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LacPavin_0818_WC50_scaffold_3810_prodigal-single.1__X__X__00189

Bact-Vir

LacPavin_0818_WC50_scaffold_3810_prodigal-single.1__X__X__00189

Identity

Kingdom:
phage

Quality

95.7 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-130
PDB
CATH (38)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1cqmA00 3.30.70.60 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S6/Translation elongation factor EF1B 0.73 50.0 5.66e-01 100.0% 91.8%
1rtzA00 3.30.70.560 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK 0.72 50.0 4.73e-01 100.0% 59.9%
3ahpA00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.71 46.0 4.98e-01 100.0% 78.3%
2j5aA00 3.30.70.60 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S6/Translation elongation factor EF1B 0.69 48.0 5.17e-01 100.0% 85.8%
6wubf01 3.30.70.60 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S6/Translation elongation factor EF1B 0.69 48.0 5.43e-01 100.0% 97.9%
1vmbA00 3.30.70.60 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S6/Translation elongation factor EF1B 0.68 48.0 5.16e-01 100.0% 86.0%
2nyiA02 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.68 42.0 4.94e-01 100.0% 88.9%
1b7yB06 3.30.70.380 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ferrodoxin-fold anticodon-binding domain 0.68 43.0 5.15e-01 89.9% 95.3%
2rjzA02 3.30.70.60 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S6/Translation elongation factor EF1B 0.68 39.0 4.39e-01 93.0% 73.7%
8gk4C02 3.30.70.1430 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Multidrug efflux transporter AcrB pore domain 0.64 46.0 5.24e-01 98.4% 100.0%
2vfrA04 3.30.70.2520 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.64 43.0 4.95e-01 100.0% 95.7%
4mt1A06 3.30.70.1430 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Multidrug efflux transporter AcrB pore domain 0.64 47.0 5.17e-01 100.0% 97.0%
2qv6B02 3.30.70.270 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain 0.60 43.0 4.47e-01 100.0% 78.7%
3bdeB00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.60 42.0 4.62e-01 100.0% 93.9%
1bdfA01 3.30.1360.10 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › RNA polymerase, RBP11-like subunit 0.59 38.0 4.20e-01 88.4% 80.2%
4oycB00 3.30.300.30 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › ANL, C-terminal domain 0.59 39.0 4.55e-01 86.0% 98.9%
1we8A01 3.30.1370.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 0.57 35.0 4.12e-01 87.6% 91.7%
6wl5A01 3.20.80.10 Alpha Beta › Alpha-Beta Barrel › Multidrug-efflux Transporter 1 Regulator Bmrr; Chain A › Regulatory factor, effector binding domain 0.57 35.0 3.40e-01 100.0% 53.0%
4noiA01 3.30.1360.10 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › RNA polymerase, RBP11-like subunit 0.57 36.0 3.99e-01 88.4% 79.6%
1ivzA00 3.30.70.960 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › SEA domain 0.57 47.0 4.73e-01 100.0% 87.9%
5xoyB02 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.57 42.0 4.63e-01 100.0% 94.4%
1t0tV02 3.30.70.1030 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Apc35880; domain 1 0.56 40.0 4.28e-01 100.0% 85.6%
7c51A01 3.30.70.2970 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Protein of unknown function (DUF541), domain 2 0.56 45.0 4.81e-01 100.0% 99.1%
3uebF00 3.30.300.100 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › MTH677-like 0.55 40.0 4.43e-01 88.4% 97.0%
1v8cA02 3.30.1370.80 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › Molybdopterin cofactor biosynthesis MoaD-related, C-terminal domain 0.54 33.0 4.09e-01 90.7% 98.8%
