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LacPavin_0818_WC45_scaffold_65992_prodigal-single.1__X__X__00383

Bact-Vir

LacPavin_0818_WC45_scaffold_65992_prodigal-single.1__X__X__00383

Identity

Kingdom:
phage

Quality

91.9 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-166
PDB
CATH (8)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3d2lA02 2.20.25.110 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › S-adenosyl-L-methionine-dependent methyltransferases 0.68 26.0 4.18e-01 78.2% 92.1%
2w16A03 2.40.170.20 Mainly Beta › Beta Barrel › Maltoporin; Chain A › TonB-dependent receptor, beta-barrel domain 0.63 46.0 3.11e-01 73.3% 91.9%
3efmA02 2.40.170.20 Mainly Beta › Beta Barrel › Maltoporin; Chain A › TonB-dependent receptor, beta-barrel domain 0.63 46.0 3.28e-01 73.9% 94.7%
3njtA01 2.40.160.50 Mainly Beta › Beta Barrel › Porin › membrane protein fhac: a member of the omp85/tpsb transporter family 0.57 45.0 3.63e-01 98.2% 44.7%
6f1uK02 3.90.1150.210 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › F-actin capping protein, beta subunit 0.54 38.0 4.01e-01 95.8% 80.0%
1qj8A00 2.40.160.20 Mainly Beta › Beta Barrel › Porin › 0.53 40.0 4.22e-01 78.2% 98.0%
1af6A00 2.40.170.10 Mainly Beta › Beta Barrel › Maltoporin; Chain A › Porin, LamB type 0.52 49.0 3.54e-01 98.8% 46.3%
6wilA01 2.40.160.50 Mainly Beta › Beta Barrel › Porin › membrane protein fhac: a member of the omp85/tpsb transporter family 0.52 44.0 3.42e-01 90.3% 51.3%
ECOD (25)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3892200 71.2.1.4 beta meanders › Lipoprotein localization factors LolAB › PA1994-like › PA1994-like › CATIP_N 0.68 49.0 4.28e-01 73.3% 86.0%
3797033 319.1.1.0 beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones 0.65 39.0 4.11e-01 93.9% 64.5%
3685749 4051.1.1.2 a+b two layers › a+b domain in Capz › a+b domain in Capz › a+b domain in Capz › F-actin_cap_A 0.59 41.0 4.36e-01 96.4% 78.7%
3875809 4051.1.1.2 a+b two layers › a+b domain in Capz › a+b domain in Capz › a+b domain in Capz › F-actin_cap_A 0.58 40.0 4.07e-01 96.4% 69.7%
3788774 4051.1.1.2 a+b two layers › a+b domain in Capz › a+b domain in Capz › a+b domain in Capz › F-actin_cap_A 0.58 41.0 4.35e-01 95.8% 81.4%
3616310 4291.1.1.1 beta barrels › Oxysterol-binding protein › Oxysterol-binding protein › Oxysterol-binding protein › Oxysterol_BP 0.58 42.0 3.19e-01 75.2% 73.9%
3908432 4291.1.1.1 beta barrels › Oxysterol-binding protein › Oxysterol-binding protein › Oxysterol-binding protein › Oxysterol_BP 0.58 41.0 3.11e-01 73.3% 69.2%
4991389 10.1.1.117 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Thermopsin 0.57 43.0 3.68e-01 78.8% 93.4%
3871207 4291.1.1.1 beta barrels › Oxysterol-binding protein › Oxysterol-binding protein › Oxysterol-binding protein › Oxysterol_BP 0.57 41.0 3.08e-01 75.2% 77.8%
5055280 331.4.1.0 a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 0.56 38.0 4.10e-01 95.8% 77.9%
5035736 71.1.1.26 beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › DUF3108 0.56 42.0 4.17e-01 75.8% 81.8%
4992294 10.1.1.117 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Thermopsin 0.55 42.0 3.68e-01 78.2% 96.8%
4977538 9.13.1.0 beta barrels › Lipocalins/Streptavidin › AOC barrel-like › AOC barrel-like 0.55 31.0 3.58e-01 99.4% 76.5%
3272624 4210.1.1.1 a+b two layers › WGR domain › WGR domain › WGR domain › WGR 0.55 38.0 4.27e-01 72.1% 90.0%
3282130 3692.1.1.0 a+b two layers › Ornithine cyclodeaminase-like enzymes dimerization domain › Ornithine cyclodeaminase-like enzymes dimerization domain › Ornithine cyclodeaminase-like enzymes dimerization domain 0.54 35.0 3.83e-01 95.8% 77.0%
3388794 71.2.1.0 beta meanders › Lipoprotein localization factors LolAB › PA1994-like › PA1994-like 0.53 48.0 4.20e-01 95.8% 71.7%
3056279 4051.1.1.2 a+b two layers › a+b domain in Capz › a+b domain in Capz › a+b domain in Capz › F-actin_cap_A 0.53 38.0 3.82e-01 98.2% 72.4%
5080405 5084.1.1.0 beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like 0.53 39.0 3.96e-01 75.2% 100.0%
4025435 4051.1.1.2 a+b two layers › a+b domain in Capz › a+b domain in Capz › a+b domain in Capz › F-actin_cap_A 0.52 42.0 4.07e-01 95.8% 74.2%
3634501 331.3.1.17 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › VASt 0.52 36.0 3.45e-01 97.0% 59.5%
3299865 331.3.1.17 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › VASt 0.52 36.0 3.69e-01 96.4% 71.5%
