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LacPavin_0818_WC50_scaffold_71530_prodigal-single.1__X__X__00539
Bact-VirLacPavin_0818_WC50_scaffold_71530_prodigal-single.1__X__X__00539
Identity
- Kingdom:
- phage
Quality
59.4
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 143-260
D2
high
residues 271-435
Domain cluster:
rep: ALT_09252017_20_scaffold_111_prodigal-single.1__X__X__00163__D1-54_113-174
CATH (3)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2a6hC05 | 2.40.50.100 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain | 0.53 | 22.0 | 3.02e-01 | 72.1% | 77.3% |
| 3dfeA00 | 3.30.70.120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.52 | 27.0 | 3.62e-01 | 87.3% | 98.8% |
| 1tq5A01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.50 | 25.0 | 3.02e-01 | 86.1% | 69.4% |
ECOD (2)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3533042 | 304.5.1.0 ↗ | a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like | 0.53 | 29.0 | 3.63e-01 | 89.7% | 88.4% |
| 3276741 | 7509.1.1.0 ↗ | a/b three-layered sandwiches › NIF3 (NGG1p interacting factor 3)-like › NIF3 (NGG1p interacting factor 3)-like › NIF3 (NGG1p interacting factor 3)-like | 0.51 | 25.0 | 3.40e-01 | 89.1% | 98.7% |
D3
high
residues 507-643
Domain cluster:
representative
CATH (10)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1zpyA00 | 6.10.140.1960 | Special › Helix non-globular › Helix Hairpins › | 0.65 | 33.0 | 4.03e-01 | 94.2% | 73.6% |
| 3vhlA02 | 1.20.58.740 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › DOCK DHR2 domain, lobe C | 0.59 | 47.0 | 5.01e-01 | 93.4% | 97.5% |
| 3lbxB01 | 1.20.58.60 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.56 | 38.0 | 4.24e-01 | 75.2% | 88.8% |
| 2ynqB00 | 1.25.40.680 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Type VII secretion system EssB, C-terminal-like domain | 0.54 | 31.0 | 3.01e-01 | 92.0% | 47.7% |
| 2ckoA02 | 3.90.1200.10 | Alpha Beta › Alpha-Beta Complex › Aminoglycoside 3'-phosphotransferase; Chain: A, domain 2 › Aminoglycoside phosphotransferase (APH), C-terminal lobe | 0.54 | 47.0 | 3.82e-01 | 97.1% | 89.9% |
| 4id0A02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.53 | 39.0 | 4.21e-01 | 91.2% | 93.8% |
| 2rldA00 | 1.20.1440.60 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 23S rRNA-intervening sequence | 0.52 | 37.0 | 4.04e-01 | 98.5% | 87.7% |
| 7zxkC01 | 1.20.1250.10 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › | 0.52 | 37.0 | 3.63e-01 | 73.7% | 74.0% |
| 1nw1A02 | 3.90.1200.10 | Alpha Beta › Alpha-Beta Complex › Aminoglycoside 3'-phosphotransferase; Chain: A, domain 2 › Aminoglycoside phosphotransferase (APH), C-terminal lobe | 0.51 | 43.0 | 3.54e-01 | 94.2% | 86.6% |
| 5fmnA00 | 1.20.58.1000 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Metal-sensitive repressor, helix protomer | 0.51 | 31.0 | 3.84e-01 | 88.3% | 97.7% |
ECOD (9)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3819774 | 603.1.1.0 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins | 0.61 | 41.0 | 4.78e-01 | 70.8% | 94.0% |
| 3934153 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.61 | 35.0 | 4.14e-01 | 74.5% | 82.1% |
| 3400202 | 174.1.1.0 ↗ | few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain | 0.58 | 33.0 | 3.39e-01 | 78.1% | 57.0% |
