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LacPavin_0818_WC55_scaffold_113784_prodigal-single.1__X__X__00035
Bact-VirLacPavin_0818_WC55_scaffold_113784_prodigal-single.1__X__X__00035
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 9-82
Domain cluster:
rep: SR-VP_0-2_scaffold_141_5191495_prodigal-single.1__X__X__00180__D12-73
CATH (45)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4a18P00 | 3.30.720.90 | Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › | 0.72 | 46.0 | 4.83e-01 | 70.3% | 72.7% |
| 6n9aB02 | 3.30.420.200 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › | 0.65 | 46.0 | 4.74e-01 | 93.2% | 78.3% |
| 2f9wA01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.65 | 52.0 | 4.44e-01 | 91.9% | 96.9% |
| 4h0pA01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.65 | 50.0 | 3.73e-01 | 86.5% | 95.1% |
| 5f7pA01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.63 | 52.0 | 4.44e-01 | 91.9% | 98.4% |
| 3l0qA01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.63 | 52.0 | 3.42e-01 | 95.9% | 93.1% |
| 4af1A02 | 3.30.420.60 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › eRF1 domain 2 | 0.61 | 50.0 | 4.22e-01 | 90.5% | 97.6% |
| 3obyA02 | 3.30.420.60 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › eRF1 domain 2 | 0.61 | 52.0 | 4.54e-01 | 91.9% | 85.3% |
| 3agkA02 | 3.30.420.60 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › eRF1 domain 2 | 0.61 | 51.0 | 4.40e-01 | 95.9% | 96.8% |
| 4iy0A00 | 3.10.580.10 | Alpha Beta › Roll › CBS-domain › CBS-domain | 0.61 | 39.0 | 3.15e-01 | 100.0% | 31.6% |
| 4a2bA01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.60 | 48.0 | 4.02e-01 | 90.5% | 96.4% |
| 3bexA01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.60 | 49.0 | 4.10e-01 | 93.2% | 97.8% |
| 7essA01 | 3.30.420.140 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › YqgF/RNase H-like domain | 0.60 | 49.0 | 4.10e-01 | 91.9% | 90.9% |
| 3hrgA02 | 3.30.420.260 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Protein of unknown function DUF3822, C-terminal domain | 0.59 | 46.0 | 4.10e-01 | 87.8% | 83.3% |
| 3hi0A01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.58 | 50.0 | 4.30e-01 | 94.6% | 88.0% |
| 3mdqA01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.58 | 45.0 | 3.93e-01 | 87.8% | 95.1% |
| 4jd2B01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.58 | 52.0 | 3.97e-01 | 100.0% | 70.8% |
| 3dwlA01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.57 | 51.0 | 3.95e-01 | 100.0% | 71.8% |
| 4htlA01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.57 | 50.0 | 4.58e-01 | 100.0% | 95.0% |
| 5nckA01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.57 | 50.0 | 4.51e-01 | 100.0% | 94.3% |
| 7oo1A02 | 3.40.1380.20 | Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate Kinase; Chain: A, domain 1 › Pyruvate kinase, C-terminal domain | 0.57 | 50.0 | 4.30e-01 | 100.0% | 85.6% |
| 3zeuB01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.56 | 50.0 | 3.80e-01 | 100.0% | 58.7% |
| 1t6cA01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.56 | 43.0 | 3.79e-01 | 89.2% | 92.8% |
| 1xc3A01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.55 | 48.0 | 4.36e-01 | 100.0% | 91.3% |
