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LacPavin_0818_WC50_scaffold_3810_prodigal-single.1__X__X__00084
Bact-VirLacPavin_0818_WC50_scaffold_3810_prodigal-single.1__X__X__00084
Identity
- Kingdom:
- phage
Quality
92.7
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-42
Domain cluster:
representative
CATH (45)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 7ejoB01 | 3.30.2260.10 | Alpha Beta › 2-Layer Sandwich › ERH-like fold › Enhancer of rudimentary | 0.78 | 68.0 | 5.40e-01 | 100.0% | 72.3% |
| 6b9tF01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.77 | 58.0 | 4.16e-01 | 100.0% | 28.0% |
| 3laaA00 | 2.150.10.10 | Mainly Beta › 2 Solenoid › Alkaline Protease, subunit P, domain 1 › Serralysin-like metalloprotease, C-terminal | 0.72 | 49.0 | 3.27e-01 | 92.7% | 17.8% |
| 4kyzA00 | 3.30.70.600 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 | 0.70 | 58.0 | 3.95e-01 | 100.0% | 30.5% |
| 2jvfA00 | 3.30.1710.10 | Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein | 0.69 | 52.0 | 4.05e-01 | 85.4% | 80.9% |
| 4gi3C00 | 3.30.60.30 | Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › | 0.69 | 51.0 | 4.70e-01 | 100.0% | 61.4% |
| 1t3yA00 | 3.40.20.10 | Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin | 0.69 | 52.0 | 3.82e-01 | 100.0% | 29.0% |
| 2hhzA00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.68 | 58.0 | 4.07e-01 | 100.0% | 37.0% |
| 4llgM00 | 3.10.20.510 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › RNA polymerase inhibitor | 0.68 | 56.0 | 5.35e-01 | 100.0% | 88.0% |
| 4iajA00 | 3.30.1490.390 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Protein of unknown function DUF4649 | 0.68 | 57.0 | 4.78e-01 | 100.0% | 59.2% |
| 3h20A01 | 3.30.1490.240 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › RepB DNA-primase, N-terminal domain | 0.68 | 56.0 | 4.91e-01 | 100.0% | 66.7% |
| 2n17A00 | 3.30.60.30 | Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › | 0.67 | 50.0 | 4.67e-01 | 100.0% | 62.5% |
| 1i7dA03 | 2.70.20.10 | Mainly Beta › Distorted Sandwich › Topoisomerase I; domain 3 › Topoisomerase I, domain 3 | 0.67 | 55.0 | 3.94e-01 | 100.0% | 93.6% |
| 2vfrA02 | 3.30.465.10 | Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › | 0.65 | 55.0 | 3.91e-01 | 100.0% | 30.8% |
| 1qysA00 | 3.30.1710.10 | Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein | 0.64 | 51.0 | 4.01e-01 | 92.7% | 85.9% |
| 7c2fB01 | 3.40.20.10 | Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin | 0.64 | 45.0 | 3.69e-01 | 100.0% | 37.2% |
| 1ltlA03 | 2.20.28.10 | Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › | 0.63 | 53.0 | 5.09e-01 | 100.0% | 95.9% |
| 3in6A02 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.62 | 52.0 | 3.84e-01 | 100.0% | 44.4% |
| 6eo5B01 | 3.30.465.10 | Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › | 0.62 | 54.0 | 3.34e-01 | 100.0% | 17.6% |
| 2jz6A01 | 2.30.170.40 | Mainly Beta › Roll › Ribosomal Protein L24e; Chain: T; › Ribosomal protein L28/L24 | 0.62 | 45.0 | 4.35e-01 | 97.6% | 68.0% |
| 2kgfA00 | 1.10.375.10 | Mainly Alpha › Orthogonal Bundle › Human Immunodeficiency Virus Type 1 Capsid Protein › Human Immunodeficiency Virus Type 1 Capsid Protein | 0.62 | 46.0 | 3.33e-01 | 87.8% | 67.1% |
| 2jkgA00 | 3.30.450.30 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic | 0.61 | 42.0 | 2.97e-01 | 78.0% | 22.4% |
| 3loiA01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.61 | 53.0 | 3.58e-01 | 100.0% | 26.2% |
| 1e0yA02 | 3.30.465.10 | Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › | 0.61 | 52.0 | 3.86e-01 | 100.0% | 45.9% |
| 2c60A01 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.60 | 48.0 | 4.02e-01 | 95.1% | 91.1% |
| 1zr6A02 | 3.30.465.10 | Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › | 0.60 | 50.0 | 3.55e-01 | 100.0% | 29.8% |
| 3weeA01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.59 | 43.0 | 2.91e-01 | 80.5% | 99.5% |
| 4m0wA03 | 2.60.120.1680 | Mainly Beta › Sandwich › Jelly Rolls › | 0.59 | 49.0 | 3.49e-01 | 100.0% | 40.1% |
