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LacPavin_0818_WC50_scaffold_3810_prodigal-single.1__X__X__00247
Bact-VirLacPavin_0818_WC50_scaffold_3810_prodigal-single.1__X__X__00247
Identity
- Kingdom:
- phage
Quality
88.5
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 1-40
Domain cluster:
representative
CATH (38)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3b2eF00 | 1.10.287.660 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.94 | 85.0 | 7.22e-01 | 100.0% | 64.5% |
| 2a26B01 | 4.10.860.10 | Few Secondary Structures › Irregular › DNA Excision Repair, Uvrb; Chain A › UVR domain | 0.93 | 79.0 | 7.65e-01 | 100.0% | 84.1% |
| 3a8pA02 | 6.10.140.680 | Special › Helix non-globular › Helix Hairpins › | 0.93 | 78.0 | 5.49e-01 | 100.0% | 32.5% |
| 3k6tB00 | 1.20.5.4010 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.92 | 83.0 | 7.68e-01 | 97.5% | 83.7% |
| 6gy8A01 | 1.20.1170.10 | Mainly Alpha › Up-down Bundle › Hemolysin E; Chain: A; › | 0.92 | 84.0 | 4.82e-01 | 100.0% | 45.2% |
| 4fxdA04 | 3.90.1600.10 | Alpha Beta › Alpha-Beta Complex › Palm domain of DNA polymerase › B family DNA polymerase, palm domain | 0.91 | 76.0 | 4.97e-01 | 100.0% | 24.2% |
| 1z0jB00 | 4.10.860.20 | Few Secondary Structures › Irregular › DNA Excision Repair, Uvrb; Chain A › Rabenosyn, Rab binding domain | 0.90 | 82.0 | 7.53e-01 | 100.0% | 78.4% |
| 1yzmA00 | 4.10.860.20 | Few Secondary Structures › Irregular › DNA Excision Repair, Uvrb; Chain A › Rabenosyn, Rab binding domain | 0.90 | 82.0 | 7.80e-01 | 100.0% | 87.0% |
| 2lf0A01 | 4.10.860.10 | Few Secondary Structures › Irregular › DNA Excision Repair, Uvrb; Chain A › UVR domain | 0.89 | 78.0 | 6.85e-01 | 100.0% | 66.7% |
| 1kfdA02 | 1.20.1060.10 | Mainly Alpha › Up-down Bundle › Taq DNA Polymerase; Chain T, domain 4 › Taq DNA Polymerase; Chain T, domain 4 | 0.89 | 73.0 | 5.96e-01 | 100.0% | 50.7% |
| 4gmnA00 | 1.25.10.10 | Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant | 0.89 | 78.0 | 4.29e-01 | 100.0% | 7.3% |
| 3fxdC00 | 1.20.5.420 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C | 0.89 | 78.0 | 7.31e-01 | 100.0% | 86.0% |
| 1hr5A00 | 1.20.5.420 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C | 0.88 | 79.0 | 7.42e-01 | 100.0% | 97.9% |
| 3rq9A00 | 1.10.287.2500 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.86 | 76.0 | 6.08e-01 | 100.0% | 64.1% |
| 1ni3A03 | 1.10.150.300 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Obg-related GTPase Ych/YyaF, coiled-coil domain | 0.86 | 76.0 | 5.79e-01 | 100.0% | 56.0% |
| 1bgfA00 | 1.10.532.10 | Mainly Alpha › Orthogonal Bundle › Transcription Factor, Stat-4 › STAT transcription factor, N-terminal domain | 0.86 | 75.0 | 5.23e-01 | 100.0% | 32.3% |
| 2yxyA01 | 1.10.287.880 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Hypothetical protein YfhH domain | 0.85 | 75.0 | 6.99e-01 | 100.0% | 80.0% |
