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LacPavin_0818_WC50_scaffold_71530_prodigal-single.1__X__X__00553

Bact-Vir

LacPavin_0818_WC50_scaffold_71530_prodigal-single.1__X__X__00553

Identity

Kingdom:
phage

Quality

82.9 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 19-90
PDB
CATH (45)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2gu3A01 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.73 55.0 5.72e-01 95.8% 90.8%
2g30A02 3.30.310.10 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein 0.68 51.0 4.32e-01 95.8% 49.1%
3cnvA01 3.40.1410.10 Alpha Beta › 3-Layer(aba) Sandwich › Chorismate lyase › Chorismate lyase-like 0.67 51.0 3.96e-01 81.9% 90.3%
3er7B00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.66 58.0 4.85e-01 97.2% 93.5%
7c5wA01 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.66 59.0 4.61e-01 98.6% 99.3%
3ecfA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.66 59.0 4.86e-01 100.0% 83.6%
5evhA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.65 58.0 4.87e-01 100.0% 87.6%
3lyrA00 2.60.40.3180 Mainly Beta › Sandwich › Immunoglobulin-like › Transcription factor COE1, DNA-binding domain 0.65 56.0 4.00e-01 95.8% 69.2%
5ih0A01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.64 57.0 5.24e-01 98.6% 100.0%
4r1kB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.64 56.0 4.57e-01 100.0% 85.3%
3plsA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.63 47.0 4.22e-01 80.6% 85.6%
3fh1A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.63 56.0 4.74e-01 100.0% 89.3%
3k7cA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.63 55.0 4.80e-01 95.8% 100.0%
3riqA00 2.160.20.20 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › 0.63 35.0 2.06e-01 73.6% 7.2%
1uliB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.62 53.0 4.08e-01 98.6% 85.9%
6ya6A01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.62 56.0 5.06e-01 100.0% 98.0%
3doaA01 2.30.310.10 Mainly Beta › Roll › ibrinogen binding protein from staphylococcus aureus fold › ibrinogen binding protein from staphylococcus aureus domain 0.62 55.0 4.31e-01 100.0% 77.1%
3lygA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.62 54.0 4.63e-01 100.0% 91.7%
2g8sB00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.60 53.0 3.43e-01 100.0% 32.0%
2qpvA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.60 43.0 3.56e-01 95.8% 41.7%
3n8bA00 3.10.450.700 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.60 41.0 4.07e-01 81.9% 68.0%
3f14A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.59 51.0 4.46e-01 100.0% 98.2%
5tkyA04 2.60.34.10 Mainly Beta › Sandwich › Substrate Binding Domain Of DNAk; Chain A, domain 1 › Substrate Binding Domain Of DNAk; Chain A, domain 1 0.59 41.0 3.60e-01 75.0% 69.8%
6ruiB04 3.90.1110.10 Alpha Beta › Alpha-Beta Complex › Dna-directed Rna Polymerase Ii 140kd Polypeptide; Chain: B; domain 3 › RNA polymerase Rpb2, domain 2 0.58 39.0 3.04e-01 73.6% 28.6%
2ldkA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.58 45.0 3.53e-01 97.2% 37.2%
3ec7A02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.57 49.0 4.23e-01 100.0% 63.1%
1bywA00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.57 48.0 4.15e-01 91.7% 85.5%
1xuvA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.56 46.0 3.61e-01 97.2% 40.5%
1h91A00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.56 49.0 3.70e-01 100.0% 41.7%
3ebtA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.56 46.0 3.97e-01 100.0% 88.5%
5wceA03 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.56 40.0 3.51e-01 79.2% 95.8%
2lf2A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.54 44.0 3.41e-01 97.2% 37.7%
1xfsA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.54 45.0 3.54e-01 93.1% 61.7%
3s5wA00 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.54 42.0 2.69e-01 88.9% 39.0%
1x99A00 2.60.270.20 Mainly Beta › Sandwich › Mutm (Fpg) Protein; Chain: A, domain 2 › Cytolysin/lectin 0.54 47.0 3.77e-01 98.6% 55.2%
2mj7A00 3.30.310.10 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein 0.54 41.0 3.38e-01 97.2% 43.3%
3jvgA01 3.30.500.10 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like 0.53 37.0 2.87e-01 73.6% 68.2%
3oloA00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.53 46.0 3.96e-01 94.4% 78.4%
3rcyB01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.53 38.0 3.13e-01 77.8% 70.2%
2cztA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.51 43.0 3.48e-01 98.6% 48.4%
3rbyA01 2.40.128.320 Mainly Beta › Beta Barrel › Lipocalin › Protein HRI1, N-terminal domain 0.51 41.0 3.29e-01 90.3% 92.0%
1lc0A02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.51 43.0 3.54e-01 100.0% 51.0%
4emoC00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.51 40.0 3.53e-01 93.1% 56.0%
3bc9A01 2.60.40.1220 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 40.0 3.73e-01 87.5% 84.9%
3bm4A00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.50 44.0 3.24e-01 98.6% 73.1%
ECOD (51)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4957055 708.1.1.0 beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain 0.76 60.0 5.93e-01 90.3% 80.0%
3244230 227.1.1.11 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Hus1 0.73 50.0 3.90e-01 70.8% 88.7%
4311344 4252.1.1.13 beta barrels › AttH-like › AttH-like › AttH-like › PF27123 0.70 49.0 4.17e-01 91.7% 46.1%
3931614 331.9.1.2 a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain › B2-adapt-app_C 0.70 52.0 4.43e-01 95.8% 49.6%