2xbtA00 2.60.40.710 Mainly Beta › Sandwich › Immunoglobulin-like › Endoglucanase-like 0.54 43.0 4.05e-01 100.0% 69.0%
3kg4A00 3.30.70.2660 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.54 49.0 4.37e-01 100.0% 72.3%
1lqlA02 3.30.300.20 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain 0.54 40.0 4.34e-01 89.9% 97.1%
8c46A01 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.53 43.0 4.51e-01 100.0% 97.4%
3dcaA00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.53 40.0 4.08e-01 100.0% 79.2%
4dzdA02 3.30.70.1210 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Crispr-associated protein; domain 2 0.53 44.0 4.52e-01 100.0% 92.7%
4pxdA02 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.53 42.0 4.44e-01 100.0% 94.8%
3n5fA02 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.53 42.0 4.42e-01 100.0% 96.5%
1fvzA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.53 40.0 3.18e-01 80.6% 87.4%
2f7vA02 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.52 40.0 4.33e-01 100.0% 99.1%
4ewtA02 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.51 41.0 4.32e-01 100.0% 98.3%
1fx2A00 3.30.70.1230 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleotide cyclase, GGDEF domain 0.50 46.0 3.76e-01 100.0% 63.8%
5kckA00 3.60.120.10 Alpha Beta › 4-Layer Sandwich › Anthranilate synthase › Anthranilate synthase 0.50 44.0 3.04e-01 95.3% 31.0%
ECOD (66)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4610509 304.45.1.1 a+b two layers › Alpha-beta plaits › 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase, HPPK › 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase, HPPK › HPPK 0.72 52.0 4.80e-01 100.0% 59.4%
3956965 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.71 47.0 4.27e-01 100.0% 50.3%
5014488 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.70 47.0 4.70e-01 100.0% 65.9%
4554484 304.12.1.1 a+b two layers › Alpha-beta plaits › Ribosomal protein S6 › Ribosomal protein S6 › Ribosomal_S6 0.69 48.0 4.61e-01 100.0% 62.8%
3520250 304.12.1.1 a+b two layers › Alpha-beta plaits › Ribosomal protein S6 › Ribosomal protein S6 › Ribosomal_S6 0.69 48.0 5.32e-01 100.0% 92.0%
5062974 304.45.1.1 a+b two layers › Alpha-beta plaits › 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase, HPPK › 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase, HPPK › HPPK 0.68 48.0 4.63e-01 100.0% 63.5%
3911821 304.47.1.3 a+b two layers › Alpha-beta plaits › SEA domain › SEA domain › SEA_Gpr126 0.66 51.0 5.61e-01 100.0% 99.0%
3593784 304.126.1.0 a+b two layers › Alpha-beta plaits › ferredoxin-like domain in vacuolar ATP synthase subunit C › ferredoxin-like domain in vacuolar ATP synthase subunit C 0.66 41.0 4.88e-01 100.0% 94.1%
4951347 304.48.1.0 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like 0.65 48.0 4.49e-01 100.0% 63.2%
4422649 304.18.1.1 a+b two layers › Alpha-beta plaits › Anticodon-binding domain of PheRS › Anticodon-binding domain of PheRS › FDX-ACB 0.63 43.0 4.89e-01 96.9% 94.7%
5035531 304.48.1.32 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › TiaS-FLD 0.63 47.0 4.39e-01 100.0% 63.1%
4025112 304.114.1.2 a+b two layers › Alpha-beta plaits › Family B DNA polymerase insertion domain › Family B DNA polymerase insertion domain › POL3_N 0.63 46.0 5.15e-01 100.0% 99.0%
3710418 2484.1.1.34 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_exo1 0.62 46.0 3.32e-01 100.0% 26.7%
4562681 304.48.1.32 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › TiaS-FLD 0.62 47.0 4.32e-01 100.0% 60.6%