| 1grjA01 | 1.10.287.180 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Transcription elongation factor, GreA/GreB, N-terminal domain | 0.84 | 73.0 | 6.00e-01 | 100.0% | 59.5% |
| 2rklF00 | 1.20.5.420 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C | 0.84 | 72.0 | 6.65e-01 | 100.0% | 76.9% |
| 1e52A00 | 4.10.860.10 | Few Secondary Structures › Irregular › DNA Excision Repair, Uvrb; Chain A › UVR domain | 0.79 | 68.0 | 6.11e-01 | 100.0% | 71.4% |
| 1luwA01 | 1.10.287.990 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Fe,Mn superoxide dismutase (SOD) domain | 0.76 | 63.0 | 5.51e-01 | 100.0% | 60.9% |
| 8b6jF01 | 1.10.287.20 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Ubiquinol-cytochrome C reductase hinge domain | 0.76 | 64.0 | 5.33e-01 | 92.5% | 62.7% |
| 4v1gA00 | 1.20.20.10 | Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C | 0.72 | 60.0 | 4.85e-01 | 100.0% | 71.8% |
| 6tkvA01 | 1.10.287.1060 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like | 0.72 | 60.0 | 5.18e-01 | 100.0% | 64.7% |
| 4bx8A03 | 3.90.830.10 | Alpha Beta › Alpha-Beta Complex › Syntaxin Binding Protein 1; Chain A, domain 2 › Sec1/Munc18 (SM) protein, domain 3a | 0.70 | 55.0 | 4.27e-01 | 100.0% | 37.0% |
| 2rbdA01 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.70 | 57.0 | 3.99e-01 | 100.0% | 27.3% |
| 2jdiH02 | 1.20.5.440 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › ATP synthase delta/epsilon subunit, C-terminal domain | 0.69 | 54.0 | 5.42e-01 | 97.5% | 100.0% |
| 2d5wA01 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.69 | 56.0 | 3.48e-01 | 95.0% | 19.4% |
| 2aplA02 | 1.10.8.340 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › PG0816-like | 0.69 | 55.0 | 4.46e-01 | 92.5% | 45.7% |
| 2gv9A05 | 1.10.287.690 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › B family DNA polymerase, finger domain | 0.68 | 55.0 | 5.03e-01 | 100.0% | 66.1% |
| 3besR03 | 6.10.140.1480 | Special › Helix non-globular › Helix Hairpins › | 0.67 | 54.0 | 4.87e-01 | 90.0% | 85.7% |
| 2y1vA04 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.67 | 52.0 | 3.55e-01 | 100.0% | 21.6% |
| 1kaeA03 | 1.20.5.1300 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.66 | 51.0 | 4.76e-01 | 95.0% | 87.3% |
| 3lphC00 | 6.10.140.630 | Special › Helix non-globular › Helix Hairpins › | 0.65 | 54.0 | 4.92e-01 | 100.0% | 69.0% |
| 4hb1A00 | 1.20.5.420 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C | 0.64 | 52.0 | 5.14e-01 | 100.0% | 90.9% |
| 2j5iA02 | 6.10.250.2850 | Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.61 | 48.0 | 4.88e-01 | 92.5% | 92.1% |
| 3q1pA01 | 6.10.250.1120 | Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.60 | 46.0 | 4.65e-01 | 92.5% | 97.4% |
| 3e21A00 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.55 | 36.0 | 3.64e-01 | 92.5% | 67.5% |
ECOD (51)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3638319 | 192.7.1.56 ↗ | alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › CHD5 | 0.99 | 93.0 | 6.65e-01 | 100.0% | 40.0% |
