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LacPavin_0818_WC50_scaffold_3810_prodigal-single.1__X__X__00300

Bact-Vir

LacPavin_0818_WC50_scaffold_3810_prodigal-single.1__X__X__00300

Identity

Kingdom:
phage

Quality

89.7 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 21-68_149-183
PDB
Domain cluster: representative
CATH (44)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3kvnA02 2.40.128.130 Mainly Beta › Beta Barrel › Lipocalin › Autotransporter beta-domain 0.87 82.0 5.37e-01 100.0% 89.0%
1uynX00 2.40.128.130 Mainly Beta › Beta Barrel › Lipocalin › Autotransporter beta-domain 0.80 74.0 5.01e-01 100.0% 87.5%
2ervA00 2.40.160.20 Mainly Beta › Beta Barrel › Porin › 0.76 68.0 5.54e-01 97.6% 100.0%
4meeA00 2.40.128.130 Mainly Beta › Beta Barrel › Lipocalin › Autotransporter beta-domain 0.74 65.0 4.45e-01 100.0% 90.1%
6x1kA01 2.40.160.20 Mainly Beta › Beta Barrel › Porin › 0.72 64.0 5.69e-01 96.4% 99.1%
2f1cX00 2.40.160.40 Mainly Beta › Beta Barrel › Porin › monomeric porin ompg 0.71 66.0 4.56e-01 100.0% 96.4%
2ichA01 2.40.370.10 Mainly Beta › Beta Barrel › AttH-like fold › AttH-like domain 0.70 64.0 4.92e-01 100.0% 89.9%
2fwvA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.69 62.0 4.70e-01 98.8% 75.3%
2g16B00 2.40.155.10 Mainly Beta › Beta Barrel › Green Fluorescent Protein › Green fluorescent protein 0.69 62.0 4.96e-01 100.0% 58.9%
2pslA00 2.40.155.10 Mainly Beta › Beta Barrel › Green Fluorescent Protein › Green fluorescent protein 0.69 62.0 4.55e-01 100.0% 42.9%
6lofA00 2.40.155.10 Mainly Beta › Beta Barrel › Green Fluorescent Protein › Green fluorescent protein 0.68 62.0 4.93e-01 100.0% 59.9%
2dd7A00 2.40.155.10 Mainly Beta › Beta Barrel › Green Fluorescent Protein › Green fluorescent protein 0.66 59.0 4.40e-01 100.0% 43.9%
3bdrA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.66 59.0 4.79e-01 100.0% 91.7%
2c9jA00 2.40.155.10 Mainly Beta › Beta Barrel › Green Fluorescent Protein › Green fluorescent protein 0.66 59.0 4.36e-01 100.0% 43.7%
1uisA00 2.40.155.10 Mainly Beta › Beta Barrel › Green Fluorescent Protein › Green fluorescent protein 0.62 55.0 4.05e-01 100.0% 41.1%
2fs2B00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.62 41.0 3.42e-01 100.0% 41.3%
3lw3B00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.62 40.0 3.37e-01 100.0% 40.9%
3hm0A00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.62 41.0 3.47e-01 100.0% 44.4%
1zkiA00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.62 40.0 3.45e-01 100.0% 44.0%
1xuvA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.62 40.0 3.16e-01 86.7% 33.1%
1fm4A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.61 41.0 3.26e-01 88.0% 35.8%
4eg9A00 2.50.20.40 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › 0.61 53.0 3.81e-01 95.2% 83.1%
2wiqA00 2.40.155.10 Mainly Beta › Beta Barrel › Green Fluorescent Protein › Green fluorescent protein 0.61 54.0 3.99e-01 100.0% 44.0%
1c8uA02 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.60 39.0 3.50e-01 100.0% 48.7%
2qomB00 2.40.128.130 Mainly Beta › Beta Barrel › Lipocalin › Autotransporter beta-domain 0.59 48.0 3.28e-01 85.5% 63.2%
3cqnB00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.57 48.0 3.97e-01 96.4% 67.1%
1tw0A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.57 40.0 3.28e-01 91.6% 38.9%
2flhB00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.57 39.0 3.20e-01 89.2% 38.6%
3qlbA02 2.40.170.20 Mainly Beta › Beta Barrel › Maltoporin; Chain A › TonB-dependent receptor, beta-barrel domain 0.56 49.0 2.97e-01 95.2% 99.4%