3660463 331.3.1.17 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › VASt 0.52 36.0 3.59e-01 96.4% 66.9%
3281893 71.2.1.1 beta meanders › Lipoprotein localization factors LolAB › PA1994-like › PA1994-like › Glycolipid_bind 0.51 44.0 4.28e-01 93.9% 87.0%
4937593 71.1.1.0 beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB 0.51 37.0 3.44e-01 75.8% 90.4%
3976326 5084.3.1.2 beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter › IAT_beta 0.50 43.0 4.19e-01 90.9% 92.8%
D2 high residues 346-455
PDB
CATH (14)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4my0A02 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.62 47.0 4.36e-01 80.0% 69.3%
1zs7A01 3.10.450.120 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Pre-PUA domain; domain 1 0.61 46.0 4.70e-01 78.2% 100.0%
2qziA00 3.40.1720.10 Alpha Beta › 3-Layer(aba) Sandwich › Streptococcus thermophilus LMG 18311 protein like › Streptococcus thermophilus LMG 18311 protein like 0.60 41.0 4.26e-01 78.2% 76.2%
3uc2A00 2.60.40.3340 Mainly Beta › Sandwich › Immunoglobulin-like › Domain of unknown function DUF4426 0.59 50.0 4.89e-01 93.6% 98.4%
4qlaB00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.58 40.0 2.71e-01 70.0% 45.0%
2d44A01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.57 49.0 3.58e-01 96.4% 94.4%
4hbrA00 3.10.450.360 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.56 44.0 4.10e-01 83.6% 75.0%
3u1wA01 3.10.450.360 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.54 42.0 3.59e-01 82.7% 60.7%
6fopA01 2.70.98.30 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Golgi alpha-mannosidase II; domain 4 0.53 39.0 3.13e-01 77.3% 91.2%
3v0aB03 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.53 45.0 3.66e-01 92.7% 97.6%
2gfgA00 2.40.320.10 Mainly Beta › Beta Barrel › Hypothetical Protein Pfu-838710-001 › Hypothetical Protein Pfu-838710-001 0.51 38.0 3.20e-01 96.4% 45.5%
4yfbC01 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.51 37.0 2.77e-01 76.4% 99.0%
3pvnA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.51 43.0 3.57e-01 95.5% 98.5%
1hn0A03 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.50 40.0 3.03e-01 86.4% 91.1%
ECOD (28)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5032938 213.1.1.0 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) 0.70 49.0 4.81e-01 72.7% 76.7%
5059595 213.1.1.21 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › LPG_synthase_C 0.69 47.0 4.47e-01 70.0% 66.2%
3599562 292.2.1.0 a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain 0.65 39.0 4.40e-01 90.9% 76.5%
4296470 245.1.1.1 a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 › RNase_PH_C 0.60 34.0 3.96e-01 80.0% 77.5%
3979245 520.1.1.0 beta sandwiches › gp9 N-terminal domain-like › gp9 N-terminal domain-related › gp9 N-terminal domain-related 0.58 33.0 3.97e-01 70.0% 84.0%
3957852 245.1.1.0 a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 0.55 38.0 3.83e-01 71.8% 98.3%
5023993 210.1.1.5 a+b four layers › Ntn/PP2C › Ntn › Proteasome subunits › DUF2121 0.55 49.0 3.84e-01 94.5% 95.5%
4954308 210.1.1.5 a+b four layers › Ntn/PP2C › Ntn › Proteasome subunits › DUF2121 0.55 49.0 3.85e-01 94.5% 96.3%
4618101 245.1.1.1 a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 › RNase_PH_C 0.55 36.0 3.82e-01 89.1% 74.0%
1280992 3521.1.1.2 a+b three layers › Polymerase basic protein 2 cap-binding domain › Polymerase basic protein 2 cap-binding domain › Polymerase basic protein 2 cap-binding domain › PB2_cap-binding 0.54 43.0 3.76e-01 84.5% 57.1%
4648951 4099.1.1.26 a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › Kre28 0.54 39.0 4.03e-01 91.8% 83.0%
1296460 216.2.1.1 a+b two layers › UBC-like › Thermo-DBP-RP2 C-terminal domain › Thermo-DBP-RP2 C-terminal domain › Thermo-DBP 0.54 34.0 3.46e-01 83.6% 65.1%
5038450 3435.1.1.0 a+b two layers › Recombination-associated protein rdgC › Recombination-associated protein rdgC › Recombination-associated protein rdgC 0.53 45.0 3.41e-01 91.8% 43.7%
4635523 331.3.1.20 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › KshA_C 0.53 47.0 3.66e-01 100.0% 67.5%
3877146 10.1.1.0 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.53 46.0 3.75e-01 93.6% 90.5%
4672450 210.1.1.5 a+b four layers › Ntn/PP2C › Ntn › Proteasome subunits › DUF2121 0.53 47.0 3.76e-01 94.5% 98.0%
4307752 10.1.1.0 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.53 45.0 3.66e-01 93.6% 87.1%
