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LacPavin_0818_WC45_scaffold_65992_prodigal-single.1__X__X__00376
Bact-VirLacPavin_0818_WC45_scaffold_65992_prodigal-single.1__X__X__00376
Identity
- Kingdom:
- phage
Quality
80.9
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 38-121
Domain cluster:
representative
CATH (13)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1zboA01 | 2.30.130.40 | Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › LON domain-like | 0.59 | 44.0 | 4.04e-01 | 81.0% | 83.2% |
| 1ly2A02 | 2.10.70.10 | Mainly Beta › Ribbon › Complement Module; domain 1 › Complement Module, domain 1 | 0.58 | 30.0 | 3.49e-01 | 100.0% | 67.8% |
| 1g44C04 | 2.10.70.10 | Mainly Beta › Ribbon › Complement Module; domain 1 › Complement Module, domain 1 | 0.58 | 30.0 | 3.69e-01 | 100.0% | 92.9% |
| 5yrzB00 | 3.30.920.30 | Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Hypothetical protein. | 0.58 | 28.0 | 3.22e-01 | 100.0% | 62.1% |
| 3t5oA03 | 2.10.70.10 | Mainly Beta › Ribbon › Complement Module; domain 1 › Complement Module, domain 1 | 0.57 | 31.0 | 3.46e-01 | 100.0% | 67.7% |
| 2wiiC04 | 2.10.70.10 | Mainly Beta › Ribbon › Complement Module; domain 1 › Complement Module, domain 1 | 0.56 | 30.0 | 3.45e-01 | 100.0% | 71.9% |
| 1h70A00 | 3.75.10.10 | Alpha Beta › 5-stranded Propeller › L-arginine/glycine Amidinotransferase; Chain A › L-arginine/glycine Amidinotransferase; Chain A | 0.55 | 48.0 | 3.47e-01 | 98.8% | 59.2% |
| 2xcqA01 | 3.40.50.670 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.54 | 43.0 | 3.40e-01 | 88.1% | 78.2% |
| 3mogA03 | 3.30.750.190 | Alpha Beta › 2-Layer Sandwich › Transcription Regulator spoIIAA › | 0.54 | 40.0 | 3.88e-01 | 100.0% | 71.3% |
| 4k30A00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.53 | 47.0 | 3.91e-01 | 100.0% | 69.9% |
| 1ysrA00 | 3.30.565.10 | Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain | 0.52 | 40.0 | 3.49e-01 | 84.5% | 90.5% |
| 3h90A02 | 3.30.70.1350 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Cation efflux protein, cytoplasmic domain | 0.52 | 35.0 | 3.55e-01 | 71.4% | 97.6% |
| 6jqlA02 | 3.40.309.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 2 › Aldehyde Dehydrogenase; Chain A, domain 2 | 0.50 | 34.0 | 2.61e-01 | 70.2% | 90.1% |
ECOD (21)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5070921 | 327.7.1.1 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Cation efflux protein cytoplasmic domain-like › Cation efflux protein cytoplasmic domain-like › ZT_dimer | 0.56 | 38.0 | 3.79e-01 | 70.2% | 84.4% |
| 5065117 | 2003.1.5.24 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Met_10 | 0.56 | 46.0 | 3.33e-01 | 94.0% | 36.4% |
| 2545867 | 327.13.1.3 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Ring-building motif I in type III secretion system › Ring-building motif I in type III secretion system › PrgH | 0.56 | 41.0 | 3.93e-01 | 77.4% | 84.7% |
| 4952836 | 327.3.1.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › GMP synthetase C-terminal dimerisation domain › GMP synthetase C-terminal dimerisation domain | 0.55 | 38.0 | 3.75e-01 | 71.4% | 90.0% |
| 5072584 | 2003.1.5.24 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Met_10 | 0.55 | 46.0 | 3.21e-01 | 95.2% | 38.3% |
| 3756825 | 2003.1.5.53 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › tRNA_U5-meth_tr | 0.54 | 47.0 | 3.03e-01 | 100.0% | 50.2% |
| 3839169 | 2003.1.1.51 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › DFP | 0.54 | 46.0 | 3.43e-01 | 98.8% | 86.1% |
| 3590054 | 2003.1.5.74 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltrans_SAM | 0.53 | 46.0 | 3.15e-01 | 100.0% | 30.8% |
| 3471756 | 316.1.1.40 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › NTP_transf_7 | 0.52 | 38.0 | 3.00e-01 | 79.8% | 88.8% |
| 5026623 | 2003.1.5.24 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Met_10 | 0.52 | 44.0 | 3.13e-01 | 97.6% | 36.8% |
| 5058158 | 2003.1.5.24 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Met_10 | 0.51 | 40.0 | 2.89e-01 | 85.7% | 32.9% |
