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LacPavin_0818_WC50_scaffold_3810_prodigal-single.1__X__X__00295
Bact-VirLacPavin_0818_WC50_scaffold_3810_prodigal-single.1__X__X__00295
Identity
- Kingdom:
- phage
Quality
71.8
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 4-158
Domain cluster:
representative
CATH (3)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2gmyD00 | 1.20.1290.10 | Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like | 0.73 | 60.0 | 6.21e-01 | 86.5% | 97.9% |
| 1vkeB00 | 1.20.1290.10 | Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like | 0.57 | 37.0 | 4.51e-01 | 86.5% | 100.0% |
| 1sumB01 | 1.20.58.220 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 | 0.53 | 29.0 | 3.43e-01 | 86.5% | 75.7% |
ECOD (19)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3945481 | 608.1.1.0 ↗ | alpha arrays › AhpD-like › AhpD-like › AhpD-like | 0.75 | 61.0 | 6.13e-01 | 83.9% | 84.5% |
| 3279123 | 608.1.1.1 ↗ | alpha arrays › AhpD-like › AhpD-like › AhpD-like › CMD | 0.74 | 65.0 | 6.26e-01 | 92.3% | 98.3% |
| 3308733 | 5069.1.1.56 ↗ | alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Transmembrane di-heme cytochromes › PF27518 | 0.59 | 48.0 | 4.21e-01 | 85.8% | 89.6% |
| 5030270 | 3831.1.1.0 ↗ | alpha bundles › Secreted protein of unknown function DUF1311 › Secreted protein of unknown function DUF1311 › Secreted protein of unknown function DUF1311 | 0.59 | 28.0 | 3.17e-01 | 83.9% | 58.3% |
| 3237006 | 6155.1.1.1 ↗ | alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter › MtN3_slv | 0.57 | 32.0 | 3.62e-01 | 95.5% | 70.4% |
| 4996185 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.57 | 33.0 | 4.00e-01 | 72.9% | 88.0% |
| 4188764 | 7014.1.1.1 ↗ | alpha bundles › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › BacA | 0.56 | 40.0 | 4.40e-01 | 71.6% | 93.3% |
| 3163855 | 5069.1.1.56 ↗ | alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Transmembrane di-heme cytochromes › PF27518 | 0.56 | 46.0 | 4.05e-01 | 87.7% | 90.6% |
| 4196356 | 7014.1.1.1 ↗ | alpha bundles › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › BacA | 0.55 | 39.0 | 4.28e-01 | 74.2% | 93.3% |
| 3425929 | 606.1.1.0 ↗ | alpha complex topology › Nop N-terminal domain › Nop N-terminal domain › Nop N-terminal domain | 0.54 | 36.0 | 4.03e-01 | 83.2% | 86.7% |
| 3788683 | 101.1.10.9 ↗ | alpha arrays › HTH › HTH › Cyclin-like › Cyclin | 0.54 | 39.0 | 3.43e-01 | 74.2% | 52.8% |
| 3675959 | 5059.1.1.5 ↗ | alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › UAA | 0.53 | 46.0 | 3.59e-01 | 94.8% | 92.2% |
| 4971714 | 5051.1.1.10 ↗ | alpha complex topology › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › AA_permease_2 | 0.52 | 47.0 | 3.47e-01 | 100.0% | 95.8% |
| 4081378 | 5067.1.1.2 ↗ | alpha bundles › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › SecD_SecF | 0.52 | 42.0 | 3.70e-01 | 83.9% | 90.0% |
| 3708827 | 101.1.10.0 ↗ | alpha arrays › HTH › HTH › Cyclin-like | 0.52 | 37.0 | 3.63e-01 | 73.5% | 95.9% |
| 4457750 | 3567.1.1.112 ↗ | a+b duplicates or obligate multimers › MPER trimer › MPER trimer › MPER trimer › AI-2E_transport | 0.52 | 29.0 | 3.33e-01 | 71.0% | 74.5% |
| 3608199 | 1189.1.1.0 ↗ | alpha bundles › VSG (variant surface glycoprotein) N-terminal domain and haptoglobin-hemoglobin receptor › VSG (variant surface glycoprotein) N-terminal domain and haptoglobin-hemoglobin receptor › VSG (variant surface glycoprotein) N-terminal domain and haptoglobin-hemoglobin receptor | 0.51 | 29.0 | 2.71e-01 | 82.6% | 44.9% |
| 5038482 | 2004.1.1.30 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Helicase_C | 0.50 | 37.0 | 3.15e-01 | 76.8% | 53.5% |
| 3640213 | 101.1.10.9 ↗ | alpha arrays › HTH › HTH › Cyclin-like › Cyclin | 0.50 | 37.0 | 3.50e-01 | 76.1% | 87.6% |