| 3776620 | 3710.1.1.1 ↗ | alpha bundles › Golgi to ER traffic protein 1 cytosolic domain › Golgi to ER traffic protein 1 cytosolic domain › Golgi to ER traffic protein 1 cytosolic domain › CHD5 | 0.98 | 93.0 | 5.82e-01 | 100.0% | 23.7% |
| 3881288 | 3710.1.1.1 ↗ | alpha bundles › Golgi to ER traffic protein 1 cytosolic domain › Golgi to ER traffic protein 1 cytosolic domain › Golgi to ER traffic protein 1 cytosolic domain › CHD5 | 0.98 | 92.0 | 6.42e-01 | 100.0% | 36.4% |
| 3693025 | 3710.1.1.1 ↗ | alpha bundles › Golgi to ER traffic protein 1 cytosolic domain › Golgi to ER traffic protein 1 cytosolic domain › Golgi to ER traffic protein 1 cytosolic domain › CHD5 | 0.98 | 92.0 | 7.80e-01 | 100.0% | 66.7% |
| 3237324 | 3710.1.1.1 ↗ | alpha bundles › Golgi to ER traffic protein 1 cytosolic domain › Golgi to ER traffic protein 1 cytosolic domain › Golgi to ER traffic protein 1 cytosolic domain › CHD5 | 0.98 | 92.0 | 7.80e-01 | 100.0% | 66.7% |
| 3285492 | 507.1.1.2 ↗ | alpha arrays › DnaB helicase N-terminal domain-related › DnaB helicase N-terminal domain-related › DnaB helicase N-terminal domain-related › DnaG_DnaB_bind | 0.98 | 92.0 | 5.81e-01 | 100.0% | 24.4% |
| 4476610 | 3710.1.1.1 ↗ | alpha bundles › Golgi to ER traffic protein 1 cytosolic domain › Golgi to ER traffic protein 1 cytosolic domain › Golgi to ER traffic protein 1 cytosolic domain › CHD5 | 0.98 | 91.0 | 6.53e-01 | 100.0% | 40.0% |
| 4106385 | 3291.1.1.89 ↗ | alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › CHD5 | 0.97 | 91.0 | 6.51e-01 | 100.0% | 40.0% |
| 4300890 | 3710.1.1.1 ↗ | alpha bundles › Golgi to ER traffic protein 1 cytosolic domain › Golgi to ER traffic protein 1 cytosolic domain › Golgi to ER traffic protein 1 cytosolic domain › CHD5 | 0.97 | 91.0 | 7.49e-01 | 100.0% | 61.5% |
| 4670545 | 3711.1.1.61 ↗ | alpha bundles › LTXXQ motif family protein › LTXXQ motif family protein › LTXXQ motif family protein › CHD5 | 0.97 | 90.0 | 6.70e-01 | 100.0% | 44.4% |
| 4411992 | 3710.1.1.1 ↗ | alpha bundles › Golgi to ER traffic protein 1 cytosolic domain › Golgi to ER traffic protein 1 cytosolic domain › Golgi to ER traffic protein 1 cytosolic domain › CHD5 | 0.97 | 91.0 | 6.43e-01 | 100.0% | 38.1% |
| 4128596 | 3710.1.1.1 ↗ | alpha bundles › Golgi to ER traffic protein 1 cytosolic domain › Golgi to ER traffic protein 1 cytosolic domain › Golgi to ER traffic protein 1 cytosolic domain › CHD5 | 0.97 | 91.0 | 7.49e-01 | 100.0% | 61.5% |
| 4479100 | 192.29.1.244 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › CHD5 | 0.97 | 90.0 | 6.39e-01 | 100.0% | 38.1% |
| 3705830 | 192.15.1.2 ↗ | alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains › Mod_r | 0.97 | 91.0 | 5.68e-01 | 100.0% | 22.9% |
| 4363885 | 3922.1.1.139 ↗ | alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › CHD5 | 0.97 | 90.0 | 6.39e-01 | 100.0% | 38.1% |
| 3744786 | 3710.1.1.1 ↗ | alpha bundles › Golgi to ER traffic protein 1 cytosolic domain › Golgi to ER traffic protein 1 cytosolic domain › Golgi to ER traffic protein 1 cytosolic domain › CHD5 | 0.97 | 90.0 | 6.55e-01 | 100.0% | 42.1% |