4502850 304.28.1.1 a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain › ACR_tran 0.62 46.0 4.93e-01 100.0% 90.0%
3375055 304.114.1.2 a+b two layers › Alpha-beta plaits › Family B DNA polymerase insertion domain › Family B DNA polymerase insertion domain › POL3_N 0.62 46.0 5.07e-01 97.7% 100.0%
4974732 304.48.1.32 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › TiaS-FLD 0.61 43.0 3.96e-01 100.0% 56.7%
2528752 304.114.1.2 a+b two layers › Alpha-beta plaits › Family B DNA polymerase insertion domain › Family B DNA polymerase insertion domain › POL3_N 0.61 44.0 4.89e-01 100.0% 99.0%
None 0.61 45.0 3.30e-01 99.2% 27.4%
3368695 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.61 47.0 3.34e-01 100.0% 26.9%
3417210 304.126.1.1 a+b two layers › Alpha-beta plaits › ferredoxin-like domain in vacuolar ATP synthase subunit C › ferredoxin-like domain in vacuolar ATP synthase subunit C › V_ATPase_I 0.61 38.0 4.40e-01 100.0% 88.9%
3109885 304.28.1.1 a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain › ACR_tran 0.61 45.0 4.84e-01 100.0% 90.0%
4387283 304.113.1.0 a+b two layers › Alpha-beta plaits › Alpha subunit of glutamate synthase, insertion domain › Alpha subunit of glutamate synthase, insertion domain 0.61 39.0 4.59e-01 96.1% 93.3%
3866917 304.47.1.1 a+b two layers › Alpha-beta plaits › SEA domain › SEA domain › SEA 0.60 50.0 5.07e-01 100.0% 88.5%
3837425 3922.1.1.336 alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › POL3_N 0.60 46.0 5.03e-01 100.0% 100.0%
3753506 304.47.1.1 a+b two layers › Alpha-beta plaits › SEA domain › SEA domain › SEA 0.59 49.0 4.97e-01 100.0% 87.7%
3208219 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.59 47.0 4.88e-01 98.4% 89.2%
4963976 331.6.1.1 a+b two layers › TBP-like › MoaD-related protein, C-terminal domain › MoaD-related protein, C-terminal domain › DUF1952 0.59 36.0 4.43e-01 89.1% 98.8%
3934465 304.4.1.52 a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › DUF7153 0.58 44.0 3.57e-01 100.0% 41.6%
4048379 304.55.1.24 a+b two layers › Alpha-beta plaits › Origin of replication-binding domains › Origin of replication-binding domains › DUF1424 0.58 50.0 4.26e-01 100.0% 58.5%
3727958 304.28.1.16 a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain › AtuA 0.57 44.0 4.59e-01 100.0% 88.3%
3917810 304.166.1.6 a+b two layers › Alpha-beta plaits › Nup54 ferredoxin-like domain › Nup54 ferredoxin-like domain › KIAA1549 0.57 44.0 4.82e-01 98.4% 100.0%
3407396 304.47.1.1 a+b two layers › Alpha-beta plaits › SEA domain › SEA domain › SEA 0.57 50.0 5.18e-01 100.0% 100.0%
4947808 304.25.1.11 a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain › Peptidase_M20 0.57 44.0 4.71e-01 100.0% 95.5%
3540649 11.1.1.789 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › KIAA1549 0.57 46.0 4.82e-01 100.0% 93.3%
3775329 304.47.1.1 a+b two layers › Alpha-beta plaits › SEA domain › SEA domain › SEA 0.57 49.0 4.91e-01 100.0% 90.8%
3605908 304.31.1.3 a+b two layers › Alpha-beta plaits › HMG-CoA reductase › NAD-binding domain of HMG-CoA reductase › FAZ1_cons 0.57 47.0 4.92e-01 97.7% 96.7%
3298862 304.5.1.1 a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › P-II 0.56 45.0 4.36e-01 100.0% 75.2%
3188146 304.28.1.16 a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain › AtuA 0.56 44.0 4.66e-01 100.0% 94.8%
2735821 886.1.1.2 a+b duplicates or obligate multimers › Probable bacterial effector-binding domain › Probable bacterial effector-binding domain › Probable bacterial effector-binding domain › GyrI-like 0.56 35.0 3.25e-01 99.2% 50.0%
