6A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.54 48.0 4.45e-01 99.1% 81.9%
2w4yA00 2.40.160.220 Mainly Beta › Beta Barrel › Porin › 0.53 39.0 3.87e-01 95.6% 71.3%
2fs2B00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.53 40.0 3.82e-01 80.5% 99.3%
2cy9B00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.53 41.0 3.93e-01 81.4% 99.2%
3d6xB00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.53 42.0 3.93e-01 84.1% 95.7%
3kg6C00 3.10.129.110 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Polyketide synthase dehydratase 0.53 41.0 3.15e-01 84.1% 86.3%
2ciqA00 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.53 46.0 3.46e-01 97.3% 97.9%
2hdiA02 2.40.170.20 Mainly Beta › Beta Barrel › Maltoporin; Chain A › TonB-dependent receptor, beta-barrel domain 0.53 46.0 3.04e-01 94.7% 98.3%
3bdrA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.52 48.0 4.27e-01 100.0% 91.7%
4ae8D00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.52 39.0 3.45e-01 77.9% 82.4%
3r87A00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.52 39.0 3.74e-01 78.8% 100.0%
3efmA02 2.40.170.20 Mainly Beta › Beta Barrel › Maltoporin; Chain A › TonB-dependent receptor, beta-barrel domain 0.52 45.0 3.01e-01 93.8% 97.5%
3k67A00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.52 41.0 3.70e-01 84.1% 84.0%
2zf3C00 2.50.20.30 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › 0.52 46.0 3.99e-01 100.0% 90.1%
1sbkA00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.52 38.0 3.66e-01 78.8% 100.0%
3u0aA00 2.40.160.210 Mainly Beta › Beta Barrel › Porin › Acyl-CoA thioesterase, double hotdog domain 0.52 41.0 3.17e-01 85.0% 89.1%
3dkzA00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.52 41.0 3.98e-01 84.1% 98.4%
3lbeB00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.51 40.0 3.90e-01 82.3% 93.5%
3kuvB00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.51 38.0 3.61e-01 78.8% 91.0%
ECOD (63)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2716251 5084.1.1.10 beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › OMP_b-brl 0.82 78.0 7.65e-01 100.0% 96.7%
3506244 5084.1.1.16 beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › Ail_Lom 0.74 69.0 5.87e-01 100.0% 99.4%
None 0.73 67.0 6.11e-01 100.0% 100.0%
3974058 5084.5.1.28 beta barrels › Outer membrane meander beta-barrels › Porins › Porin › CopB 0.69 64.0 5.09e-01 99.1% 97.1%
3976052 5084.4.1.1 beta barrels › Outer membrane meander beta-barrels › Outer membrane phospholipase A (OMPLA) › Outer membrane phospholipase A (OMPLA) › PLA1 0.66 61.0 4.62e-01 100.0% 96.9%
3965077 5084.4.1.1 beta barrels › Outer membrane meander beta-barrels › Outer membrane phospholipase A (OMPLA) › Outer membrane phospholipase A (OMPLA) › PLA1 0.66 60.0 4.51e-01 99.1% 97.8%
3964155 5084.1.1.0 beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like 0.65 59.0 4.45e-01 98.2% 99.6%
3976425 5084.5.1.8 beta barrels › Outer membrane meander beta-barrels › Porins › Porin › KdgM 0.64 59.0 4.77e-01 100.0% 98.1%
382272 5084.3.1.1 beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter › Autotransporter 0.64 59.0 4.23e-01 100.0% 85.7%
3978431 5084.3.1.2 beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter › IAT_beta 0.64 57.0 4.40e-01 97.3% 89.2%
3971597 5084.5.1.5 beta barrels › Outer membrane meander beta-barrels › Porins › Porin › ShlB 0.63 55.0 3.89e-01 94.7% 96.6%