4dkmA00 2.40.155.10 Mainly Beta › Beta Barrel › Green Fluorescent Protein › Green fluorescent protein 0.56 48.0 3.67e-01 100.0% 47.9%
5byuA00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.55 38.0 3.30e-01 100.0% 46.9%
2wstA00 2.60.90.10 Mainly Beta › Sandwich › Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) › Adenovirus pIV-related, attachment domain 0.55 48.0 3.74e-01 100.0% 45.5%
1r0uA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.55 47.0 4.01e-01 98.8% 90.8%
5fokA02 2.40.170.20 Mainly Beta › Beta Barrel › Maltoporin; Chain A › TonB-dependent receptor, beta-barrel domain 0.54 48.0 2.89e-01 96.4% 100.0%
6dw1A00 2.70.170.10 Mainly Beta › Distorted Sandwich › Acetylcholine Binding Protein; Chain: A, › Neurotransmitter-gated ion-channel ligand-binding domain 0.54 42.0 3.25e-01 89.2% 90.5%
1lg7A00 3.10.460.10 Alpha Beta › Roll › VSV matrix protein › VSV matrix protein 0.53 47.0 3.80e-01 100.0% 67.1%
1by5A02 2.40.170.20 Mainly Beta › Beta Barrel › Maltoporin; Chain A › TonB-dependent receptor, beta-barrel domain 0.53 45.0 2.74e-01 94.0% 100.0%
3p9vA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.53 38.0 3.01e-01 84.3% 39.2%
3rqbA00 2.40.160.210 Mainly Beta › Beta Barrel › Porin › Acyl-CoA thioesterase, double hotdog domain 0.53 39.0 2.74e-01 100.0% 25.0%
1xkwA02 2.40.170.20 Mainly Beta › Beta Barrel › Maltoporin; Chain A › TonB-dependent receptor, beta-barrel domain 0.52 45.0 2.74e-01 95.2% 99.8%
5da9A01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.51 39.0 2.59e-01 88.0% 19.9%
2cztA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.51 45.0 3.69e-01 100.0% 69.7%
3jafA01 2.70.170.10 Mainly Beta › Distorted Sandwich › Acetylcholine Binding Protein; Chain: A, › Neurotransmitter-gated ion-channel ligand-binding domain 0.51 40.0 3.05e-01 88.0% 88.2%
3rd7A00 2.40.160.210 Mainly Beta › Beta Barrel › Porin › Acyl-CoA thioesterase, double hotdog domain 0.51 39.0 2.75e-01 84.3% 72.7%
ECOD (34)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3964155 5084.1.1.0 beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like 0.81 75.0 5.13e-01 100.0% 96.2%
191268 5084.1.1.9 beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › PagL 0.76 68.0 5.54e-01 97.6% 100.0%
2715752 5084.1.1.0 beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like 0.72 65.0 5.65e-01 100.0% 94.4%
5033918 4252.1.1.0 beta barrels › AttH-like › AttH-like › AttH-like 0.70 64.0 4.92e-01 100.0% 86.7%
1700260 5084.1.1.13 beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › HpuA 0.69 61.0 4.17e-01 100.0% 43.4%
2834612 271.1.1.1 beta barrels › GFP-like › GFP-like › GFP-like › GFP 0.67 60.0 4.39e-01 100.0% 41.2%
3602292 504.1.1.0 a+b two layers › Bacterial protein-export protein SecB › Bacterial protein-export protein SecB › Bacterial protein-export protein SecB 0.66 49.0 4.67e-01 100.0% 67.4%
3415990 271.1.1.5 beta barrels › GFP-like › GFP-like › GFP-like › G2F 0.63 57.0 4.13e-01 100.0% 41.3%
4158607 71.1.1.5 beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › DUF576 0.61 54.0 3.84e-01 95.2% 81.7%
3285271 331.3.1.11 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Polyketide_cyc2 0.60 37.0 3.07e-01 85.5% 35.2%
4051950 331.3.1.1 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Bet_v_1 0.59 40.0 3.24e-01 88.0% 36.8%
2393529 5084.5.3.1 beta barrels › Outer membrane meander beta-barrels › Porins › Ligand-gated protein channel › TonB_dep_Rec_b-barrel 0.59 51.0 3.14e-01 98.8% 98.9%
3832622 5.1.3.67 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_1 0.58 47.0 3.19e-01 88.0% 35.2%
3508754 5084.5.1.33 beta barrels › Outer membrane meander beta-barrels › Porins › Porin › DNAJC11_beta-barrel 0.58 52.0 3.68e-01 98.8% 98.4%