3559614 304.47.1.1 a+b two layers › Alpha-beta plaits › SEA domain › SEA domain › SEA 0.56 50.0 4.80e-01 100.0% 86.2%
5039601 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.55 50.0 4.60e-01 100.0% 83.6%
3442608 304.20.1.1 a+b two layers › Alpha-beta plaits › PAP/Archaeal CCA-adding enzyme, C-terminal domain › PAP/Archaeal CCA-adding enzyme, C-terminal domain › PAP_RNA-bind 0.54 47.0 4.62e-01 100.0% 87.1%
2981912 304.25.1.1 a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain › M20_dimer 0.54 43.0 4.51e-01 100.0% 96.5%
135474 304.4.1.10 a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › DUF1330 0.53 41.0 4.06e-01 100.0% 77.8%
3720487 304.25.1.1 a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain › M20_dimer 0.53 42.0 4.35e-01 100.0% 90.8%
5016732 11.1.1.130 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Inhibitor_I42 0.53 35.0 3.77e-01 99.2% 78.2%
3910541 304.47.1.1 a+b two layers › Alpha-beta plaits › SEA domain › SEA domain › SEA 0.53 46.0 4.64e-01 100.0% 93.8%
4230774 101.1.9.117 alpha arrays › HTH › HTH › Putative DNA-binding domain › IF2_assoc 0.53 25.0 2.90e-01 86.8% 58.9%
3700802 304.20.1.0 a+b two layers › Alpha-beta plaits › PAP/Archaeal CCA-adding enzyme, C-terminal domain › PAP/Archaeal CCA-adding enzyme, C-terminal domain 0.53 48.0 4.63e-01 100.0% 90.3%
3386672 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.53 42.0 4.37e-01 100.0% 94.8%
3609924 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 48.0 4.80e-01 100.0% 99.2%
4962162 304.25.1.1 a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain › M20_dimer 0.52 43.0 4.51e-01 100.0% 97.4%
1780607 304.25.1.1 a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain › M20_dimer 0.52 42.0 4.40e-01 100.0% 96.5%
2167751 304.25.1.1 a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain › M20_dimer 0.52 42.0 4.37e-01 100.0% 95.0%
4005147 2011.1.1.23 a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Zn-dependent exopeptidases › Zn-dependent exopeptidases › M20_dimer 0.52 41.0 4.33e-01 100.0% 96.5%
3609026 304.20.1.0 a+b two layers › Alpha-beta plaits › PAP/Archaeal CCA-adding enzyme, C-terminal domain › PAP/Archaeal CCA-adding enzyme, C-terminal domain 0.52 47.0 4.51e-01 100.0% 91.0%
3740597 880.1.1.1 a+b duplicates or obligate multimers › ADC synthase › ADC synthase › ADC synthase › Chorismate_bind 0.51 45.0 3.06e-01 96.1% 29.4%
3164654 304.25.1.1 a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain › M20_dimer 0.51 41.0 4.29e-01 100.0% 96.5%
5310 304.25.1.1 a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain › M20_dimer 0.51 41.0 4.24e-01 100.0% 94.9%
4965450 304.25.1.1 a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain › M20_dimer 0.51 38.0 4.11e-01 100.0% 94.5%
3612888 304.31.1.0 a+b two layers › Alpha-beta plaits › HMG-CoA reductase › NAD-binding domain of HMG-CoA reductase 0.51 42.0 4.37e-01 100.0% 99.2%
3351675 304.7.1.2 a+b two layers › Alpha-beta plaits › Protease propeptides/inhibitors › Protease propeptides/inhibitors › Inhibitor_I9 0.51 35.0 3.91e-01 100.0% 95.8%
3392565 331.4.1.1 a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 › KA1 0.51 37.0 4.12e-01 87.6% 100.0%
4978106 304.25.1.1 a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain › M20_dimer 0.50 40.0 4.15e-01 100.0% 94.8%
5057185 882.1.1.4 a+b two layers › Ribosomal protein L5 › Ribosomal protein L5 › Ribosomal protein L5 › RNA_binding 0.50 43.0 4.16e-01 100.0% 83.4%