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LacPavin_0818_WC50_scaffold_3810_prodigal-single.1__X__X__00101
Bact-VirLacPavin_0818_WC50_scaffold_3810_prodigal-single.1__X__X__00101
Identity
- Kingdom:
- phage
Quality
85.3
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 7-81
Domain cluster:
representative
CATH (14)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2yztA00 | 3.30.160.250 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.68 | 48.0 | 5.06e-01 | 100.0% | 83.3% |
| 2lnjA00 | 3.40.1000.10 | Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich | 0.66 | 47.0 | 3.57e-01 | 92.0% | 32.9% |
| 1twfI01 | 2.20.25.10 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › | 0.64 | 31.0 | 3.71e-01 | 76.0% | 69.6% |
| 1wxrA03 | 3.30.160.280 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.63 | 45.0 | 4.49e-01 | 94.7% | 73.7% |
| 4nkbA01 | 3.30.1120.120 | Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › | 0.60 | 42.0 | 3.70e-01 | 77.3% | 49.1% |
| 3cqyB01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.58 | 50.0 | 3.82e-01 | 100.0% | 48.9% |
| 1rl2A01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.57 | 31.0 | 3.53e-01 | 85.3% | 71.4% |
| 3griB01 | 2.30.40.10 | Mainly Beta › Roll › Urease, subunit C; domain 1 › Urease, subunit C, domain 1 | 0.56 | 33.0 | 2.95e-01 | 100.0% | 38.5% |
| 3mdqA01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.55 | 48.0 | 4.11e-01 | 100.0% | 60.2% |
| 5ff5A01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.53 | 44.0 | 3.15e-01 | 94.7% | 76.8% |
| 1jdiA00 | 3.40.225.10 | Alpha Beta › 3-Layer(aba) Sandwich › L-fuculose-1-phosphate Aldolase › Class II aldolase/adducin N-terminal domain | 0.52 | 40.0 | 3.03e-01 | 88.0% | 53.8% |
| 1wquA00 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.52 | 44.0 | 3.85e-01 | 100.0% | 62.3% |
| 2i5hA01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.51 | 33.0 | 3.35e-01 | 70.7% | 66.7% |
| 4l80D00 | 3.20.20.60 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Phosphoenolpyruvate-binding domains | 0.51 | 43.0 | 2.87e-01 | 98.7% | 89.0% |
ECOD (21)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3592215 | 64.1.1.0 ↗ | beta meanders › WW domain-like › WW domain › WW domain | 0.74 | 37.0 | 4.34e-01 | 100.0% | 67.9% |
| 3559516 | 391.1.1.28 ↗ | few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module › CHRDL_1_2_C | 0.63 | 36.0 | 3.27e-01 | 77.3% | 43.0% |
| 3208203 | 375.1.1.19 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › RNA_POL_M_15KD | 0.61 | 30.0 | 3.36e-01 | 76.0% | 58.2% |
| 4060492 | 321.1.1.4 ↗ | a+b two layers › Glutamine synthetase-like › Glutamine synthetase/guanido kinase › Glutamine synthetase/guanido kinase › GatB_N | 0.59 | 50.0 | 3.33e-01 | 93.3% | 78.3% |
| 4317535 | 2484.1.1.41 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › AnmK | 0.59 | 51.0 | 3.61e-01 | 100.0% | 35.3% |
| 1108136 | 3773.1.1.1 ↗ | few secondary structure elements › E3 ligase HOIP C-terminal domain › E3 ligase HOIP C-terminal domain › E3 ligase HOIP C-terminal domain › E3_UbLigase_RBR | 0.59 | 36.0 | 2.99e-01 | 93.3% | 34.3% |
| 4026056 | 221.1.1.7 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › UBX | 0.59 | 40.0 | 3.43e-01 | 88.0% | 43.2% |
| 4179501 | 292.2.1.4 ↗ | a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain › Polo_box_2 | 0.58 | 43.0 | 3.69e-01 | 100.0% | 49.2% |
| 3315568 | 2484.1.1.67 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RVT_3 | 0.57 | 45.0 | 4.69e-01 | 100.0% | 94.3% |
| 3491764 | 389.1.1.0 ↗ | few secondary structure elements › EGF-like › EGF-related › EGF/Laminin | 0.57 | 28.0 | 3.87e-01 | 85.3% | 100.0% |
| 3803520 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.55 | 35.0 | 3.00e-01 | 98.7% | 39.2% |
| 4964393 | 236.3.1.1 ↗ | beta barrels › GroES-like › AF1531-like › AF1531-like › DUF655 | 0.55 | 38.0 | 3.82e-01 | 100.0% | 72.0% |
| 4982837 | 236.3.1.1 ↗ | beta barrels › GroES-like › AF1531-like › AF1531-like › DUF655 | 0.54 | 36.0 | 3.63e-01 | 70.7% | 69.3% |
| 4990970 | 236.3.1.1 ↗ | beta barrels › GroES-like › AF1531-like › AF1531-like › DUF655 | 0.52 | 36.0 | 3.47e-01 | 76.0% | 63.5% |
| 5017503 | 236.3.1.1 ↗ | beta barrels › GroES-like › AF1531-like › AF1531-like › DUF655 | 0.52 | 35.0 | 3.60e-01 | 76.0% | 72.0% |
| 4606510 | 4263.2.1.0 ↗ | a+b two layers › TTHA1528-like › FtsH Periplasmic Domain › FtsH Periplasmic Domain | 0.52 | 38.0 | 3.72e-01 | 100.0% | 70.6% |
| 5028546 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.52 | 34.0 | 3.54e-01 | 98.7% | 72.9% |
| 5056730 | 236.3.1.1 ↗ | beta barrels › GroES-like › AF1531-like › AF1531-like › DUF655 | 0.51 | 34.0 | 3.49e-01 | 72.0% | 69.3% |
| 4932405 | 236.3.1.1 ↗ | beta barrels › GroES-like › AF1531-like › AF1531-like › DUF655 | 0.51 | 35.0 | 3.51e-01 | 76.0% | 70.7% |
| None | — | 0.50 | 41.0 | 2.55e-01 | 92.0% | 24.1% | |
| 4948484 | 102.1.1.13 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › DUF655 | 0.50 | 34.0 | 2.73e-01 | 72.0% | 32.3% |