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LacPavin_0818_WC50_scaffold_3810_prodigal-single.1__X__X__00280

Bact-Vir

LacPavin_0818_WC50_scaffold_3810_prodigal-single.1__X__X__00280

Identity

Kingdom:
phage

Quality

87.7 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 8-56
PDB
Domain cluster: representative
CATH (62)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6s2wA01 3.30.2260.10 Alpha Beta › 2-Layer Sandwich › ERH-like fold › Enhancer of rudimentary 0.72 63.0 5.32e-01 100.0% 68.3%
7ejoB01 3.30.2260.10 Alpha Beta › 2-Layer Sandwich › ERH-like fold › Enhancer of rudimentary 0.71 62.0 5.23e-01 100.0% 72.3%
5d1oA02 3.30.1490.70 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › 0.70 54.0 4.85e-01 100.0% 58.9%
3sd2A01 2.60.40.3080 Mainly Beta › Sandwich › Immunoglobulin-like › 0.69 55.0 4.76e-01 100.0% 55.8%
5b08A00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.69 60.0 4.79e-01 100.0% 96.0%
3d33A00 2.60.40.3080 Mainly Beta › Sandwich › Immunoglobulin-like › 0.69 57.0 4.61e-01 100.0% 47.9%
2xqyA03 2.60.40.3190 Mainly Beta › Sandwich › Immunoglobulin-like › Herpesvirus glycoprotein H, C-terminal domain 0.69 58.0 4.32e-01 100.0% 36.1%
2vugA02 3.30.1490.70 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › 0.69 52.0 4.66e-01 100.0% 58.3%
2pn5A05 2.60.40.1930 Mainly Beta › Sandwich › Immunoglobulin-like › Macroglobulin (MG2) domain 0.66 55.0 4.40e-01 100.0% 46.9%
8afoA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.66 50.0 4.19e-01 100.0% 46.6%
2pw9C03 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.66 54.0 4.00e-01 100.0% 33.3%
3tp4B02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.66 53.0 4.26e-01 100.0% 46.2%
1yd0A00 3.40.1440.10 Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › GIY-YIG endonuclease 0.66 55.0 4.67e-01 100.0% 55.1%
2ibgA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.66 52.0 4.15e-01 100.0% 43.1%
4hsaF02 2.60.40.2150 Mainly Beta › Sandwich › Immunoglobulin-like › Interleukin-17 receptor A/B, fibronectin-III-like domain 2 0.65 59.0 4.55e-01 100.0% 49.5%
2iboA00 3.30.70.930 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.65 57.0 4.71e-01 100.0% 85.4%
3eipA00 3.10.50.20 Alpha Beta › Roll › Chitinase A; domain 3 › Cloacin immunity protein 0.64 57.0 4.75e-01 100.0% 88.1%
4kyzA00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.64 56.0 3.88e-01 100.0% 30.5%
3vpbA02 3.30.1490.20 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain 0.63 50.0 4.59e-01 100.0% 65.2%
2kr7A01 3.10.50.40 Alpha Beta › Roll › Chitinase A; domain 3 › 0.63 54.0 4.46e-01 100.0% 74.5%
1zpwX00 3.30.70.240 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.63 52.0 4.56e-01 100.0% 76.8%
5eiqA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.63 50.0 4.11e-01 100.0% 47.3%
4d7sA02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.63 49.0 3.66e-01 100.0% 33.1%
3tqtA03 3.30.1490.20 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain 0.63 46.0 4.25e-01 100.0% 60.3%
4kq7A02 2.60.120.1390 Mainly Beta › Sandwich › Jelly Rolls › Protein of unknown function DUF2961 0.62 52.0 3.51e-01 100.0% 36.5%
1qysA00 3.30.1710.10 Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein 0.62 52.0 4.36e-01 100.0% 55.4%
4kq7A01 2.60.120.1390 Mainly Beta › Sandwich › Jelly Rolls › Protein of unknown function DUF2961 0.61 53.0 3.72e-01 100.0% 40.7%
2dt8A01 3.40.50.10170 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.61 42.0 3.03e-01 100.0% 24.2%
5dcaA08 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.61 54.0 4.17e-01 100.0% 50.9%
2r7kA03 3.30.1490.20 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain 0.61 48.0 4.52e-01 100.0% 72.1%
1gtdA00 3.30.1280.10 Alpha Beta › 2-Layer Sandwich › Mth169; Chain: A , › Phosphoribosylformylglycinamidine synthase subunit PurS 0.60 49.0 4.34e-01 100.0% 92.6%
5d8dD03 3.30.1490.20 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain 0.60 43.0 4.10e-01 100.0% 62.1%
5utkA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.60 45.0 3.78e-01 100.0% 45.6%
7y8sA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.60 49.0 4.05e-01 100.0% 49.5%
6g9sA01 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.59 40.0 2.48e-01 73.5% 85.8%
3x17A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.59 51.0 4.07e-01 100.0% 52.9%
3mfdA01 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.58 49.0 3.23e-01 100.0% 80.5%
6i3mG01 3.90.550.10 Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 0.58 49.0 3.12e-01 100.0% 18.4%