3732557 331.3.1.11 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Polyketide_cyc2 0.58 38.0 3.00e-01 85.5% 32.9%
3293210 331.3.1.1 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Bet_v_1 0.58 38.0 3.12e-01 89.2% 35.6%
3831275 5.1.3.118 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 0.57 52.0 3.42e-01 100.0% 57.0%
5040875 331.3.1.11 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Polyketide_cyc2 0.57 36.0 2.93e-01 85.5% 34.2%
3703275 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.57 31.0 2.78e-01 79.5% 39.1%
5082048 4200.1.1.0 beta barrels › YmcC-like › YmcC-like › YmcC-like 0.56 48.0 3.72e-01 96.4% 95.8%
4954298 504.1.1.0 a+b two layers › Bacterial protein-export protein SecB › Bacterial protein-export protein SecB › Bacterial protein-export protein SecB 0.55 40.0 3.88e-01 100.0% 67.4%
3614986 11.2.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain 0.55 48.0 3.48e-01 100.0% 44.5%
4635990 230.2.1.0 a+b two layers › T-fold › Ribosomal protein S3-C › Ribosomal protein S3-C 0.54 41.0 3.68e-01 98.8% 59.1%
1758278 5084.5.3.1 beta barrels › Outer membrane meander beta-barrels › Porins › Ligand-gated protein channel › TonB_dep_Rec_b-barrel 0.54 46.0 2.80e-01 95.2% 99.6%
3707452 11.2.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain 0.53 46.0 3.82e-01 98.8% 96.1%
3332026 331.3.1.28 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › DUF220 0.53 36.0 2.73e-01 86.7% 30.5%
3962288 331.3.1.0 a+b two layers › TBP-like › Bet v1-like › Bet v1-like 0.53 35.0 3.08e-01 88.0% 43.8%
2780879 1172.1.1.1 beta barrels › UL131A-like › UL130 C-terminal domain › UL130 C-terminal domain › Gp_UL130 0.53 36.0 3.30e-01 83.1% 53.2%
1718522 5084.5.3.1 beta barrels › Outer membrane meander beta-barrels › Porins › Ligand-gated protein channel › TonB_dep_Rec_b-barrel 0.52 45.0 2.74e-01 95.2% 100.0%
3579209 382.1.1.0 few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like 0.51 37.0 3.34e-01 97.6% 53.3%
4888846 271.1.1.1 beta barrels › GFP-like › GFP-like › GFP-like › GFP 0.51 36.0 3.44e-01 85.5% 61.6%
3562593 4026.1.1.1 a+b three layers › a+b domain in Rap/Ran-GAP (Pfam 02145) › a+b domain in Rap/Ran-GAP (Pfam 02145) › a+b domain in Rap/Ran-GAP (Pfam 02145) › Rap-GAP_dimer 0.51 44.0 3.56e-01 95.2% 58.7%
4375009 11.12.1.1 beta sandwiches › Immunoglobulin-like beta-sandwich › Nicotinic receptor ligand binding domain-like › Nicotinic receptor ligand binding domain-like › Neur_chan_LBD 0.51 39.0 3.02e-01 88.0% 83.6%
3336175 331.3.1.11 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Polyketide_cyc2 0.51 36.0 2.78e-01 85.5% 32.6%
D2 medium residues 69-148
PDB
Domain cluster: representative
CATH (81)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3robA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.85 67.0 5.61e-01 83.7% 51.9%
3a76A01 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.83 68.0 5.52e-01 86.3% 51.1%
1uynX00 2.40.128.130 Mainly Beta › Beta Barrel › Lipocalin › Autotransporter beta-domain 0.82 75.0 5.04e-01 100.0% 34.4%
3soyA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.81 62.0 5.06e-01 81.2% 47.2%
2imjD01 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.81 62.0 5.05e-01 85.0% 45.8%
1bxwA00 2.40.160.20 Mainly Beta › Beta Barrel › Porin › 0.80 73.0 5.60e-01 100.0% 53.5%
3bb9B00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.80 59.0 5.00e-01 78.8% 49.6%
3cnxA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.79 59.0 4.88e-01 82.5% 45.7%
2f86B00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.79 59.0 5.02e-01 80.0% 49.6%