| 1iv0A00 | 3.30.420.140 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › YqgF/RNase H-like domain | 0.55 | 49.0 | 4.46e-01 | 100.0% | 86.7% |
| 2x3eA02 | 3.40.47.10 | Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase | 0.55 | 48.0 | 3.81e-01 | 100.0% | 51.9% |
| 6ixwB01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.54 | 47.0 | 3.69e-01 | 97.3% | 92.6% |
| 5adxA01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.54 | 46.0 | 3.59e-01 | 97.3% | 89.5% |
| 4xs9A02 | 3.40.47.10 | Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase | 0.54 | 47.0 | 3.71e-01 | 100.0% | 51.2% |
| 1zowA02 | 3.40.47.10 | Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase | 0.54 | 47.0 | 3.88e-01 | 100.0% | 56.8% |
| 7vyuA02 | 3.40.47.10 | Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase | 0.54 | 47.0 | 3.71e-01 | 100.0% | 51.6% |
| 1a3wA01 | 3.40.1380.20 | Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate Kinase; Chain: A, domain 1 › Pyruvate kinase, C-terminal domain | 0.53 | 45.0 | 3.65e-01 | 97.3% | 67.1% |
| 3a52A01 | 3.40.720.10 | Alpha Beta › 3-Layer(aba) Sandwich › Alkaline Phosphatase, subunit A › Alkaline Phosphatase, subunit A | 0.53 | 43.0 | 2.91e-01 | 91.9% | 76.8% |
| 2gupA01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.53 | 47.0 | 4.32e-01 | 100.0% | 91.8% |
| 5tkwA01 | 3.30.420.380 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › | 0.53 | 45.0 | 3.48e-01 | 94.6% | 90.6% |
| 3weeA01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.53 | 43.0 | 3.39e-01 | 95.9% | 89.6% |
| 6et0A02 | 3.40.47.10 | Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase | 0.53 | 46.0 | 3.71e-01 | 100.0% | 52.3% |
| 5by7A02 | 3.40.47.10 | Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase | 0.52 | 45.0 | 3.68e-01 | 100.0% | 54.1% |
| 7uehA01 | 3.40.1380.20 | Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate Kinase; Chain: A, domain 1 › Pyruvate kinase, C-terminal domain | 0.52 | 45.0 | 3.91e-01 | 98.6% | 85.5% |
| 2i6gB00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.52 | 45.0 | 3.31e-01 | 97.3% | 87.9% |
| 1u6eA02 | 3.40.47.10 | Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase | 0.51 | 44.0 | 3.61e-01 | 100.0% | 53.3% |
| 3g9qA02 | 3.40.50.1980 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nitrogenase molybdenum iron protein domain | 0.51 | 45.0 | 3.55e-01 | 98.6% | 76.6% |
| 4fkeA03 | 2.60.40.1910 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.51 | 35.0 | 3.33e-01 | 71.6% | 100.0% |
| 2gw6A01 | 3.40.1350.10 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › | 0.50 | 38.0 | 3.41e-01 | 85.1% | 87.1% |
| 3uk7A01 | 3.40.50.880 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Class I glutamine amidotransferase (GATase) domain | 0.50 | 37.0 | 2.80e-01 | 100.0% | 31.1% |
ECOD (46)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4528763 | 2484.1.1.40 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RuvX | 0.62 | 57.0 | 4.55e-01 | 100.0% | 60.0% |
| 4244580 | 2484.1.1.37 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Pan_kinase | 0.62 | 48.0 | 4.14e-01 | 86.5% | 89.6% |
| 135213 | 2484.1.1.29 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Ppx-GppA | 0.62 | 48.0 | 4.12e-01 | 87.8% | 90.0% |