4345340 5084.3.1.1 beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter › Autotransporter 0.62 58.0 4.19e-01 100.0% 91.9%
3983528 5084.3.1.2 beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter › IAT_beta 0.62 58.0 4.41e-01 100.0% 92.7%
4136508 5084.3.1.1 beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter › Autotransporter 0.62 55.0 3.93e-01 96.5% 93.0%
3968806 5084.5.1.68 beta barrels › Outer membrane meander beta-barrels › Porins › Porin › PF27733 0.62 57.0 4.61e-01 100.0% 96.2%
4009646 5084.3.1.2 beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter › IAT_beta 0.61 57.0 4.14e-01 100.0% 78.0%
4005087 5084.5.1.8 beta barrels › Outer membrane meander beta-barrels › Porins › Porin › KdgM 0.61 56.0 4.39e-01 100.0% 93.1%
4508983 5084.5.1.18 beta barrels › Outer membrane meander beta-barrels › Porins › Porin › BCSC_C 0.60 47.0 3.15e-01 81.4% 37.4%
3961758 331.3.1.7 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › COXG 0.60 54.0 4.95e-01 100.0% 82.7%
4449332 5084.5.1.18 beta barrels › Outer membrane meander beta-barrels › Porins › Porin › BCSC_C 0.60 51.0 3.64e-01 92.9% 96.2%
3981236 5084.5.4.6 beta barrels › Outer membrane meander beta-barrels › Porins › Outer membrane protein transport protein › TraF_2 0.60 53.0 3.95e-01 98.2% 94.1%
1298172 5084.5.1.8 beta barrels › Outer membrane meander beta-barrels › Porins › Porin › KdgM 0.59 53.0 4.60e-01 98.2% 98.8%
3941948 5084.5.1.18 beta barrels › Outer membrane meander beta-barrels › Porins › Porin › BCSC_C 0.58 54.0 3.87e-01 100.0% 99.0%
3472948 9.1.1.49 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › DUF7043 0.58 52.0 4.94e-01 99.1% 95.5%
4622159 5084.5.1.35 beta barrels › Outer membrane meander beta-barrels › Porins › Porin › Porin_2 0.58 51.0 3.64e-01 97.3% 47.6%
3706756 5084.5.1.0 beta barrels › Outer membrane meander beta-barrels › Porins › Porin 0.57 45.0 3.32e-01 82.3% 41.5%
4670451 5084.5.4.9 beta barrels › Outer membrane meander beta-barrels › Porins › Outer membrane protein transport protein › UPF0164 0.57 52.0 3.71e-01 100.0% 82.7%
3412367 331.3.1.17 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › VASt 0.57 49.0 4.23e-01 95.6% 79.0%
4184524 5084.5.1.18 beta barrels › Outer membrane meander beta-barrels › Porins › Porin › BCSC_C 0.57 48.0 3.41e-01 94.7% 30.3%
3644755 5084.5.1.23 beta barrels › Outer membrane meander beta-barrels › Porins › Porin › TOC159_MAD 0.56 45.0 3.31e-01 86.7% 70.8%
3407004 331.3.1.17 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › VASt 0.56 48.0 3.91e-01 95.6% 65.0%
2799093 5084.5.1.3 beta barrels › Outer membrane meander beta-barrels › Porins › Porin › Porin_3 0.56 43.0 3.19e-01 81.4% 91.8%
4984404 331.3.1.7 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › COXG 0.56 49.0 4.52e-01 98.2% 81.8%
3645939 5084.5.1.33 beta barrels › Outer membrane meander beta-barrels › Porins › Porin › DNAJC11_beta-barrel 0.56 49.0 3.80e-01 96.5% 89.6%
3976823 5084.8.1.1 beta barrels › Outer membrane meander beta-barrels › Usher PapC translocation pore › Usher PapC translocation pore › Usher 0.56 47.0 3.14e-01 90.3% 85.2%
3282748 222.1.1.4 a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › 4HBT 0.55 44.0 3.97e-01 83.2% 94.0%