| 3586169 | 174.1.1.0 ↗ | few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain | 0.57 | 36.0 | 3.64e-01 | 76.6% | 61.4% |
| 3570651 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.57 | 39.0 | 4.49e-01 | 70.1% | 98.9% |
| 3216709 | 3922.1.1.0 ↗ | alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 | 0.56 | 37.0 | 4.38e-01 | 72.3% | 100.0% |
| 3596083 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.55 | 45.0 | 4.51e-01 | 86.9% | 91.4% |
| 4022845 | 1065.1.1.1 ↗ | alpha bundles › SPX domain › SPX domain › SPX domain › SPX | 0.51 | 44.0 | 3.77e-01 | 92.7% | 80.0% |
| 3670976 | 603.1.1.5 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins › Syntaxin-6_N | 0.51 | 39.0 | 3.90e-01 | 81.8% | 79.3% |
D4
medium
residues 31-121
D5
medium
residues 440-506
Domain cluster:
representative
CATH (18)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4oseB00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.70 | 45.0 | 2.97e-01 | 79.1% | 15.5% |
| 1c0gA03 | 3.90.640.10 | Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › ATPase, substrate binding domain, subdomain 4 | 0.62 | 50.0 | 4.51e-01 | 88.1% | 97.8% |
| 4griA04 | 1.10.8.70 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Glutamate-tRNA synthetase, class I, anticodon-binding domain 1 | 0.60 | 39.0 | 4.25e-01 | 77.6% | 84.9% |
| 3a1yA00 | 1.10.10.1410 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.58 | 35.0 | 3.68e-01 | 95.5% | 67.2% |
| 4uqfG01 | 1.10.286.10 | Mainly Alpha › Orthogonal Bundle › GTP Cyclohydrolase I; Chain A, domain 1 › GTP cyclohydrolase I, N-terminal domain | 0.56 | 37.0 | 4.07e-01 | 70.1% | 86.5% |
| 2zb9A02 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.56 | 44.0 | 3.51e-01 | 86.6% | 81.9% |
| 6qdjA01 | 1.20.58.60 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.55 | 40.0 | 3.89e-01 | 79.1% | 92.1% |
| 2gwlA00 | 3.90.176.10 | Alpha Beta › Alpha-Beta Complex › Toxin ADP-ribosyltransferase; Chain A, domain 1 › Toxin ADP-ribosyltransferase; Chain A, domain 1 | 0.55 | 38.0 | 2.76e-01 | 73.1% | 68.0% |
| 4ag6A02 | 1.10.8.730 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.54 | 38.0 | 3.32e-01 | 79.1% | 45.5% |
| 4b3hA03 | 1.10.1040.50 | Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › | 0.54 | 41.0 | 3.00e-01 | 85.1% | 82.5% |
| 2zj2A03 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.53 | 39.0 | 3.67e-01 | 79.1% | 63.1% |
| 2m4eA00 | 1.20.120.1930 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Uncharacterised protein PF16691 family | 0.53 | 41.0 | 3.82e-01 | 86.6% | 93.0% |
| 4mspB02 | 1.10.238.10 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand | 0.53 | 39.0 | 3.81e-01 | 80.6% | 72.0% |
| 2ph7A01 | 1.10.3400.10 | Mainly Alpha › Orthogonal Bundle › af_2093 domain like fold › af_2093 domain like | 0.53 | 42.0 | 3.61e-01 | 95.5% | 66.9% |
| 4qiwB04 | 3.90.1110.10 | Alpha Beta › Alpha-Beta Complex › Dna-directed Rna Polymerase Ii 140kd Polypeptide; Chain: B; domain 3 › RNA polymerase Rpb2, domain 2 | 0.53 | 39.0 | 3.00e-01 | 80.6% | 54.6% |
| 7jiuA03 | 3.30.1010.10 | Alpha Beta › 2-Layer Sandwich › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 4 › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 4 | 0.52 | 40.0 | 3.22e-01 | 83.6% | 51.5% |