2o6cA00 2.60.40.2480 Mainly Beta › Sandwich › Immunoglobulin-like › Periplasmic metal-binding protein Tp34-type 0.58 49.0 3.48e-01 100.0% 30.4%
2ckaA01 3.40.5.120 Alpha Beta › 3-Layer(aba) Sandwich › Ribosomal Protein L9; domain 1 › 0.57 41.0 4.15e-01 100.0% 79.6%
2hevF00 2.60.120.40 Mainly Beta › Sandwich › Jelly Rolls › 0.57 44.0 3.35e-01 100.0% 34.1%
4wd3A02 3.30.1490.20 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain 0.57 46.0 4.17e-01 98.0% 65.3%
4gn2A00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.57 42.0 2.75e-01 81.6% 83.7%
2xbzA00 2.60.40.2380 Mainly Beta › Sandwich › Immunoglobulin-like › 0.57 46.0 3.37e-01 100.0% 33.3%
3tw8A01 3.30.450.200 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Longin module 0.56 38.0 2.87e-01 75.5% 25.4%
1mw7A02 3.30.70.980 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › YebC, transcriptional regulation domain 0.56 43.0 3.73e-01 100.0% 51.7%
1t4aA00 3.30.1280.10 Alpha Beta › 2-Layer Sandwich › Mth169; Chain: A , › Phosphoribosylformylglycinamidine synthase subunit PurS 0.56 47.0 4.10e-01 100.0% 100.0%
3dadA00 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.56 43.0 2.65e-01 87.8% 23.1%
4llgM00 3.10.20.510 Alpha Beta › Roll › Ubiquitin-like (UB roll) › RNA polymerase inhibitor 0.56 41.0 4.12e-01 100.0% 88.0%
1mg7A01 3.30.70.1000 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Switch protein XOL-1, GHMP-like 0.54 43.0 3.17e-01 100.0% 78.9%
2ww8A05 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 45.0 3.46e-01 100.0% 43.1%
6aj3B00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.54 45.0 3.19e-01 100.0% 55.4%
1a9xA03 3.30.1490.20 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain 0.54 40.0 3.75e-01 100.0% 64.3%
5x6vF00 3.30.450.190 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.53 48.0 3.56e-01 100.0% 61.9%
5eo9B01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 38.0 3.10e-01 83.7% 43.6%
3zn4A00 2.60.120.1180 Mainly Beta › Sandwich › Jelly Rolls › 0.52 46.0 3.26e-01 100.0% 49.0%
1ktbA02 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.52 35.0 3.02e-01 100.0% 38.5%
4ftxB01 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.52 46.0 3.39e-01 100.0% 76.6%
3r7wC02 3.30.450.190 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.52 47.0 3.59e-01 100.0% 64.5%
5x6vG00 3.30.450.190 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.51 46.0 3.32e-01 100.0% 64.4%
6kghA02 3.30.450.330 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.51 45.0 3.16e-01 100.0% 56.5%
3r7wB02 3.30.450.190 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.50 45.0 3.35e-01 100.0% 62.7%
ECOD (56)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3415506 11.1.1.2 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 0.77 62.0 4.72e-01 100.0% 39.1%
3637998 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.73 44.0 5.33e-01 79.6% 100.0%
3404658 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.72 63.0 5.35e-01 100.0% 62.5%
4945828 821.1.1.0 a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease 0.70 54.0 4.44e-01 85.7% 85.6%
3540023 382.1.1.1 few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like › UPAR_LY6 0.70 57.0 4.88e-01 100.0% 57.8%
None 0.68 55.0 3.12e-01 100.0% 8.1%
3496981 10.12.1.0 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix 0.67 49.0 3.21e-01 100.0% 16.7%
3590261 822.3.1.1 a+b two layers › GYF/BRK domain-like › conserved domain protein SP_1775 › conserved domain protein SP_1775 › DUF4649 0.67 53.0 4.90e-01 100.0% 67.6%
3576119 11.2.1.1 beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 0.66 58.0 4.02e-01 100.0% 43.0%
4097380 325.1.1.3 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › CO dehydrogenase molybdoprotein N-domain-like › GARS_C 0.66 55.0 3.96e-01 100.0% 53.8%
3986774 821.1.1.9 a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › PF30054 0.66 57.0 4.58e-01 100.0% 49.0%
3217904 109.3.1.1 alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank 0.66 51.0 3.27e-01 100.0% 17.2%
3923391 10.12.1.44 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Ofd1_CTDD 0.65 49.0 3.15e-01 100.0% 16.7%
5059717 10.1.2.0 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.64 53.0 4.26e-01 100.0% 47.4%
4004517 11.1.1.1138 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PF29285 0.63 50.0 4.26e-01 100.0% 52.9%
3584610 10.1.1.0 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.63 54.0 3.85e-01 100.0% 34.7%