2oojA00 2.40.350.10 Mainly Beta › Beta Barrel › AOC barrel-like › SO1590-like 0.78 73.0 6.09e-01 100.0% 61.8%
3d9rB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.78 61.0 5.14e-01 83.7% 51.9%
3fidA00 2.40.128.140 Mainly Beta › Beta Barrel › Lipocalin › Outer membrane protein 0.78 72.0 4.77e-01 100.0% 39.5%
2qomB00 2.40.128.130 Mainly Beta › Beta Barrel › Lipocalin › Autotransporter beta-domain 0.78 72.0 4.86e-01 100.0% 34.6%
3njtA01 2.40.160.50 Mainly Beta › Beta Barrel › Porin › membrane protein fhac: a member of the omp85/tpsb transporter family 0.78 71.0 4.72e-01 100.0% 60.9%
1ar0A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.77 60.0 5.08e-01 87.5% 52.0%
3ef8A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.77 68.0 5.44e-01 95.0% 52.7%
4c00A04 2.40.160.50 Mainly Beta › Beta Barrel › Porin › membrane protein fhac: a member of the omp85/tpsb transporter family 0.76 68.0 4.51e-01 98.8% 27.4%
1nqfA02 2.40.170.20 Mainly Beta › Beta Barrel › Maltoporin; Chain A › TonB-dependent receptor, beta-barrel domain 0.75 65.0 4.02e-01 92.5% 22.9%
3e99A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.75 61.0 4.98e-01 95.0% 48.0%
6wilA01 2.40.160.50 Mainly Beta › Beta Barrel › Porin › membrane protein fhac: a member of the omp85/tpsb transporter family 0.75 67.0 4.35e-01 100.0% 59.5%
1jkgB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.74 59.0 4.49e-01 85.0% 39.4%
3h51A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.74 59.0 4.82e-01 87.5% 47.9%
3f14A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.74 52.0 4.66e-01 77.5% 52.7%
1wznA02 2.20.25.110 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › S-adenosyl-L-methionine-dependent methyltransferases 0.74 46.0 5.34e-01 77.5% 91.1%
2qiyA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.74 54.0 4.54e-01 86.3% 46.3%
3gwrB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.73 54.0 4.60e-01 81.2% 48.8%
3hx8A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.73 57.0 4.86e-01 83.7% 52.3%
4kz1A00 3.10.450.230 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › VirB8 protein 0.73 56.0 4.65e-01 81.2% 54.1%
1wnhA01 3.10.450.10 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.73 57.0 5.30e-01 92.5% 67.0%
1jkgA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.72 60.0 4.92e-01 88.7% 52.5%
3gp6A00 2.40.160.20 Mainly Beta › Beta Barrel › Porin › 0.72 65.0 5.22e-01 100.0% 52.3%
3vy8X00 2.40.160.10 Mainly Beta › Beta Barrel › Porin › Porin 0.72 64.0 4.17e-01 97.5% 40.5%
3dm8A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.72 59.0 4.89e-01 87.5% 52.6%
2bmoB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.71 64.0 4.74e-01 97.5% 41.8%
2b1xB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.71 64.0 4.95e-01 97.5% 47.9%
1uliB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.71 64.0 4.86e-01 97.5% 45.8%
3er7B00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.71 55.0 4.68e-01 87.5% 52.8%
3b8lA01 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.71 61.0 5.00e-01 95.0% 53.2%
3d2lA02 2.20.25.110 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › S-adenosyl-L-methionine-dependent methyltransferases 0.71 47.0 5.27e-01 81.2% 87.3%
2gr7A00 3.30.1300.30 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › GSPII I/J protein-like 0.70 56.0 5.20e-01 100.0% 67.3%
2cc3A00 3.10.450.230 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › VirB8 protein 0.70 58.0 4.70e-01 88.7% 52.8%
3ff0A01 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.70 58.0 4.78e-01 90.0% 54.6%
3fsdA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.70 55.0 4.75e-01 83.7% 56.2%
