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LacPavin_0818_WC45_scaffold_65992_prodigal-single.1__X__X__00412
Bact-VirLacPavin_0818_WC45_scaffold_65992_prodigal-single.1__X__X__00412
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-62
Domain cluster:
rep: NC_070967.1__YP_010671331.1__PQC17_gp182__00182__D3-58
CATH (30)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1pg2A01 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.71 | 52.0 | 3.25e-01 | 80.0% | 36.8% |
| 1tfkA00 | 3.10.450.200 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.64 | 48.0 | 4.27e-01 | 86.7% | 81.9% |
| 3le4A00 | 2.20.70.10 | Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › | 0.60 | 34.0 | 3.60e-01 | 96.7% | 60.0% |
| 2i2lA01 | 2.10.70.50 | Mainly Beta › Ribbon › Complement Module; domain 1 › | 0.60 | 39.0 | 4.14e-01 | 96.7% | 76.9% |
| 6serA01 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.58 | 42.0 | 2.86e-01 | 76.7% | 71.1% |
| 3uoxB01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.58 | 47.0 | 3.05e-01 | 91.7% | 53.9% |
| 3gvpA02 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.58 | 42.0 | 3.16e-01 | 80.0% | 74.8% |
| 7bqiA01 | 1.20.58.900 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › RUN domain | 0.57 | 43.0 | 3.20e-01 | 80.0% | 48.3% |
| 2k49A00 | 2.30.29.80 | Mainly Beta › Roll › PH-domain like › | 0.57 | 50.0 | 4.01e-01 | 98.3% | 63.6% |
| 2pw4A00 | 1.10.3300.10 | Mainly Alpha › Orthogonal Bundle › Jann2411-like fold › Jann2411-like domain | 0.57 | 43.0 | 3.15e-01 | 85.0% | 84.7% |
| 2e12A00 | 2.30.30.720 | Mainly Beta › Roll › SH3 type barrels. › Protein of unknown function (DUF3247) | 0.56 | 43.0 | 3.72e-01 | 81.7% | 84.9% |
| 2hdiA01 | 2.170.130.10 | Mainly Beta › Beta Complex › Ferric Hydroxamate Uptake Protein; Chain A, domain 1 › TonB-dependent receptor, plug domain | 0.56 | 35.0 | 2.83e-01 | 98.3% | 29.9% |
| 2hnkA00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.56 | 41.0 | 2.75e-01 | 78.3% | 21.4% |
| 3hdoA01 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.56 | 40.0 | 3.21e-01 | 78.3% | 76.9% |
| 8be0A01 | 3.40.91.90 | Alpha Beta › 3-Layer(aba) Sandwich › Restriction Endonuclease › Influenza RNA-dependent RNA polymerase subunit PA, endonuclease domain | 0.55 | 38.0 | 2.66e-01 | 86.7% | 22.5% |
| 6ukcA00 | 1.10.530.10 | Mainly Alpha › Orthogonal Bundle › Lysozyme › | 0.55 | 47.0 | 3.72e-01 | 100.0% | 66.9% |
| 2yfqB03 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.55 | 38.0 | 2.96e-01 | 75.0% | 99.3% |
| 1qlmA01 | 3.10.340.11 | Alpha Beta › Roll › Methenyltetrahydromethanopterin Cyclohydrolase; Chain A, domain 1 › Methenyltetrahydromethanopterin Cyclohydrolase; Chain A, domain 1 | 0.54 | 37.0 | 3.15e-01 | 75.0% | 97.5% |
| 3r4qA01 | 3.10.180.10 | Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 | 0.54 | 38.0 | 3.08e-01 | 76.7% | 83.3% |
| 2pmzK00 | 3.90.940.10 | Alpha Beta › Alpha-Beta Complex › Eukaryotic RPB6 RNA polymerase subunit › RNA polymerase subunit, RPB6/omega | 0.54 | 36.0 | 3.28e-01 | 78.3% | 51.2% |
| 4c3iG02 | 2.40.50.1060 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.53 | 38.0 | 3.07e-01 | 100.0% | 34.5% |
| 3rm5B01 | 3.40.1190.20 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase | 0.53 | 41.0 | 2.69e-01 | 91.7% | 18.0% |
| 3pieA02 | 3.30.1370.250 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › | 0.53 | 36.0 | 3.03e-01 | 71.7% | 95.0% |
| 1h2iA01 | 3.30.390.80 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › DNA repair protein Rad52/59/22 | 0.52 | 37.0 | 2.94e-01 | 80.0% | 72.3% |
| 3vkgA07 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.51 | 44.0 | 2.70e-01 | 96.7% | 47.0% |
| 1pwaA00 | 2.80.10.50 | Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › | 0.51 | 41.0 | 3.46e-01 | 98.3% | 84.6% |
| 1kb0A01 | 2.140.10.10 | Mainly Beta › 8 Propeller › Methanol Dehydrogenase; Chain A › Quinoprotein alcohol dehydrogenase-like superfamily | 0.51 | 35.0 | 2.06e-01 | 73.3% | 92.0% |
| 2fdbN00 | 2.80.10.50 | Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › | 0.51 | 43.0 | 3.33e-01 | 100.0% | 72.3% |
| 2js3A01 | 1.10.287.780 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ITPase-like domains | 0.51 | 36.0 | 3.40e-01 | 78.3% | 85.5% |
