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LacPavin_0818_WC50_scaffold_3810_prodigal-single.1__X__X__00285
Bact-VirLacPavin_0818_WC50_scaffold_3810_prodigal-single.1__X__X__00285
Identity
- Kingdom:
- phage
Quality
72.6
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 557-612
D2
medium
residues 675-728
Domain cluster:
rep: EF153632.1__ABL96743.1__BcepF1.012__00012__D152-203
CATH (6)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3k0xA00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.57 | 48.0 | 4.05e-01 | 100.0% | 72.7% |
| 1rfmA02 | 3.30.1370.60 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › Malate/L-lactate/L-sulpholactate dehydrogenase, NADPH binding domain | 0.52 | 40.0 | 2.81e-01 | 90.7% | 71.6% |
| 1z2iA02 | 3.30.1370.60 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › Malate/L-lactate/L-sulpholactate dehydrogenase, NADPH binding domain | 0.52 | 40.0 | 3.05e-01 | 90.7% | 89.8% |
| 6oodA01 | 2.40.480.10 | Mainly Beta › Beta Barrel › AOC barrel-like › Allene oxide cyclase-like | 0.51 | 43.0 | 3.16e-01 | 96.3% | 45.9% |
| 3fveA01 | 3.10.310.10 | Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 | 0.51 | 42.0 | 3.16e-01 | 100.0% | 63.6% |
| 3ga8A00 | 3.10.20.860 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.51 | 33.0 | 3.14e-01 | 72.2% | 55.2% |
ECOD (5)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5073687 | 10.13.1.1 ↗ | beta sandwiches › jelly-roll › Calcium ATPase, transduction domain A › Calcium ATPase, transduction domain A › E1-E2_ATPase | 0.60 | 49.0 | 4.14e-01 | 94.4% | 91.6% |
| 3195689 | 2.1.1.7 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › S1 | 0.57 | 43.0 | 3.65e-01 | 83.3% | 82.1% |
| 3930531 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.52 | 40.0 | 3.44e-01 | 88.9% | 80.0% |
| 5031701 | 375.1.1.55 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › MqsA_antitoxin | 0.51 | 34.0 | 3.20e-01 | 72.2% | 56.9% |
| 3314467 | 9.13.1.1 ↗ | beta barrels › Lipocalins/Streptavidin › AOC barrel-like › AOC barrel-like › Dirigent | 0.50 | 42.0 | 3.11e-01 | 96.3% | 43.2% |