3jtyB01 2.40.160.10 Mainly Beta › Beta Barrel › Porin › Porin 0.70 61.0 3.92e-01 97.5% 24.0%
2pfcA00 3.10.129.30 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Rv0098, thioesterase-like hot dog domain 0.70 62.0 4.86e-01 96.2% 83.7%
3zpmA00 3.15.10.10 Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 1 › Bactericidal permeability-increasing protein; domain 1 0.69 60.0 4.51e-01 100.0% 52.6%
1bt9A00 2.40.160.10 Mainly Beta › Beta Barrel › Porin › Porin 0.69 61.0 4.04e-01 100.0% 78.8%
3fhhA02 2.40.170.20 Mainly Beta › Beta Barrel › Maltoporin; Chain A › TonB-dependent receptor, beta-barrel domain 0.69 60.0 3.70e-01 97.5% 18.9%
1tk1A00 3.40.1500.10 Alpha Beta › 3-Layer(aba) Sandwich › oxygen-dependent coproporphyrinogen oxidase › Coproporphyrinogen III oxidase, aerobic 0.69 58.0 4.21e-01 92.5% 41.6%
2rfrA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.69 56.0 4.47e-01 93.8% 45.5%
3f7sA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.69 58.0 4.73e-01 92.5% 51.4%
5i97C00 3.10.450.230 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › VirB8 protein 0.69 51.0 4.30e-01 80.0% 55.5%
4aipC02 2.40.170.20 Mainly Beta › Beta Barrel › Maltoporin; Chain A › TonB-dependent receptor, beta-barrel domain 0.68 59.0 3.55e-01 95.0% 21.3%
1a0sP00 2.40.170.10 Mainly Beta › Beta Barrel › Maltoporin; Chain A › Porin, LamB type 0.68 62.0 3.88e-01 100.0% 80.1%
2w16A03 2.40.170.20 Mainly Beta › Beta Barrel › Maltoporin; Chain A › TonB-dependent receptor, beta-barrel domain 0.68 59.0 3.50e-01 93.8% 25.4%
1cbyA00 3.40.198.10 Alpha Beta › 3-Layer(aba) Sandwich › Delta-endotoxin CytB › Delta-endotoxin CytB-like 0.68 54.0 3.88e-01 86.3% 43.2%
3aa0B02 3.90.1150.210 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › F-actin capping protein, beta subunit 0.68 59.0 4.77e-01 97.5% 58.1%
2w4yA00 2.40.160.220 Mainly Beta › Beta Barrel › Porin › 0.67 55.0 4.80e-01 88.7% 65.6%
3cu3A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.67 55.0 4.35e-01 88.7% 45.1%
4akrA02 3.90.1150.210 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › F-actin capping protein, beta subunit 0.67 59.0 4.78e-01 96.2% 56.5%
6yfiB01 3.30.380.10 Alpha Beta › 2-Layer Sandwich › MS2 Viral Coat Protein › MS2 Viral Coat Protein 0.66 52.0 4.39e-01 85.0% 52.6%
1b7eA01 3.90.350.10 Alpha Beta › Alpha-Beta Complex › Transposase Inhibitor Protein From Tn5; Chain A, domain 1 › Transposase Inhibitor Protein From Tn5; Chain A, domain 1 0.65 47.0 3.31e-01 76.2% 25.2%
3rgaA01 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.64 52.0 4.47e-01 90.0% 54.9%
1fepA02 2.40.170.20 Mainly Beta › Beta Barrel › Maltoporin; Chain A › TonB-dependent receptor, beta-barrel domain 0.64 57.0 3.44e-01 100.0% 74.6%
4k7rA02 2.20.200.10 Mainly Beta › Single Sheet › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) 0.64 48.0 4.88e-01 78.8% 85.7%
2gvhB02 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.62 50.0 4.40e-01 86.3% 88.9%
2ynkA00 2.40.160.130 Mainly Beta › Beta Barrel › Porin › Capsule assembly protein Wzi 0.61 55.0 3.42e-01 100.0% 31.1%
2lyxA00 3.10.450.390 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Protein of unknown function DUF3889 0.61 42.0 4.10e-01 85.0% 65.5%
4r7kA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.61 54.0 4.26e-01 100.0% 49.4%
7a0hA02 3.90.1150.210 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › F-actin capping protein, beta subunit 0.61 52.0 4.09e-01 96.2% 60.3%
4ok4A02 2.70.98.70 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.59 52.0 3.41e-01 100.0% 54.3%