3761947 5084.5.1.33 beta barrels › Outer membrane meander beta-barrels › Porins › Porin › DNAJC11_beta-barrel 0.55 48.0 3.53e-01 93.8% 83.4%
4591679 5084.5.1.18 beta barrels › Outer membrane meander beta-barrels › Porins › Porin › BCSC_C 0.55 46.0 3.30e-01 92.9% 96.7%
3748213 331.3.1.17 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › VASt 0.55 47.0 3.59e-01 96.5% 52.1%
3507449 331.3.1.17 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › VASt 0.54 47.0 3.93e-01 96.5% 71.7%
3544803 331.3.1.17 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › VASt 0.54 47.0 3.95e-01 95.6% 73.3%
3818841 331.3.1.17 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › VASt 0.54 47.0 4.02e-01 97.3% 75.3%
3508754 5084.5.1.33 beta barrels › Outer membrane meander beta-barrels › Porins › Porin › DNAJC11_beta-barrel 0.54 47.0 3.67e-01 95.6% 96.3%
3980825 5084.8.1.1 beta barrels › Outer membrane meander beta-barrels › Usher PapC translocation pore › Usher PapC translocation pore › Usher 0.54 45.0 2.99e-01 90.3% 85.1%
3970321 222.1.1.15 a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › 4HBT_3C 0.53 40.0 3.62e-01 79.6% 84.4%
3270456 331.3.1.17 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › VASt 0.53 47.0 3.96e-01 98.2% 73.3%
3952882 331.3.1.27 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › DUF2505 0.53 47.0 4.12e-01 100.0% 85.1%
3944999 5084.8.1.0 beta barrels › Outer membrane meander beta-barrels › Usher PapC translocation pore › Usher PapC translocation pore 0.53 44.0 2.92e-01 88.5% 84.4%
4010676 5084.8.1.1 beta barrels › Outer membrane meander beta-barrels › Usher PapC translocation pore › Usher PapC translocation pore › Usher 0.53 45.0 3.01e-01 90.3% 84.9%
3275961 331.3.1.17 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › VASt 0.53 46.0 3.88e-01 98.2% 91.0%
4007182 222.1.1.4 a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › 4HBT 0.53 40.0 3.80e-01 80.5% 98.5%
3945603 5084.8.1.1 beta barrels › Outer membrane meander beta-barrels › Usher PapC translocation pore › Usher PapC translocation pore › Usher 0.53 44.0 2.92e-01 89.4% 85.8%
3626881 5084.5.1.33 beta barrels › Outer membrane meander beta-barrels › Porins › Porin › DNAJC11_beta-barrel 0.52 46.0 3.39e-01 96.5% 80.7%
5035179 12.3.1.0 beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich 0.52 45.0 3.27e-01 98.2% 91.2%
3961612 881.1.1.8 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › PknH_C 0.52 43.0 3.64e-01 93.8% 71.1%
4107065 11.1.1.11 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Usher 0.51 44.0 2.93e-01 94.7% 40.4%
3286194 222.1.1.4 a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › 4HBT 0.51 37.0 3.50e-01 76.1% 95.0%
4028624 5084.5.1.3 beta barrels › Outer membrane meander beta-barrels › Porins › Porin › Porin_3 0.51 45.0 3.35e-01 97.3% 70.3%
3827592 5084.5.1.3 beta barrels › Outer membrane meander beta-barrels › Porins › Porin › Porin_3 0.51 44.0 3.91e-01 97.3% 66.5%
3723887 222.1.1.4 a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › 4HBT 0.51 38.0 3.28e-01 78.8% 87.2%
3804993 5084.5.1.0 beta barrels › Outer membrane meander beta-barrels › Porins › Porin 0.51 44.0 3.23e-01 97.3% 43.8%
3581297 5084.5.1.3 beta barrels › Outer membrane meander beta-barrels › Porins › Porin › Porin_3 0.50 38.0 3.10e-01 89.4% 41.9%
3693449 222.1.1.4 a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › 4HBT 0.50 38.0 3.31e-01 80.5% 82.2%