4026208 331.9.1.2 a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain › B2-adapt-app_C 0.68 52.0 4.43e-01 95.8% 50.4%
4960511 206.1.1.9 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › RIO1 0.68 61.0 4.10e-01 100.0% 48.9%
4330226 4252.1.1.13 beta barrels › AttH-like › AttH-like › AttH-like › PF27123 0.68 48.0 4.15e-01 91.7% 48.2%
4339414 243.3.1.1 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › Cystatin 0.68 62.0 5.51e-01 100.0% 85.0%
3437773 243.3.1.19 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › DUF3615 0.67 60.0 5.10e-01 98.6% 70.4%
5081827 206.1.1.9 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › RIO1 0.67 59.0 3.93e-01 98.6% 48.0%
4031480 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.66 58.0 5.41e-01 100.0% 78.9%
5025077 3414.1.1.0 beta sandwiches › A putative surface protein › A putative surface protein › A putative surface protein 0.66 49.0 5.29e-01 88.9% 95.0%
3947188 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.65 60.0 5.22e-01 100.0% 78.1%
3703242 331.9.1.0 a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain 0.65 50.0 4.21e-01 95.8% 49.2%
3728260 206.1.1.11 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › APH 0.65 57.0 3.68e-01 100.0% 32.2%
3797734 11.1.5.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f 0.65 55.0 4.04e-01 95.8% 76.0%
3670765 11.1.1.53 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DOMON 0.63 41.0 3.08e-01 75.0% 27.6%
136977 243.1.1.20 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › DUF4878 0.63 55.0 4.80e-01 95.8% 100.0%
4000387 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.63 42.0 3.68e-01 76.4% 46.7%
4199940 243.3.1.75 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › DUF6504 0.63 52.0 4.64e-01 91.7% 75.7%
3214491 11.1.1.53 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DOMON 0.62 42.0 3.21e-01 76.4% 31.2%
3703043 5.1.4.597 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › BNR_3 0.62 54.0 3.63e-01 100.0% 40.3%
3923810 1.1.1.0 beta barrels › cradle loop barrel › RIFT-related › acid protease 0.62 46.0 3.99e-01 80.6% 83.5%
3926090 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.61 54.0 3.32e-01 97.2% 23.1%
3728259 4252.1.1.12 beta barrels › AttH-like › AttH-like › AttH-like › DUF7064 0.61 51.0 4.22e-01 90.3% 54.4%
3406042 206.1.1.55 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › EcKL 0.61 52.0 3.32e-01 100.0% 34.1%
3710638 881.1.1.0 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.61 52.0 4.00e-01 98.6% 42.9%
3517194 109.54.1.0 alpha superhelices › Repetitive alpha hairpins › C-terminal tetramerization domain of Utp1/Utp21/Utp12/Utp13 › C-terminal tetramerization domain of Utp1/Utp21/Utp12/Utp13 0.60 52.0 3.18e-01 100.0% 19.6%
3234869 206.1.1.44 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › DUF1679 0.60 52.0 3.29e-01 98.6% 33.2%
3935835 2.1.1.68 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RMI1_C 0.59 44.0 3.50e-01 79.2% 70.0%
3604446 2004.1.1.480 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N, AAA_21, AAA_29 0.58 49.0 2.89e-01 94.4% 18.9%
3204996 5.1.3.149 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_2, Kelch_KLHDC2_KLHL20_DRC7 0.58 49.0 3.11e-01 100.0% 35.2%
3215420 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.58 51.0 3.65e-01 100.0% 89.8%
3287191 243.1.1.71 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › DUF8176 0.58 49.0 4.25e-01 98.6% 85.0%
3711360 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.57 50.0 3.34e-01 97.2% 40.0%
3719897 227.1.1.18 a+b two layers › DNA clamp › DNA clamp › DNA clamp › DUF7881_C 0.57 41.0 3.55e-01 79.2% 95.2%
3401646 4041.1.1.1 a+b complex topology › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase › RNA_pol_Rpb2_2 0.56 39.0 2.97e-01 75.0% 28.6%
3543640 11.1.1.53 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DOMON 0.56 37.0 2.90e-01 75.0% 31.6%
3429748 7.1.1.10 beta barrels › PDZ domain › PDZ domain › PDZ domain › PDZ_6 0.55 45.0 3.99e-01 90.3% 99.0%
3255969 2004.1.1.174 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Elong_Iki1 0.55 47.0 3.24e-01 100.0% 85.3%
3725666 211.1.1.1 a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase 0.54 40.0 3.22e-01 84.7% 40.0%
3938204 7525.1.1.2 a/b three-layered sandwiches › Phosphoglycerate mutase-like › Phosphoglycerate mutase-like › Phosphoglycerate mutase-like › His_Phos_2 0.54 46.0 3.04e-01 100.0% 90.3%
4611007 331.4.1.0 a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 0.54 46.0 4.05e-01 100.0% 70.2%
3595625 211.1.1.0 a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 0.53 41.0 4.32e-01 84.7% 100.0%
5066585 881.2.1.0 a+b three layers › Mog1p/PsbP-like › TM1622-like › TM1622-like 0.53 42.0 3.64e-01 94.4% 83.8%
3694825 5.1.3.117 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1+Kelch_KLHDC2_KLHL20_DRC7 0.52 44.0 2.81e-01 100.0% 26.1%
3232668 206.1.1.0 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.52 43.0 2.92e-01 93.1% 58.5%
4938400 220.1.1.219 beta barrels › PH domain-like › PH domain-like › PH domain-like › CheF-arch 0.52 45.0 3.84e-01 95.8% 71.3%
3710325 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.51 43.0 4.17e-01 94.4% 95.0%
3173664 2.1.1.41 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RMI1_N_C 0.51 41.0 3.12e-01 86.1% 63.0%
3988638 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.50 43.0 3.87e-01 95.8% 81.0%