1ut7B01 2.170.150.80 Mainly Beta › Beta Complex › Metal Binding Protein, Guanine Nucleotide Exchange Factor; Chain A › NAC domain 0.58 43.0 3.75e-01 85.0% 51.2%
4n4rB00 3.30.160.150 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Lipoprotein like domain 0.57 45.0 3.76e-01 88.7% 84.1%
6hswA01 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.56 49.0 3.17e-01 100.0% 38.0%
2ichA01 2.40.370.10 Mainly Beta › Beta Barrel › AttH-like fold › AttH-like domain 0.55 47.0 3.72e-01 100.0% 60.3%
3qtdA01 3.30.2290.10 Alpha Beta › 2-Layer Sandwich › PmbA/TldD fold › PmbA/TldD superfamily 0.54 45.0 3.36e-01 95.0% 69.7%
2carB00 3.90.950.10 Alpha Beta › Alpha-Beta Complex › Maf protein › 0.54 46.0 3.49e-01 92.5% 71.1%
1fx3B00 3.10.420.10 Alpha Beta › Roll › Bacterial Protein-export protein SecB › SecB-like 0.53 44.0 3.80e-01 100.0% 65.8%
3cygA01 3.30.565.40 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Fervidobacterium nodosum Rt17-B1 like 0.53 40.0 3.58e-01 82.5% 89.9%
1h4uA00 2.40.155.10 Mainly Beta › Beta Barrel › Green Fluorescent Protein › Green fluorescent protein 0.53 46.0 3.33e-01 100.0% 65.7%
2r76A00 3.30.160.150 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Lipoprotein like domain 0.53 42.0 3.64e-01 90.0% 92.4%
ECOD (76)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4873102 5084.1.1.0 beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like 0.89 73.0 6.09e-01 100.0% 53.1%
4136508 5084.3.1.1 beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter › Autotransporter 0.87 81.0 5.21e-01 100.0% 37.3%
4417262 5084.1.1.0 beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like 0.87 82.0 6.24e-01 100.0% 57.5%
4571005 5084.5.1.66 beta barrels › Outer membrane meander beta-barrels › Porins › Porin › DUF2490 0.85 79.0 5.75e-01 100.0% 43.3%
3838829 5084.1.1.15 beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › HP_OMP 0.83 77.0 5.71e-01 100.0% 56.2%
3967564 5084.5.1.5 beta barrels › Outer membrane meander beta-barrels › Porins › Porin › ShlB 0.83 76.0 4.79e-01 100.0% 58.7%
5072383 243.1.1.26 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_4 0.82 66.0 5.32e-01 85.0% 46.9%
3839285 5084.1.1.0 beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like 0.82 76.0 5.64e-01 100.0% 57.3%
4116729 5084.1.1.6 beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › OprF 0.82 75.0 5.77e-01 100.0% 56.5%
3941832 5084.5.1.5 beta barrels › Outer membrane meander beta-barrels › Porins › Porin › ShlB 0.82 75.0 4.72e-01 100.0% 61.6%
3405242 5084.5.1.37 beta barrels › Outer membrane meander beta-barrels › Porins › Porin › Attacin_N, Attacin_C 0.80 69.0 5.19e-01 100.0% 40.4%
3837948 5084.1.1.15 beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › HP_OMP 0.80 73.0 5.48e-01 100.0% 56.3%
3848773 243.1.1.13 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › CaMKII_AD 0.80 64.0 4.97e-01 95.0% 41.2%
3838398 5084.1.1.15 beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › HP_OMP 0.80 72.0 5.51e-01 100.0% 52.2%
3964265 5084.1.1.43 beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › Autotransporter 0.80 70.0 5.62e-01 93.8% 75.2%
4885978 5084.5.1.2 beta barrels › Outer membrane meander beta-barrels › Porins › Porin › Omp85 0.80 72.0 4.69e-01 98.8% 28.2%
3504070 243.1.1.13 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › CaMKII_AD 0.80 64.0 5.15e-01 95.0% 46.9%
3980621 5084.5.1.8 beta barrels › Outer membrane meander beta-barrels › Porins › Porin › KdgM 0.79 74.0 5.27e-01 100.0% 42.8%
3742156 5084.5.1.2 beta barrels › Outer membrane meander beta-barrels › Porins › Porin › Omp85 0.79 71.0 4.58e-01 97.5% 28.1%
4174055 5084.1.1.0 beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like 0.79 73.0 5.46e-01 100.0% 62.5%