| 4135103 | 2484.1.1.40 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RuvX | 0.61 | 50.0 | 4.12e-01 | 90.5% | 90.6% |
| 4987036 | 282.1.1.1 ↗ | a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS | 0.60 | 43.0 | 3.54e-01 | 100.0% | 42.3% |
| 3983395 | 2484.1.1.136 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › MutL | 0.60 | 48.0 | 3.23e-01 | 91.9% | 94.8% |
| 4095791 | 2484.1.1.40 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RuvX | 0.60 | 47.0 | 4.00e-01 | 89.2% | 93.8% |
| 1144832 | 2484.1.1.63 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DUF3822 | 0.59 | 46.0 | 4.27e-01 | 87.8% | 95.0% |
| 3958064 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.59 | 47.0 | 4.17e-01 | 89.2% | 84.5% |
| 4307499 | 2484.1.1.40 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RuvX | 0.59 | 47.0 | 3.90e-01 | 91.9% | 88.3% |
| 4140416 | 2484.1.1.31 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Glucokinase | 0.59 | 48.0 | 4.14e-01 | 95.9% | 94.6% |
| 4308615 | 2484.1.1.40 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RuvX | 0.59 | 47.0 | 3.98e-01 | 91.9% | 95.6% |
| 139185 | 2484.1.1.29 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Ppx-GppA | 0.58 | 45.0 | 3.92e-01 | 87.8% | 92.7% |
| 4600109 | 2484.1.1.10 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › TsaD | 0.58 | 48.0 | 4.03e-01 | 95.9% | 92.9% |
| 4658274 | 2484.1.1.40 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RuvX | 0.58 | 46.0 | 3.89e-01 | 91.9% | 97.1% |
| 3955435 | 2484.1.1.216 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DUF7159 | 0.57 | 51.0 | 4.59e-01 | 100.0% | 78.1% |
| 4106493 | 2484.1.1.37 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Pan_kinase | 0.57 | 45.0 | 4.03e-01 | 89.2% | 94.5% |
| 4533527 | 2484.1.1.40 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RuvX | 0.57 | 45.0 | 3.81e-01 | 91.9% | 94.2% |
| 3500538 | 7518.1.1.1 ↗ | a/b three-layered sandwiches › PK C-terminal domain-like › PK C-terminal domain-like › PK C-terminal domain-like › PK_C | 0.56 | 49.0 | 4.06e-01 | 100.0% | 77.5% |
| 4238751 | 7518.1.1.1 ↗ | a/b three-layered sandwiches › PK C-terminal domain-like › PK C-terminal domain-like › PK C-terminal domain-like › PK_C | 0.56 | 48.0 | 4.07e-01 | 98.6% | 76.9% |
| 2553360 | 7518.1.1.1 ↗ | a/b three-layered sandwiches › PK C-terminal domain-like › PK C-terminal domain-like › PK C-terminal domain-like › PK_C | 0.56 | 49.0 | 4.06e-01 | 100.0% | 77.4% |
| 3391497 | 7518.1.1.1 ↗ | a/b three-layered sandwiches › PK C-terminal domain-like › PK C-terminal domain-like › PK C-terminal domain-like › PK_C | 0.56 | 49.0 | 3.85e-01 | 100.0% | 62.4% |
| 4184526 | 7518.1.1.1 ↗ | a/b three-layered sandwiches › PK C-terminal domain-like › PK C-terminal domain-like › PK C-terminal domain-like › PK_C | 0.56 | 48.0 | 4.18e-01 | 100.0% | 83.3% |
| 4324645 | 7518.1.1.1 ↗ | a/b three-layered sandwiches › PK C-terminal domain-like › PK C-terminal domain-like › PK C-terminal domain-like › PK_C | 0.56 | 49.0 | 4.10e-01 | 100.0% | 77.7% |
| 3451791 | 2492.1.1.0 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like | 0.55 | 47.0 | 3.33e-01 | 100.0% | 58.5% |
| 3467154 | 2492.1.1.0 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like | 0.55 | 45.0 | 3.53e-01 | 94.6% | 83.4% |