| 4990482 | 2003.1.5.24 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Met_10 | 0.51 | 43.0 | 3.09e-01 | 95.2% | 38.9% |
| 5047188 | 5104.1.1.1 ↗ | a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › DHHA1 | 0.51 | 43.0 | 3.74e-01 | 95.2% | 87.4% |
| 4272029 | 2003.1.5.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases | 0.51 | 42.0 | 2.95e-01 | 95.2% | 32.1% |
| 5001313 | 2003.1.5.24 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Met_10 | 0.51 | 43.0 | 3.07e-01 | 96.4% | 38.9% |
| 4933531 | 2003.1.5.24 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Met_10 | 0.51 | 42.0 | 3.04e-01 | 95.2% | 37.1% |
| 5050009 | 2003.1.5.24 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Met_10 | 0.51 | 42.0 | 3.03e-01 | 95.2% | 33.6% |
| 5000619 | 5104.1.1.1 ↗ | a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › DHHA1 | 0.50 | 41.0 | 3.75e-01 | 94.0% | 88.2% |
| 3181314 | 513.2.1.0 ↗ | a+b two layers › Obg GTP-binding protein C-terminal domain-like › Putative transferase PH0793 N-terminal domain › Putative transferase PH0793 N-terminal domain | 0.50 | 42.0 | 2.79e-01 | 94.0% | 27.8% |
| 4931836 | 2003.1.5.24 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Met_10 | 0.50 | 42.0 | 3.01e-01 | 96.4% | 37.5% |
| 3224367 | 2003.1.5.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases | 0.50 | 41.0 | 2.83e-01 | 94.0% | 28.8% |
D2
medium
residues 132-200_217-302_358-378
Domain cluster:
representative
CATH (4)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5n1tA03 | 3.90.760.10 | Alpha Beta › Alpha-Beta Complex › Flavocytochrome C Sulfide Dehydrogenase; Chain A Domain 3 › Flavocytochrome c sulphide dehydrogenase, flavin-binding domain | 0.57 | 20.0 | 2.99e-01 | 84.7% | 71.8% |
| 2ns9A01 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.52 | 33.0 | 3.53e-01 | 90.3% | 72.3% |
| 1iz6A01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.52 | 21.0 | 3.00e-01 | 74.4% | 84.1% |
| 1tr8A01 | 2.20.70.30 | Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › Nascent polypeptide-associated complex domain | 0.51 | 16.0 | 2.94e-01 | 77.8% | 96.2% |
ECOD (6)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3761138 | 319.1.1.1 ↗ | beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 | 0.66 | 23.0 | 2.89e-01 | 71.0% | 47.8% |
| 5017300 | 283.2.1.0 ↗ | a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › gpW/gp25-like › gpW/gp25-like | 0.56 | 28.0 | 3.34e-01 | 76.7% | 67.5% |
| 3906813 | 2004.1.1.26 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Kinesin | 0.52 | 36.0 | 2.93e-01 | 71.0% | 65.5% |
| 5023738 | 11.1.1.1443 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PF29994 | 0.51 | 28.0 | 3.39e-01 | 75.6% | 82.7% |
| 3867688 | 11.1.1.614 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_ZP2 | 0.50 | 29.0 | 3.28e-01 | 86.9% | 74.4% |
| 4323146 | 7504.1.1.1 ↗ | a/b three-layered sandwiches › ITPase-like › ITPase-like › ITPase-like › Ham1p_like | 0.50 | 34.0 | 3.32e-01 | 85.2% | 61.6% |
D3
medium
residues 201-216_303-357
Domain cluster:
representative
CATH (2)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2fggA01 | 3.30.160.240 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Rv1738 | 0.63 | 41.0 | 4.09e-01 | 71.8% | 64.0% |
| 2otmA00 | 3.30.1330.40 | Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › RutC-like | 0.57 | 40.0 | 3.12e-01 | 73.2% | 35.8% |
ECOD (4)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3823920 | 310.2.1.38 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF › Hobbit | 0.68 | 48.0 | 4.45e-01 | 74.6% | 98.9% |
| 3369452 | 310.2.1.38 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF › Hobbit | 0.67 | 48.0 | 4.43e-01 | 74.6% | 100.0% |
| 3926707 | 4156.1.1.3 ↗ | alpha arrays › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › DSHCT | 0.56 | 41.0 | 2.84e-01 | 77.5% | 70.9% |
| 5056176 | 2004.1.1.53 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Adenylsucc_synt | 0.50 | 36.0 | 2.31e-01 | 76.1% | 40.6% |