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LacPavin_0818_WC50_scaffold_3810_prodigal-single.1__X__X__00021
Bact-VirLacPavin_0818_WC50_scaffold_3810_prodigal-single.1__X__X__00021
Identity
- Kingdom:
- phage
Quality
84.4
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-140
Domain cluster:
rep: NC_047735.1__YP_009783505.1__QLX27_gp132__00132__D3-100
CATH (6)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2qi2A01 | 2.30.30.870 | Mainly Beta › Roll › SH3 type barrels. › Pelota, domain A | 0.66 | 47.0 | 5.24e-01 | 98.6% | 96.2% |
| 2e12A00 | 2.30.30.720 | Mainly Beta › Roll › SH3 type barrels. › Protein of unknown function (DUF3247) | 0.66 | 41.0 | 4.84e-01 | 76.1% | 90.3% |
| 4h75A00 | 2.80.10.70 | Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › Spindlin/Ssty | 0.63 | 35.0 | 3.09e-01 | 72.5% | 37.2% |
| 4iupA02 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.60 | 33.0 | 4.28e-01 | 92.0% | 100.0% |
| 2kxcA00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.52 | 26.0 | 3.53e-01 | 82.6% | 98.5% |
| 4mi7A00 | 3.90.70.170 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › | 0.50 | 38.0 | 3.95e-01 | 89.9% | 87.9% |
ECOD (14)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5080336 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.84 | 39.0 | 5.78e-01 | 89.1% | 98.4% |
| 4432457 | 4.1.1.97 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF150_C | 0.81 | 40.0 | 5.68e-01 | 84.1% | 97.1% |
| 5077969 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.76 | 43.0 | 5.58e-01 | 75.4% | 97.5% |
| 3519122 | 4.31.1.1 ↗ | beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL | 0.75 | 44.0 | 5.35e-01 | 72.5% | 88.9% |
| 3999725 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.63 | 31.0 | 3.91e-01 | 83.3% | 76.5% |
| 4954224 | 4.1.1.182 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF2097 | 0.63 | 40.0 | 4.72e-01 | 87.0% | 93.7% |
| 4012002 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.59 | 31.0 | 4.18e-01 | 89.1% | 100.0% |
| 3609256 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.58 | 36.0 | 4.32e-01 | 78.3% | 98.8% |
| 4013811 | 4.8.1.22 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like › DUF7025 | 0.55 | 34.0 | 4.07e-01 | 89.1% | 94.4% |
| 3339169 | 4.1.1.415 ↗ | beta barrels › SH3 › SH3 › SH3 › PNPOx_N | 0.54 | 33.0 | 4.07e-01 | 87.7% | 98.8% |
| 4952318 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.54 | 28.0 | 3.68e-01 | 82.6% | 100.0% |
| 3205559 | 4.8.1.22 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like › DUF7025 | 0.53 | 36.0 | 3.57e-01 | 88.4% | 64.8% |
| 4952724 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.53 | 29.0 | 3.03e-01 | 84.1% | 55.2% |
| 1144780 | 219.1.1.69 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › GtgE | 0.50 | 38.0 | 3.95e-01 | 89.9% | 87.9% |