| 1fjrA02 | 2.170.180.11 | Mainly Beta › Beta Complex › Methuselah ectodomain, domain 2 › Methuselah ectodomain, domain 2 | 0.50 | 41.0 | 3.37e-01 | 96.7% | 95.2% |
ECOD (30)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3192627 | 633.1.1.1 ↗ | alpha bundles › Bromodomain-like › Bromodomain › Bromodomain › Bromodomain | 0.67 | 52.0 | 3.65e-01 | 85.0% | 52.3% |
| 3484397 | 64.1.1.1 ↗ | beta meanders › WW domain-like › WW domain › WW domain › WW | 0.59 | 34.0 | 4.01e-01 | 98.3% | 91.4% |
| 3410783 | 64.1.1.1 ↗ | beta meanders › WW domain-like › WW domain › WW domain › WW | 0.59 | 30.0 | 3.40e-01 | 100.0% | 64.4% |
| 3451552 | 375.1.4.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Aspartate carbamoyltransferase, Regulatory-chain, C-terminal domain | 0.58 | 42.0 | 4.43e-01 | 100.0% | 83.3% |
| 3552188 | 2.21.1.0 ↗ | beta barrels › OB-fold › Small protein B (SmpB) › Small protein B (SmpB) | 0.58 | 44.0 | 3.20e-01 | 88.3% | 29.2% |
| 3167160 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.58 | 48.0 | 2.81e-01 | 93.3% | 26.7% |
| 3479988 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.58 | 45.0 | 3.22e-01 | 86.7% | 52.1% |
| 3392481 | 109.4.1.1434 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TRAPPC9-Trs120, PF26251 | 0.58 | 41.0 | 2.44e-01 | 76.7% | 9.8% |
| 3708672 | 101.1.9.0 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain | 0.57 | 49.0 | 4.42e-01 | 98.3% | 82.4% |
| 3506428 | 220.1.1.168 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › Tmpp129 | 0.57 | 47.0 | 3.80e-01 | 100.0% | 55.6% |
| 3584345 | 375.1.1.26 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Rpr2 | 0.57 | 38.0 | 3.05e-01 | 71.7% | 38.5% |
| 4933315 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.56 | 41.0 | 3.75e-01 | 80.0% | 58.7% |
| 4942265 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.55 | 37.0 | 3.42e-01 | 71.7% | 85.9% |
| 5024071 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.54 | 37.0 | 3.10e-01 | 73.3% | 72.2% |
| 3590896 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.54 | 42.0 | 2.63e-01 | 85.0% | 24.6% |
| 4305708 | 2003.1.15.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Glycosyltransferase Maf N-terminal domain | 0.54 | 43.0 | 3.12e-01 | 95.0% | 67.3% |
| 3610398 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.54 | 39.0 | 3.74e-01 | 81.7% | 76.0% |
| 5028329 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.53 | 39.0 | 3.62e-01 | 78.3% | 74.7% |
| 5039496 | 101.1.2.914 ↗ | alpha arrays › HTH › HTH › winged helix domain › DUF6015 | 0.53 | 41.0 | 3.66e-01 | 95.0% | 57.8% |
| 3412273 | 64.1.1.0 ↗ | beta meanders › WW domain-like › WW domain › WW domain | 0.53 | 32.0 | 3.59e-01 | 96.7% | 97.1% |
| 3596701 | 192.4.1.0 ↗ | alpha bundles › Long alpha-hairpin › Ribosomal protein L29 (L29p) › Ribosomal protein L29 (L29p) | 0.53 | 42.0 | 3.96e-01 | 96.7% | 88.7% |
| 3507504 | 64.1.1.0 ↗ | beta meanders › WW domain-like › WW domain › WW domain | 0.52 | 32.0 | 3.56e-01 | 100.0% | 82.2% |
| 3802266 | 605.1.1.85 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › XH | 0.52 | 35.0 | 2.72e-01 | 70.0% | 35.9% |
| 3734500 | 261.1.1.0 ↗ | a+b complex topology › Hect, E3 ligase catalytic domain › Hect, E3 ligase catalytic domain › Hect, E3 ligase catalytic domain | 0.52 | 41.0 | 2.45e-01 | 90.0% | 19.5% |
| 3594415 | 4015.1.1.0 ↗ | alpha complex topology › alpha-helical domain in sec1/munc18-like (SM) proteins › alpha-helical domain in sec1/munc18-like (SM) proteins › alpha-helical domain in sec1/munc18-like (SM) proteins | 0.52 | 40.0 | 2.73e-01 | 83.3% | 29.0% |
| 3413714 | 4.1.1.7 ↗ | beta barrels › SH3 › SH3 › SH3 › KOW,ribosomal_L24 | 0.51 | 45.0 | 3.05e-01 | 96.7% | 46.8% |
| 4280817 | 2003.1.10.9 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › PreATP-grasp domain › Lant_dehydr_N | 0.51 | 40.0 | 3.43e-01 | 88.3% | 67.0% |
| 4491893 | 4.1.1.7 ↗ | beta barrels › SH3 › SH3 › SH3 › KOW,ribosomal_L24 | 0.51 | 44.0 | 3.65e-01 | 95.0% | 99.0% |
| 3576110 | 64.1.1.1 ↗ | beta meanders › WW domain-like › WW domain › WW domain › WW | 0.50 | 31.0 | 2.70e-01 | 100.0% | 36.8% |
| 3563758 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.50 | 33.0 | 2.80e-01 | 78.3% | 39.0% |