4051753 245.1.1.1 a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 › RNase_PH_C 0.53 34.0 3.75e-01 90.0% 80.0%
3771517 10.1.1.0 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.52 43.0 3.46e-01 90.0% 95.5%
5017610 210.1.1.5 a+b four layers › Ntn/PP2C › Ntn › Proteasome subunits › DUF2121 0.52 46.0 3.72e-01 95.5% 98.5%
3537643 10.1.1.5 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Pentaxin 0.52 45.0 3.68e-01 96.4% 98.6%
4233224 245.1.1.1 a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 › RNase_PH_C 0.52 34.0 3.66e-01 89.1% 80.0%
4115186 245.1.1.1 a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 › RNase_PH_C 0.51 33.0 3.64e-01 90.0% 80.0%
4488006 2003.1.5.13 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Spermine_synth 0.51 42.0 3.11e-01 90.0% 46.8%
4947399 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.51 39.0 4.15e-01 94.5% 95.8%
4023269 4099.1.1.0 a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like 0.51 39.0 3.94e-01 80.0% 87.3%
3722300 511.1.1.2 beta sandwiches › Heat shock protein 70kD (HSP70), peptide-binding domain › Heat shock protein 70kD (HSP70), peptide-binding domain › Heat shock protein 70kD (HSP70), peptide-binding domain › PF27034 0.51 38.0 3.12e-01 77.3% 92.4%
3835360 220.1.1.183 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_RDR2 0.50 43.0 3.95e-01 96.4% 88.0%
D3 medium residues 167-258
PDB
Domain cluster: representative
D4 medium residues 259-341
PDB
Domain cluster: representative
CATH (10)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3ripA02 1.20.120.1900 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Gamma-tubulin complex, C-terminal domain 0.61 47.0 3.36e-01 86.7% 90.7%
3ctwB00 1.10.8.930 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Protein of unknown function DUF1465 0.59 48.0 4.28e-01 89.2% 81.7%
3buxB01 1.20.930.20 Mainly Alpha › Up-down Bundle › Transcription Elongation Factor S-II; Chain A › Adaptor protein Cbl, N-terminal domain 0.59 47.0 4.13e-01 88.0% 91.5%
2oznB01 1.20.1270.90 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › AF1782-like 0.56 39.0 3.96e-01 72.3% 96.2%
1u02A01 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.53 42.0 3.49e-01 88.0% 98.7%
3n5fA01 3.40.630.10 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases 0.52 46.0 3.20e-01 100.0% 86.3%
6f7hA00 1.20.1080.10 Mainly Alpha › Up-down Bundle › Glycerol uptake facilitator protein › Glycerol uptake facilitator protein. 0.52 41.0 2.87e-01 98.8% 27.9%
2dj0A01 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.51 41.0 3.65e-01 90.4% 100.0%
1fhvA02 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.50 38.0 3.31e-01 79.5% 71.0%
2mhkA01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.50 40.0 3.45e-01 84.3% 80.8%
ECOD (15)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3845840 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.64 53.0 5.33e-01 98.8% 89.4%
3589151 829.1.1.2 a+b duplicates or obligate multimers › NinB › NinB › NinB › HNHc_6 0.62 43.0 3.78e-01 72.3% 60.8%
4243491 632.24.1.4 alpha bundles › immunoglobulin/albumin-binding domain-like › GBS CAMP factor C-terminal domain › GBS CAMP factor C-terminal domain › FIVAR 0.61 42.0 4.45e-01 72.3% 98.7%
4976513 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.60 45.0 4.75e-01 80.7% 90.7%
3309440 216.1.1.0 a+b two layers › UBC-like › UBC-like › UBC-like 0.59 40.0 3.33e-01 71.1% 95.3%
3218728 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.57 44.0 4.40e-01 81.9% 80.0%
4014858 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.57 44.0 4.07e-01 84.3% 75.5%
3173999 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.56 43.0 4.06e-01 81.9% 82.0%
3395488 148.1.3.113 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_TRIP13_C 0.55 45.0 4.30e-01 95.2% 94.3%
3598193 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.55 49.0 4.52e-01 97.6% 93.3%
4681348 103.2.1.2 alpha arrays › RuvA-C › ATP cone › ATP cone › ATP-cone 0.55 40.0 3.79e-01 77.1% 75.0%
3587655 829.1.1.0 a+b duplicates or obligate multimers › NinB › NinB › NinB 0.53 37.0 3.89e-01 73.5% 92.0%
4946861 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.53 36.0 2.49e-01 71.1% 44.1%
3610493 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.52 43.0 4.43e-01 92.8% 98.8%
4940788 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.50 37.0 3.67e-01 80.7% 83.3%