| 1ac5A00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.52 | 44.0 | 2.73e-01 | 100.0% | 25.7% |
| 5mmiJ02 | 1.10.10.250 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Ribosomal protein L11/L12, C-terminal domain | 0.51 | 40.0 | 4.05e-01 | 95.5% | 84.1% |
ECOD (21)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3432076 | 101.1.2.386 ↗ | alpha arrays › HTH › HTH › winged helix domain › WH_DRP | 0.70 | 52.0 | 4.39e-01 | 79.1% | 58.2% |
| 3456829 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.69 | 51.0 | 4.40e-01 | 79.1% | 51.4% |
| 3450461 | 101.1.2.386 ↗ | alpha arrays › HTH › HTH › winged helix domain › WH_DRP | 0.67 | 52.0 | 4.09e-01 | 85.1% | 67.6% |
| 3371657 | 101.1.2.386 ↗ | alpha arrays › HTH › HTH › winged helix domain › WH_DRP | 0.66 | 48.0 | 4.44e-01 | 79.1% | 61.1% |
| 4458447 | 148.1.3.21 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_4 | 0.65 | 39.0 | 3.85e-01 | 80.6% | 57.1% |
| 3699870 | 190.1.1.0 ↗ | alpha arrays › HMG-box-like › HMG-box › HMG-box | 0.63 | 46.0 | 4.95e-01 | 85.1% | 96.4% |
| 3419147 | 190.1.1.1 ↗ | alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box | 0.62 | 45.0 | 4.09e-01 | 82.1% | 56.7% |
| 5024095 | 1.1.5.17 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › DUF447_N | 0.58 | 44.0 | 3.08e-01 | 83.6% | 71.7% |
| 4405015 | 152.1.2.0 ↗ | alpha arrays › RPB6/omega subunit-like › RPB6/omega subunit-like › RNA polymerase omega subunit | 0.56 | 36.0 | 3.81e-01 | 73.1% | 73.3% |
| 1699700 | 2498.1.1.25 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M6 | 0.55 | 48.0 | 2.96e-01 | 97.0% | 89.7% |
| 3930155 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.54 | 35.0 | 3.02e-01 | 80.6% | 39.1% |
| 5037640 | 304.51.1.0 ↗ | a+b two layers › Alpha-beta plaits › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR transcript (pre-crRNA) processing endoribonuclease-related | 0.54 | 41.0 | 3.02e-01 | 88.1% | 86.2% |
| 3518548 | 2004.1.1.80 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Cytidylate_kin | 0.53 | 39.0 | 2.98e-01 | 80.6% | 34.9% |
| 4941477 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.53 | 36.0 | 3.21e-01 | 71.6% | 49.0% |
| 3797571 | 2008.3.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Eukaryotic RPB5 N-terminal domain › Eukaryotic RPB5 N-terminal domain | 0.51 | 40.0 | 3.31e-01 | 89.6% | 98.5% |
| 3364656 | 109.4.1.759 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Dymeclin | 0.51 | 38.0 | 2.62e-01 | 80.6% | 54.4% |
| 4947125 | 832.1.1.2 ↗ | a+b three layers › N-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1 › N-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1 › N-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1 › eRF1_2 | 0.51 | 36.0 | 2.91e-01 | 76.1% | 58.6% |
| 4963254 | 1076.1.1.1 ↗ | alpha bundles › Intramembrane protease Rce1-related › Intramembrane protease Rce1-related › Intramembrane protease Rce1-related › Rce1-like | 0.51 | 38.0 | 2.77e-01 | 85.1% | 90.4% |
| 4021185 | 101.1.17.0 ↗ | alpha arrays › HTH › HTH › FF domain | 0.51 | 34.0 | 2.75e-01 | 98.5% | 32.9% |
| None | — | 0.51 | 38.0 | 2.57e-01 | 86.6% | 81.3% | |
| 3742656 | 190.1.1.1 ↗ | alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box | 0.50 | 43.0 | 3.72e-01 | 100.0% | 76.4% |