3347090 221.1.1.159 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › DUF7138 0.62 45.0 3.88e-01 100.0% 47.1%
3177841 221.1.1.52 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › Ubiquitin_2 0.61 49.0 4.12e-01 100.0% 50.0%
3625061 10.1.1.10 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › MAM 0.61 52.0 3.56e-01 100.0% 27.4%
5070055 10.1.2.0 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.61 50.0 3.76e-01 100.0% 35.4%
3561750 11.1.1.178 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_2 0.60 49.0 3.97e-01 100.0% 47.4%
3867717 11.1.1.179 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_3 0.59 48.0 3.91e-01 100.0% 47.4%
3192910 10.32.1.0 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.59 50.0 3.54e-01 100.0% 38.2%
3510118 4076.1.1.0 a+b two layers › L9 N-domain-like › L9 N-domain-like › L9 N-domain-like 0.59 43.0 4.21e-01 100.0% 72.7%
3164679 11.1.1.335 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › GlgB_N 0.59 48.0 3.81e-01 100.0% 45.0%
5014684 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.58 46.0 4.43e-01 100.0% 79.3%
3501051 221.1.1.6 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA 0.57 45.0 3.63e-01 98.0% 57.4%
4978002 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.57 42.0 3.01e-01 81.6% 51.3%
4180988 1119.1.1.1 a+b complex topology › 6-carboxyhexanoate-CoA ligase › 6-carboxyhexanoate-CoA ligase › 6-carboxyhexanoate-CoA ligase › BioW 0.56 43.0 2.92e-01 100.0% 19.3%
3549762 11.1.1.178 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_2 0.56 47.0 3.64e-01 100.0% 41.7%
4945022 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.56 51.0 3.95e-01 100.0% 73.0%
3689809 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.55 42.0 4.27e-01 100.0% 95.6%
4020851 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.55 49.0 3.58e-01 100.0% 66.2%
3939857 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.55 40.0 2.93e-01 83.7% 53.5%
3739712 223.2.1.10 a+b three layers › Profilin-like › profilin-like › profilin-like › Gtr1_RagA 0.55 49.0 3.54e-01 100.0% 60.0%
5062029 210.2.1.3 a+b four layers › Ntn/PP2C › Protein serine/threonine phosphatase 2C, catalytic domain › Protein serine/threonine phosphatase 2C, catalytic domain › PP2C_2 0.54 43.0 2.84e-01 100.0% 30.0%
3243381 10.1.1.0 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.54 44.0 3.24e-01 100.0% 37.3%
3645411 223.1.1.79 a+b three layers › Profilin-like › sensor domains › sensor domains › GAF_NLP 0.54 44.0 2.96e-01 100.0% 60.9%
5046495 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.54 48.0 3.80e-01 100.0% 55.0%
3307728 10.32.1.192 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › C-JID 0.54 43.0 3.18e-01 100.0% 41.2%
4944953 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.54 48.0 3.72e-01 100.0% 76.2%
3736912 223.2.1.10 a+b three layers › Profilin-like › profilin-like › profilin-like › Gtr1_RagA 0.54 48.0 3.48e-01 100.0% 65.4%
5063066 205.1.1.17 a+b two layers › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › Fer4_11 0.54 40.0 2.81e-01 87.8% 91.8%
4941674 205.1.1.19 a+b two layers › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › Fer4_13 0.53 43.0 3.90e-01 100.0% 93.3%
3966115 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.53 48.0 3.28e-01 100.0% 47.5%
5042962 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.52 37.0 3.09e-01 85.7% 49.5%
4382604 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.52 48.0 3.63e-01 100.0% 54.3%
3698579 223.2.1.5 a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 0.52 47.0 3.54e-01 100.0% 74.5%
3924472 10.1.1.0 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.52 42.0 2.98e-01 100.0% 27.4%
4018561 223.2.1.10 a+b three layers › Profilin-like › profilin-like › profilin-like › Gtr1_RagA 0.51 46.0 3.24e-01 100.0% 71.0%
5046180 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.51 46.0 3.38e-01 100.0% 56.0%
3727505 223.2.1.5 a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 0.51 46.0 3.61e-01 100.0% 81.0%
3407363 223.2.1.10 a+b three layers › Profilin-like › profilin-like › profilin-like › Gtr1_RagA 0.51 45.0 3.22e-01 100.0% 55.9%
3794632 223.2.1.10 a+b three layers › Profilin-like › profilin-like › profilin-like › Gtr1_RagA 0.51 45.0 3.18e-01 100.0% 57.4%
4977323 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.50 44.0 3.29e-01 100.0% 62.4%
4195895 10.4.1.14 beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › AGRB_N 0.50 40.0 2.80e-01 91.8% 26.5%