| 4838801 | 3710.1.1.1 ↗ | alpha bundles › Golgi to ER traffic protein 1 cytosolic domain › Golgi to ER traffic protein 1 cytosolic domain › Golgi to ER traffic protein 1 cytosolic domain › CHD5 | 0.97 | 90.0 | 7.43e-01 | 100.0% | 61.5% |
| 4507133 | 3710.1.1.1 ↗ | alpha bundles › Golgi to ER traffic protein 1 cytosolic domain › Golgi to ER traffic protein 1 cytosolic domain › Golgi to ER traffic protein 1 cytosolic domain › CHD5 | 0.97 | 90.0 | 6.56e-01 | 100.0% | 42.1% |
| 4317258 | 3710.1.1.1 ↗ | alpha bundles › Golgi to ER traffic protein 1 cytosolic domain › Golgi to ER traffic protein 1 cytosolic domain › Golgi to ER traffic protein 1 cytosolic domain › CHD5 | 0.97 | 90.0 | 7.43e-01 | 100.0% | 61.5% |
| 3527609 | 376.1.3.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger | 0.96 | 88.0 | 5.61e-01 | 100.0% | 24.2% |
| 3926919 | 3710.1.1.0 ↗ | alpha bundles › Golgi to ER traffic protein 1 cytosolic domain › Golgi to ER traffic protein 1 cytosolic domain › Golgi to ER traffic protein 1 cytosolic domain | 0.95 | 87.0 | 7.44e-01 | 100.0% | 66.7% |
| 4328747 | 148.1.3.209 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › GrpE | 0.95 | 87.0 | 6.05e-01 | 100.0% | 35.1% |
| 4402810 | 3860.1.1.129 ↗ | alpha bundles › Myosin VI lever arm › Myosin VI lever arm › Myosin VI lever arm › GrpE | 0.95 | 87.0 | 6.27e-01 | 100.0% | 40.0% |
| 3585864 | 192.1.1.0 ↗ | alpha bundles › Long alpha-hairpin › GreA transcript cleavage protein, N-terminal domain › GreA transcript cleavage protein, N-terminal domain | 0.94 | 86.0 | 5.35e-01 | 100.0% | 21.1% |
| 3504915 | 605.4.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › ROP protein › ROP protein | 0.94 | 85.0 | 5.43e-01 | 100.0% | 23.5% |
| 4049273 | 3710.1.1.1 ↗ | alpha bundles › Golgi to ER traffic protein 1 cytosolic domain › Golgi to ER traffic protein 1 cytosolic domain › Golgi to ER traffic protein 1 cytosolic domain › CHD5 | 0.94 | 85.0 | 6.93e-01 | 100.0% | 57.1% |
| 3231978 | 3291.1.1.0 ↗ | alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related | 0.94 | 85.0 | 5.44e-01 | 100.0% | 24.2% |
| 3204772 | 192.1.1.31 ↗ | alpha bundles › Long alpha-hairpin › GreA transcript cleavage protein, N-terminal domain › GreA transcript cleavage protein, N-terminal domain › Cep57_MT_bd | 0.93 | 85.0 | 6.17e-01 | 100.0% | 40.0% |
| 3485227 | 3652.1.1.0 ↗ | alpha duplicates or obligate multimers › Qua1 › Qua1 › Qua1 | 0.93 | 74.0 | 7.82e-01 | 87.5% | 100.0% |
| 4634678 | 507.1.1.0 ↗ | alpha arrays › DnaB helicase N-terminal domain-related › DnaB helicase N-terminal domain-related › DnaB helicase N-terminal domain-related | 0.93 | 83.0 | 5.44e-01 | 100.0% | 25.8% |
| 3183435 | 109.4.1.1126 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_SYO1 | 0.92 | 83.0 | 4.92e-01 | 100.0% | 15.7% |
| 3480252 | 604.12.1.1 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › MIT | 0.90 | 79.0 | 6.41e-01 | 100.0% | 53.3% |