| 4bwsF00 | 3.30.1490.40 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › GYF domain | 0.58 | 45.0 | 4.02e-01 | 100.0% | 58.2% |
| 2yvsA01 | 3.30.465.10 | Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › | 0.58 | 48.0 | 3.61e-01 | 100.0% | 41.2% |
| 4ekuA01 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.58 | 44.0 | 3.41e-01 | 97.6% | 55.6% |
| 2l6oA01 | 2.40.10.320 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Uncharacterised protein PF13642 yp_926445, N-terminal domain | 0.58 | 45.0 | 3.92e-01 | 100.0% | 54.2% |
| 1yj7B01 | 3.30.70.1530 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Hypothetical protein rpa1041 | 0.58 | 43.0 | 3.70e-01 | 87.8% | 49.3% |
| 2pq0A02 | 3.30.1240.10 | Alpha Beta › 2-Layer Sandwich › Hypothetical Protein, Haloacid Dehalogenase-like Hydrolase; Chain: A; domain 2 › | 0.58 | 42.0 | 3.37e-01 | 87.8% | 92.0% |
| 1wkyA02 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.57 | 46.0 | 3.29e-01 | 97.6% | 56.9% |
| 3szpB02 | 3.40.190.290 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › | 0.57 | 44.0 | 2.93e-01 | 92.7% | 33.7% |
| 4r3dA03 | 2.60.120.1680 | Mainly Beta › Sandwich › Jelly Rolls › | 0.57 | 49.0 | 3.42e-01 | 100.0% | 40.1% |
| 3h8hA00 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.57 | 42.0 | 3.53e-01 | 95.1% | 66.3% |
| 3sjnA01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.56 | 45.0 | 3.39e-01 | 100.0% | 89.9% |
| 1iyjB03 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.55 | 42.0 | 3.00e-01 | 90.2% | 56.3% |
| 1wu2A04 | 2.40.340.10 | Mainly Beta › Beta Barrel › Beta-clip › MoeA, C-terminal, domain IV | 0.54 | 37.0 | 3.27e-01 | 92.7% | 42.9% |
| 2j9uB00 | 2.30.30.380 | Mainly Beta › Roll › SH3 type barrels. › Zn-finger domain of Sec23/24 | 0.53 | 41.0 | 4.05e-01 | 97.6% | 100.0% |
| 4pofA03 | 2.20.28.10 | Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › | 0.52 | 39.0 | 3.87e-01 | 100.0% | 96.0% |
| 4lmyA02 | 3.30.1490.190 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Ferric-uptake regulator, C-terminal dimerisarion domain | 0.52 | 37.0 | 3.45e-01 | 78.0% | 83.3% |
| 3zq5A03 | 3.30.450.270 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PHY domain | 0.51 | 36.0 | 2.61e-01 | 85.4% | 23.5% |
ECOD (41)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3218303 | 379.1.1.3 ↗ | few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors › Kazal_2 | 0.76 | 56.0 | 5.45e-01 | 100.0% | 73.3% |
| 4448678 | 4.1.1.307 ↗ | beta barrels › SH3 › SH3 › SH3 › PF26132 | 0.74 | 64.0 | 5.27e-01 | 100.0% | 94.7% |
| 5030322 | 304.4.1.0 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel | 0.73 | 57.0 | 4.89e-01 | 90.2% | 98.6% |
| 3959955 | 304.163.1.3 ↗ | a+b two layers › Alpha-beta plaits › ATP-binding protein TM_1403 insertion domain › ATP-binding protein TM_1403 insertion domain › PF31118 | 0.73 | 65.0 | 6.32e-01 | 100.0% | 93.3% |
| 4397568 | 821.1.1.1 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG | 0.73 | 63.0 | 4.88e-01 | 100.0% | 54.4% |
| 4158495 | 821.1.1.1 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG | 0.71 | 61.0 | 4.76e-01 | 100.0% | 54.4% |
| 3590261 | 822.3.1.1 ↗ | a+b two layers › GYF/BRK domain-like › conserved domain protein SP_1775 › conserved domain protein SP_1775 › DUF4649 | 0.71 | 58.0 | 5.08e-01 | 100.0% | 67.6% |
| 4004704 | 3115.6.1.2 ↗ | a+b two layers › GP2-like › Bacterial RNA polymerase subunit epsilon › Bacterial RNA polymerase subunit epsilon › PF28597 | 0.70 | 58.0 | 5.73e-01 | 100.0% | 91.1% |
| 5065792 | 301.1.1.2 ↗ | a+b three layers › Bacillus chorismate mutase-like › L30e-like › L30e-like › eRF1_3 | 0.70 | 59.0 | 4.02e-01 | 100.0% | 31.0% |
| 5027350 | 301.1.1.2 ↗ | a+b three layers › Bacillus chorismate mutase-like › L30e-like › L30e-like › eRF1_3 | 0.70 | 59.0 | 4.14e-01 | 100.0% | 34.1% |
| 3969006 | 3115.6.1.2 ↗ | a+b two layers › GP2-like › Bacterial RNA polymerase subunit epsilon › Bacterial RNA polymerase subunit epsilon › PF28597 | 0.69 | 57.0 | 5.64e-01 | 100.0% | 91.1% |