| 3261456 | 7518.1.1.1 ↗ | a/b three-layered sandwiches › PK C-terminal domain-like › PK C-terminal domain-like › PK C-terminal domain-like › PK_C | 0.55 | 48.0 | 4.00e-01 | 100.0% | 74.8% |
| 2114552 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.55 | 48.0 | 3.84e-01 | 100.0% | 85.0% |
| 5017650 | 7518.1.1.1 ↗ | a/b three-layered sandwiches › PK C-terminal domain-like › PK C-terminal domain-like › PK C-terminal domain-like › PK_C | 0.55 | 48.0 | 3.95e-01 | 100.0% | 68.8% |
| 4360838 | 7518.1.1.1 ↗ | a/b three-layered sandwiches › PK C-terminal domain-like › PK C-terminal domain-like › PK C-terminal domain-like › PK_C | 0.55 | 47.0 | 3.98e-01 | 100.0% | 78.5% |
| 4944121 | 7518.1.1.0 ↗ | a/b three-layered sandwiches › PK C-terminal domain-like › PK C-terminal domain-like › PK C-terminal domain-like | 0.55 | 47.0 | 3.98e-01 | 100.0% | 75.9% |
| 4560974 | 7518.1.1.1 ↗ | a/b three-layered sandwiches › PK C-terminal domain-like › PK C-terminal domain-like › PK C-terminal domain-like › PK_C | 0.55 | 47.0 | 3.96e-01 | 100.0% | 75.9% |
| 3827399 | 7518.1.1.1 ↗ | a/b three-layered sandwiches › PK C-terminal domain-like › PK C-terminal domain-like › PK C-terminal domain-like › PK_C | 0.54 | 48.0 | 3.92e-01 | 100.0% | 72.9% |
| 3056597 | 7518.1.1.1 ↗ | a/b three-layered sandwiches › PK C-terminal domain-like › PK C-terminal domain-like › PK C-terminal domain-like › PK_C | 0.54 | 48.0 | 4.04e-01 | 100.0% | 80.2% |
| 4516103 | 7518.1.1.1 ↗ | a/b three-layered sandwiches › PK C-terminal domain-like › PK C-terminal domain-like › PK C-terminal domain-like › PK_C | 0.54 | 47.0 | 4.03e-01 | 100.0% | 82.9% |
| 5014322 | 2498.1.1.0 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" | 0.54 | 48.0 | 3.48e-01 | 100.0% | 38.1% |
| 4118739 | 2484.1.1.40 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RuvX | 0.54 | 42.0 | 3.56e-01 | 91.9% | 90.3% |
| 4937406 | 7518.1.1.1 ↗ | a/b three-layered sandwiches › PK C-terminal domain-like › PK C-terminal domain-like › PK C-terminal domain-like › PK_C | 0.54 | 46.0 | 3.90e-01 | 100.0% | 74.1% |
| 4981190 | 7518.1.1.1 ↗ | a/b three-layered sandwiches › PK C-terminal domain-like › PK C-terminal domain-like › PK C-terminal domain-like › PK_C | 0.54 | 46.0 | 3.99e-01 | 100.0% | 80.8% |
| 3459739 | 7518.1.1.1 ↗ | a/b three-layered sandwiches › PK C-terminal domain-like › PK C-terminal domain-like › PK C-terminal domain-like › PK_C | 0.53 | 47.0 | 3.82e-01 | 100.0% | 70.3% |
| 3036116 | 7518.1.1.1 ↗ | a/b three-layered sandwiches › PK C-terminal domain-like › PK C-terminal domain-like › PK C-terminal domain-like › PK_C | 0.53 | 46.0 | 3.83e-01 | 100.0% | 75.4% |
| 3217626 | 7512.1.1.127 ↗ | a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_transf_92 | 0.52 | 43.0 | 3.46e-01 | 95.9% | 99.4% |
| 3552187 | 11.2.1.1 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 | 0.51 | 42.0 | 3.46e-01 | 93.2% | 55.0% |
| 3623777 | 301.7.1.0 ↗ | a+b three layers › Bacillus chorismate mutase-like › YjgF-like › YjgF-like | 0.51 | 40.0 | 3.20e-01 | 90.5% | 93.9% |
| 3391267 | 323.1.1.3 ↗ | a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding | 0.50 | 35.0 | 2.39e-01 | 75.7% | 26.9% |
| 3413297 | 11.2.1.1 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 | 0.50 | 41.0 | 3.48e-01 | 93.2% | 60.0% |