| 4438372 | 2004.1.1.5 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran | 0.90 | 79.0 | 4.59e-01 | 100.0% | 13.1% |
| 2849435 | 192.27.1.1 ↗ | alpha bundles › Long alpha-hairpin › Helical hairpin in putative tRNA methyltransferase › Helical hairpin in putative tRNA methyltransferase › TrmK | 0.90 | 79.0 | 6.67e-01 | 100.0% | 60.6% |
| 184768 | 3331.1.1.1 ↗ | a+b two layers › Uncharacterized protein yibL › Uncharacterized protein yibL › Uncharacterized protein yibL › DUF2810 | 0.89 | 78.0 | 5.50e-01 | 100.0% | 33.3% |
| 3591139 | 109.4.1.508 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › KBP_C | 0.88 | 78.0 | 4.95e-01 | 100.0% | 21.1% |
| 3328312 | 192.17.1.0 ↗ | alpha bundles › Long alpha-hairpin › Rabenosyn-5 Rab-binding domain-like › Rabenosyn-5 Rab-binding domain-like | 0.88 | 79.0 | 7.63e-01 | 100.0% | 88.9% |
| 1108845 | 150.1.1.0 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin | 0.88 | 79.0 | 7.46e-01 | 100.0% | 97.9% |
| 4014888 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.88 | 77.0 | 4.58e-01 | 100.0% | 14.3% |
| 3989824 | 192.1.1.0 ↗ | alpha bundles › Long alpha-hairpin › GreA transcript cleavage protein, N-terminal domain › GreA transcript cleavage protein, N-terminal domain | 0.86 | 75.0 | 7.05e-01 | 100.0% | 80.0% |
| 3281203 | 604.17.1.0 ↗ | alpha bundles › Spectrin repeat-like › MTH_863 C-terminal domain-like › MTH_863 C-terminal domain-like | 0.86 | 76.0 | 7.07e-01 | 100.0% | 80.0% |
| 3310874 | 192.17.1.0 ↗ | alpha bundles › Long alpha-hairpin › Rabenosyn-5 Rab-binding domain-like › Rabenosyn-5 Rab-binding domain-like | 0.85 | 72.0 | 7.24e-01 | 97.5% | 97.5% |
| 4432094 | 192.11.1.1 ↗ | alpha bundles › Long alpha-hairpin › C-terminal UvrC-binding domain of UvrB › C-terminal UvrC-binding domain of UvrB › UVR | 0.85 | 74.0 | 6.98e-01 | 100.0% | 83.3% |
| 4877881 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.80 | 67.0 | 6.78e-01 | 100.0% | 100.0% |
| 3176098 | 4198.1.1.0 ↗ | alpha arrays › TerB-like › TerB-like › TerB-like | 0.79 | 67.0 | 4.52e-01 | 100.0% | 27.1% |
| 3180974 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.78 | 62.0 | 5.72e-01 | 100.0% | 67.3% |
| 3770592 | 192.15.1.145 ↗ | alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains › Xin | 0.69 | 55.0 | 4.84e-01 | 100.0% | 61.4% |
| 5076739 | 101.1.2.141 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_24 | 0.66 | 50.0 | 3.54e-01 | 82.5% | 26.9% |
| 4056724 | 192.6.1.0 ↗ | alpha bundles › Long alpha-hairpin › Epsilon subunit of F1F0-ATP synthase C-terminal domain › Epsilon subunit of F1F0-ATP synthase C-terminal domain | 0.66 | 51.0 | 5.03e-01 | 100.0% | 95.6% |
| 4024281 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.62 | 52.0 | 4.75e-01 | 100.0% | 96.4% |
| 4532029 | 2007.1.19.4 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › FabD/lysophospholipase-like › SAT | 0.60 | 47.0 | 2.82e-01 | 100.0% | 12.6% |