4662377 5084.5.4.5 beta barrels › Outer membrane meander beta-barrels › Porins › Outer membrane protein transport protein › SlipAM 0.79 72.0 4.80e-01 100.0% 27.5%
3962910 243.1.1.0 a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.79 64.0 5.29e-01 86.3% 51.1%
3284019 243.1.1.0 a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.78 64.0 5.30e-01 87.5% 54.8%
3164124 5084.1.1.4 beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › Opacity 0.78 67.0 5.73e-01 91.3% 66.7%
3870002 883.1.1.15 a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › LBP_BPI_CETP+LBP_BPI_CETP_C 0.78 70.0 4.37e-01 100.0% 29.2%
3951229 243.1.1.77 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › PF29518 0.78 59.0 4.75e-01 80.0% 43.5%
3395729 331.3.1.0 a+b two layers › TBP-like › Bet v1-like › Bet v1-like 0.78 70.0 5.50e-01 97.5% 49.4%
3571697 883.1.1.1 a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › LBP_BPI_CETP 0.77 70.0 5.22e-01 100.0% 56.9%
5018057 9.13.1.0 beta barrels › Lipocalins/Streptavidin › AOC barrel-like › AOC barrel-like 0.77 71.0 6.06e-01 100.0% 64.2%
3721835 243.1.1.0 a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.77 66.0 5.25e-01 92.5% 48.4%
3725346 243.1.1.25 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_3 0.77 60.0 5.09e-01 83.7% 60.0%
4222629 5084.1.1.0 beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like 0.76 68.0 5.49e-01 100.0% 63.2%
1312446 5084.5.1.2 beta barrels › Outer membrane meander beta-barrels › Porins › Porin › Omp85 0.76 68.0 4.51e-01 98.8% 27.4%
3950026 243.1.1.0 a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.75 57.0 4.80e-01 93.8% 48.5%
3859609 243.1.1.40 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › NXF_NTF2 0.75 60.0 4.46e-01 85.0% 40.5%
3970343 5084.5.1.24 beta barrels › Outer membrane meander beta-barrels › Porins › Porin › Gcw_chp 0.75 65.0 4.67e-01 100.0% 34.9%
3574877 5084.5.1.0 beta barrels › Outer membrane meander beta-barrels › Porins › Porin 0.75 57.0 3.75e-01 96.2% 20.6%
3701306 331.3.1.17 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › VASt 0.74 66.0 4.79e-01 97.5% 39.0%
3479831 243.1.1.0 a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.73 64.0 5.00e-01 95.0% 53.9%
4315977 5084.5.1.37 beta barrels › Outer membrane meander beta-barrels › Porins › Porin › Attacin_N, Attacin_C 0.73 62.0 4.32e-01 100.0% 28.5%
4664957 5084.5.2.0 beta barrels › Outer membrane meander beta-barrels › Porins › Maltoporin-like 0.73 65.0 4.10e-01 97.5% 23.9%
3581448 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.73 57.0 5.09e-01 85.0% 60.0%
2033779 243.1.1.28 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › DUF4440 0.73 58.0 4.92e-01 90.0% 53.5%
3965708 5084.5.4.5 beta barrels › Outer membrane meander beta-barrels › Porins › Outer membrane protein transport protein › SlipAM 0.72 65.0 4.62e-01 100.0% 35.4%
4009987 5084.8.1.0 beta barrels › Outer membrane meander beta-barrels › Usher PapC translocation pore › Usher PapC translocation pore 0.72 58.0 3.64e-01 96.2% 16.4%
4008277 5084.5.1.62 beta barrels › Outer membrane meander beta-barrels › Porins › Porin › PF27458 0.72 65.0 4.30e-01 100.0% 26.6%
4664562 243.1.1.1 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › Ring_hydroxyl_B 0.71 64.0 4.89e-01 97.5% 46.3%
None 0.71 63.0 4.15e-01 97.5% 49.1%
3942050 5084.5.2.1 beta barrels › Outer membrane meander beta-barrels › Porins › Maltoporin-like › LamB 0.71 65.0 4.33e-01 100.0% 55.4%
3941401 5084.5.2.1 beta barrels › Outer membrane meander beta-barrels › Porins › Maltoporin-like › LamB 0.71 65.0 4.07e-01 100.0% 89.1%