| 4461643 | 379.1.1.3 ↗ | few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors › Kazal_2 | 0.69 | 56.0 | 5.00e-01 | 100.0% | 63.3% |
| 4958689 | 821.1.1.14 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › DUF2797 | 0.69 | 54.0 | 4.96e-01 | 100.0% | 65.0% |
| 3704667 | 4121.1.1.0 ↗ | a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like | 0.69 | 57.0 | 3.42e-01 | 100.0% | 17.3% |
| 4928795 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.69 | 57.0 | 5.58e-01 | 95.1% | 97.8% |
| 4994972 | 304.4.1.1 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › AsnC_trans_reg | 0.69 | 56.0 | 4.78e-01 | 95.1% | 100.0% |
| 5046850 | 821.1.1.1 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG | 0.68 | 58.0 | 4.57e-01 | 100.0% | 56.7% |
| 4982792 | 2.1.1.80 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › MCM_OB | 0.68 | 58.0 | 3.92e-01 | 100.0% | 31.9% |
| 4463006 | 3115.2.1.0 ↗ | a+b two layers › GP2-like › GP2 › GP2 | 0.68 | 56.0 | 5.50e-01 | 97.6% | 93.3% |
| 224066 | 822.3.1.1 ↗ | a+b two layers › GYF/BRK domain-like › conserved domain protein SP_1775 › conserved domain protein SP_1775 › DUF4649 | 0.67 | 56.0 | 4.70e-01 | 100.0% | 58.4% |
| 5016960 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.66 | 55.0 | 5.40e-01 | 97.6% | 100.0% |
| 3022172 | 375.12.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Nicotinate phosphoribosyltransferase C-terminal domain-related › Nicotinate phosphoribosyltransferase C-terminal domain-related | 0.65 | 45.0 | 4.02e-01 | 95.1% | 49.2% |
| 4990489 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.63 | 54.0 | 5.12e-01 | 100.0% | 98.0% |
| 5052383 | 2002.1.1.113 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › CdhD | 0.63 | 49.0 | 3.21e-01 | 90.2% | 21.5% |
| 5054307 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.63 | 53.0 | 5.20e-01 | 100.0% | 97.8% |
| 3826017 | 304.7.1.11 ↗ | a+b two layers › Alpha-beta plaits › Protease propeptides/inhibitors › Protease propeptides/inhibitors › MORF_dom | 0.61 | 41.0 | 3.43e-01 | 75.6% | 37.3% |
| 3721580 | 4121.1.1.0 ↗ | a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like | 0.61 | 48.0 | 2.99e-01 | 100.0% | 14.4% |
| 169012 | 223.2.1.1 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › Profilin | 0.60 | 43.0 | 3.01e-01 | 85.4% | 23.5% |
| 5041529 | 284.1.1.0 ↗ | a+b two layers › FKBP-like › FKBP-like › FKBP-like | 0.58 | 47.0 | 3.57e-01 | 100.0% | 85.0% |
| 4072763 | 223.2.1.33 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › Fuz_longin_3 | 0.58 | 39.0 | 2.94e-01 | 75.6% | 25.4% |
| 4028716 | 252.2.1.0 ↗ | a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like | 0.58 | 47.0 | 3.34e-01 | 95.1% | 60.0% |
| 3721350 | 312.1.1.11 ↗ | a+b three layers › HIT-like › HIT-related › HIT-related › Ap4A_phos_N | 0.57 | 43.0 | 2.90e-01 | 85.4% | 80.6% |
| 5007991 | 223.1.1.23 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › GAF_2 | 0.57 | 42.0 | 3.07e-01 | 85.4% | 28.5% |
| 3700429 | 223.2.1.6 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › uDENN | 0.57 | 39.0 | 2.84e-01 | 78.0% | 22.1% |
| 3925553 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.56 | 44.0 | 3.34e-01 | 100.0% | 62.3% |
| 4662939 | 1077.1.1.1 ↗ | few secondary structure elements › RelA zinc-finger domain › RelA zinc-finger domain › RelA zinc-finger domain › RelA_RIS | 0.56 | 42.0 | 3.68e-01 | 97.6% | 52.9% |
| 3719445 | 2003.1.1.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains | 0.55 | 42.0 | 2.79e-01 | 100.0% | 38.7% |
| 4566976 | 375.14.2.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-like domain in leucyl-tRNA synthetase (LS1) › Rubredoxin-like domain in leucyl-tRNA synthetase (LS2) | 0.54 | 40.0 | 4.06e-01 | 100.0% | 95.0% |
| 5050527 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.52 | 41.0 | 4.07e-01 | 92.7% | 97.8% |
| 3738951 | 11.1.1.642 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig-like_Pom152_1 | 0.52 | 40.0 | 3.15e-01 | 97.6% | 80.0% |
| 3816922 | 4081.1.1.0 ↗ | beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related | 0.51 | 40.0 | 2.54e-01 | 100.0% | 22.9% |