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LacPavin_0818_WC50_scaffold_3810_prodigal-single.1__X__X__00099
Bact-VirLacPavin_0818_WC50_scaffold_3810_prodigal-single.1__X__X__00099
Identity
- Kingdom:
- phage
Quality
90.9
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 4-45
Domain cluster:
representative
CATH (6)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1fouA01 | 1.10.246.30 | Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › | 0.76 | 64.0 | 5.43e-01 | 100.0% | 56.8% |
| 3vm9A02 | 6.10.140.2110 | Special › Helix non-globular › Helix Hairpins › | 0.68 | 57.0 | 5.27e-01 | 100.0% | 78.9% |
| 2hyjA01 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.65 | 53.0 | 5.25e-01 | 95.2% | 97.8% |
| 4lsbA02 | 6.10.250.2750 | Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.63 | 47.0 | 4.59e-01 | 95.2% | 76.6% |
| 1t07A00 | 1.10.3880.10 | Mainly Alpha › Orthogonal Bundle › YggX-like › Fe(II) trafficking protein YggX | 0.62 | 52.0 | 4.21e-01 | 95.2% | 85.2% |
| 2lqlA02 | 1.10.287.2900 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.59 | 44.0 | 4.40e-01 | 95.2% | 84.1% |
ECOD (4)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4089827 | 192.1.1.34 ↗ | alpha bundles › Long alpha-hairpin › GreA transcript cleavage protein, N-terminal domain › GreA transcript cleavage protein, N-terminal domain › DUF444 | 0.76 | 64.0 | 5.39e-01 | 100.0% | 61.3% |
| 3968144 | 605.1.1.1 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA | 0.75 | 64.0 | 5.62e-01 | 100.0% | 70.8% |
| 3806609 | 540.1.1.1 ↗ | few secondary structure elements › Cytochrome c oxidase subunit h › Cytochrome c oxidase subunit h › Cytochrome c oxidase subunit h › COX6B | 0.71 | 55.0 | 4.72e-01 | 92.9% | 52.0% |
| 3877354 | 3291.1.1.14 ↗ | alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › LAP2alpha | 0.67 | 54.0 | 3.66e-01 | 100.0% | 21.5% |