3471294 243.1.1.2 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › NTF2 0.70 55.0 4.62e-01 85.0% 51.2%
4533056 5084.5.2.1 beta barrels › Outer membrane meander beta-barrels › Porins › Maltoporin-like › LamB 0.69 63.0 3.96e-01 100.0% 42.2%
4157765 883.1.1.0 a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like 0.69 60.0 4.66e-01 100.0% 63.2%
3981154 5084.8.1.1 beta barrels › Outer membrane meander beta-barrels › Usher PapC translocation pore › Usher PapC translocation pore › Usher 0.69 53.0 3.31e-01 98.8% 15.2%
3173251 4051.1.1.1 a+b two layers › a+b domain in Capz › a+b domain in Capz › a+b domain in Capz › F_actin_cap_B 0.69 61.0 4.73e-01 97.5% 55.3%
3933957 4051.1.1.1 a+b two layers › a+b domain in Capz › a+b domain in Capz › a+b domain in Capz › F_actin_cap_B 0.69 61.0 4.82e-01 97.5% 55.0%
1760802 5084.5.3.1 beta barrels › Outer membrane meander beta-barrels › Porins › Ligand-gated protein channel › TonB_dep_Rec_b-barrel 0.69 60.0 3.67e-01 95.0% 16.7%
4823574 4030.1.1.1 alpha bundles › alpha-helical domain in subunits of heterodimeric actin filament capping protein Capz › alpha-helical domain in subunits of heterodimeric actin filament capping protein Capz › alpha-helical domain in subunits of heterodimeric actin filament capping protein Capz › F_actin_cap_B 0.68 61.0 4.83e-01 97.5% 57.7%
3461988 5.1.3.54 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › DUF1668 0.68 53.0 3.51e-01 86.3% 20.0%
5063899 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.68 50.0 3.58e-01 98.8% 28.2%
3947597 5084.5.3.1 beta barrels › Outer membrane meander beta-barrels › Porins › Ligand-gated protein channel › TonB_dep_Rec_b-barrel 0.68 58.0 3.88e-01 93.8% 28.0%
3593584 331.3.1.17 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › VASt 0.68 61.0 4.18e-01 100.0% 31.6%
4025435 4051.1.1.2 a+b two layers › a+b domain in Capz › a+b domain in Capz › a+b domain in Capz › F-actin_cap_A 0.67 59.0 4.39e-01 95.0% 55.3%
3613163 1116.1.1.0 a+b two layers › Polycystin-mucolipin domain › Polycystin-mucolipin domain › Polycystin-mucolipin domain 0.67 50.0 3.84e-01 82.5% 95.0%
4668983 4051.1.1.0 a+b two layers › a+b domain in Capz › a+b domain in Capz › a+b domain in Capz 0.67 59.0 4.69e-01 97.5% 55.0%
4880357 5084.8.1.1 beta barrels › Outer membrane meander beta-barrels › Usher PapC translocation pore › Usher PapC translocation pore › Usher 0.66 51.0 4.34e-01 93.8% 50.0%
3359635 274.1.1.44 a+b two layers › Pili subunits › Pili subunits › Pili subunits › DUF7804 0.66 51.0 4.64e-01 85.0% 68.2%
3854926 883.1.1.1 a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › LBP_BPI_CETP 0.64 56.0 3.62e-01 100.0% 26.9%
3718960 4051.1.1.2 a+b two layers › a+b domain in Capz › a+b domain in Capz › a+b domain in Capz › F-actin_cap_A 0.63 54.0 3.93e-01 92.5% 46.2%
5037445 2003.1.5.81 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 0.60 55.0 3.79e-01 100.0% 76.2%
3702051 1116.1.1.0 a+b two layers › Polycystin-mucolipin domain › Polycystin-mucolipin domain › Polycystin-mucolipin domain 0.59 47.0 3.58e-01 88.7% 98.5%
3276558 12.3.1.0 beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich 0.59 48.0 3.31e-01 92.5% 58.2%
3966796 512.1.1.3 a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_1st, PmbA_TldD_2nd 0.55 45.0 3.33e-01 93.8% 70.7%
3890886 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.54 43.0 4.40e-01 90.0% 90.0%
4940463 274.1.1.0 a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.54 47.0 4.03e-01 100.0% 67.4%
3286883 2003.1.5.67 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_12 0.53 45.0 3.29e-01 98.8% 80.8%