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LacPavin_0818_WC45_scaffold_65992_prodigal-single.1__X__X__00375
Bact-VirLacPavin_0818_WC45_scaffold_65992_prodigal-single.1__X__X__00375
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 11-57
Domain cluster:
representative
CATH (8)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2oebA00 | 1.10.520.30 | Mainly Alpha › Orthogonal Bundle › Peroxidase; domain 1 › AF1862-like domain | 0.61 | 53.0 | 3.74e-01 | 100.0% | 90.8% |
| 1y42X01 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.58 | 52.0 | 3.20e-01 | 100.0% | 18.4% |
| 1amuA01 | 3.40.50.980 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.56 | 46.0 | 3.19e-01 | 93.6% | 33.9% |
| 1stzA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.56 | 41.0 | 3.38e-01 | 78.7% | 52.9% |
| 2iusA02 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.56 | 50.0 | 3.02e-01 | 100.0% | 31.6% |
| 7bv3A01 | 3.40.50.2000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; | 0.54 | 44.0 | 2.74e-01 | 89.4% | 93.4% |
| 5t1dB00 | 3.10.390.20 | Alpha Beta › Roll › SAND domain › Viral glycoprotein L | 0.52 | 46.0 | 3.58e-01 | 100.0% | 51.5% |
| 1zkeA00 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.51 | 44.0 | 3.77e-01 | 100.0% | 75.3% |
ECOD (8)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1503778 | 3568.1.1.1 ↗ | extended segments › Splicing factor 1 N-terminal domain › Splicing factor 1 N-terminal domain › Splicing factor 1 N-terminal domain › SF1-HH | 0.70 | 49.0 | 3.60e-01 | 91.5% | 28.9% |
| 4954786 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.60 | 52.0 | 4.33e-01 | 100.0% | 82.4% |
| 3878389 | 2004.1.1.36 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Dynamin_N | 0.59 | 48.0 | 2.68e-01 | 100.0% | 24.4% |
| 5071210 | 213.1.1.0 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) | 0.58 | 41.0 | 2.85e-01 | 97.9% | 22.5% |
| 3926957 | 605.1.1.170 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › Tmemb_18A | 0.54 | 47.0 | 4.18e-01 | 100.0% | 72.9% |
| 3643041 | 3186.1.1.0 ↗ | a+b two layers › C-terminal domain of FliK › C-terminal domain of FliK › C-terminal domain of FliK | 0.54 | 47.0 | 3.44e-01 | 100.0% | 63.8% |
| 3497740 | 376.1.1.20 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_UBOX | 0.53 | 45.0 | 3.66e-01 | 100.0% | 58.9% |
| 3879957 | 601.19.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › Apolipoprotein › Apolipoprotein | 0.52 | 42.0 | 2.78e-01 | 100.0% | 40.0% |
D2
high
residues 62-158
Domain cluster:
rep: IMGVR_UViG_3300018412_000002-3300018412-Ga0194136_100007920__D2-82
ECOD (2)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3502657 | 108.1.1.27 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_6 | 0.62 | 45.0 | 3.74e-01 | 76.3% | 76.6% |
| 3556488 | 2003.1.9.1 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Activating enzymes of the ubiquitin-like proteins › ThiF | 0.51 | 39.0 | 2.52e-01 | 83.5% | 27.2% |