Back to structures

LacPavin_0818_WC55_scaffold_113784_prodigal-single.1__X__X__00039

Bact-Vir

LacPavin_0818_WC55_scaffold_113784_prodigal-single.1__X__X__00039

Identity

Kingdom:
phage

Quality

72.7 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 14-85
PDB
CATH (51)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2nykA01 3.30.500.30 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › 0.75 51.0 3.98e-01 70.8% 76.4%
4jglA00 2.40.128.530 Mainly Beta › Beta Barrel › Lipocalin › 0.74 57.0 4.38e-01 80.6% 42.8%
5w0kA01 3.90.380.20 Alpha Beta › Alpha-Beta Complex › Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 › Herpesvirus glycoprotein H, domain D-II 0.74 52.0 3.32e-01 73.6% 23.7%
1p32B00 3.10.280.10 Alpha Beta › Roll › Mitochondrial Matrix Protein; Chain A › Mitochondrial glycoprotein 0.73 58.0 4.30e-01 84.7% 60.2%
4hbrA00 3.10.450.360 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.71 49.0 3.91e-01 72.2% 51.4%
2eabB01 2.70.98.50 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › putative glycoside hydrolase family protein from bacillus halodurans 0.70 52.0 3.53e-01 77.8% 35.5%
7xr9E01 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.70 50.0 3.61e-01 75.0% 77.7%
1z94B00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.70 47.0 3.81e-01 70.8% 51.7%
2it9A00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.69 58.0 4.82e-01 90.3% 57.5%
3hdjA01 3.30.1780.10 Alpha Beta › 2-Layer Sandwich › ornithine cyclodeaminase, domain 1 › ornithine cyclodeaminase, domain 1 0.69 60.0 4.90e-01 100.0% 55.7%
1yqfB00 3.10.280.10 Alpha Beta › Roll › Mitochondrial Matrix Protein; Chain A › Mitochondrial glycoprotein 0.68 55.0 4.11e-01 87.5% 61.0%
2giaB00 2.30.31.40 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › 0.68 54.0 4.23e-01 84.7% 47.3%
3lm3A02 3.30.1120.110 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.68 53.0 4.64e-01 83.3% 88.8%
2fpnA01 3.30.2030.10 Alpha Beta › 2-Layer Sandwich › TBP-like › YwmB-like 0.68 46.0 3.68e-01 70.8% 60.7%
5fgoA00 3.10.450.700 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.67 54.0 5.76e-01 86.1% 100.0%
3k44B00 3.30.2450.30 Alpha Beta › 2-Layer Sandwich › Secreted effector protein pipB2 fold › 0.66 54.0 4.33e-01 88.9% 47.1%
5gv0A00 2.40.160.110 Mainly Beta › Beta Barrel › Porin › 0.66 55.0 4.21e-01 90.3% 55.6%
6yfiB01 3.30.380.10 Alpha Beta › 2-Layer Sandwich › MS2 Viral Coat Protein › MS2 Viral Coat Protein 0.65 56.0 4.49e-01 93.1% 77.0%
2nvnA00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.65 57.0 4.75e-01 95.8% 56.7%
3ni8A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.64 44.0 3.52e-01 70.8% 44.3%
1ohfA03 2.60.270.70 Mainly Beta › Sandwich › Mutm (Fpg) Protein; Chain: A, domain 2 › 0.64 48.0 3.81e-01 79.2% 67.4%
3k1lA01 3.30.457.40 Alpha Beta › 2-Layer Sandwich › Copper Amine Oxidase; Chain A, domain 1 › 0.64 51.0 4.74e-01 87.5% 79.3%
1t6lA00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.64 45.0 3.02e-01 73.6% 84.7%
1x53A01 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.61 41.0 3.47e-01 70.8% 47.3%
1nkgA01 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.61 52.0 3.55e-01 94.4% 93.6%
2avtB01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.60 42.0 3.13e-01 73.6% 77.3%
7obmA01 2.130.10.120 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Prolyl oligopeptidase, N-terminal domain 0.60 51.0 3.41e-01 100.0% 62.6%
3zq4A01 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.59 41.0 2.76e-01 72.2% 85.6%
4s1hA00 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.59 46.0 3.07e-01 83.3% 61.7%
2hzrA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.59 46.0 3.62e-01 86.1% 59.0%
4l9cA00 3.40.1000.30 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › 0.59 49.0 3.92e-01 93.1% 76.7%
4n4bA00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.59 47.0 3.12e-01 88.9% 72.1%
4azpA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.59 48.0 3.92e-01 90.3% 90.3%
3fkaB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.58 39.0 3.37e-01 70.8% 92.5%
3holA03 2.40.128.240 Mainly Beta › Beta Barrel › Lipocalin › 0.57 41.0 3.84e-01 79.2% 60.7%
1lkeA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.57 47.0 3.75e-01 94.4% 69.4%
2zwaA02 2.120.10.80 Mainly Beta › 6 Propeller › Neuraminidase › Kelch-type beta propeller 0.57 48.0 3.21e-01 98.6% 61.0%
1n7vA01 2.105.10.10 Mainly Beta › 3 Propeller › Pseudo beta propeller › Pseudo beta propeller 0.57 43.0 3.30e-01 83.3% 76.3%
2mqdA00 3.30.1460.60 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.56 47.0 4.04e-01 94.4% 61.3%
3nvqA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.55 48.0 2.98e-01 100.0% 59.1%
3h7jA02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.55 40.0 3.54e-01 79.2% 60.0%
3v8uA03 2.40.128.240 Mainly Beta › Beta Barrel › Lipocalin › 0.55 35.0 3.33e-01 79.2% 52.2%
7nn3B01 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.55 45.0 3.00e-01 94.4% 70.1%
1uzxA00 3.10.110.10 Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme 0.55 42.0 3.46e-01 84.7% 65.0%
2avtA02 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.54 40.0 2.91e-01 77.8% 81.9%
2az4A01 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.54 42.0 2.87e-01 84.7% 34.3%
3kstA00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.54 41.0 2.85e-01 86.1% 52.9%
1ah5A03 3.30.160.40 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Porphobilinogen deaminase, C-terminal domain 0.53 39.0 3.72e-01 79.2% 80.2%
3h7jA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.52 37.0 3.29e-01 77.8% 59.6%
2oc3A00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.51 43.0 2.95e-01 97.2% 46.2%
3u1kC01 3.30.230.70 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › GHMP Kinase, N-terminal domain 0.51 45.0 3.18e-01 100.0% 81.9%
ECOD (56)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3502994 319.1.1.0 beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones 0.82 56.0 4.48e-01 70.8% 46.9%
3225336 9.1.1.0 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.76 54.0 4.21e-01 73.6% 37.2%
5046458 844.1.1.2 beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › LOR 0.75 53.0 3.94e-01 73.6% 33.7%
3479716 3459.1.1.0 beta sandwiches › Fas apoptotic inhibitory molecule › Fas apoptotic inhibitory molecule › Fas apoptotic inhibitory molecule 0.75 48.0 4.53e-01 76.4% 55.3%
3483806 295.1.1.3 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › PurA 0.74 58.0 4.49e-01 83.3% 43.3%
4927380 12.3.1.0 beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich 0.74 50.0 3.37e-01 70.8% 55.8%
3425526 897.1.1.1 a+b two layers › Acidic mitochondrial matrix protein p32-like › Acidic mitochondrial matrix protein p32 › Acidic mitochondrial matrix protein p32 › MAM33 0.71 57.0 4.17e-01 84.7% 59.6%
3938904 3794.1.1.0 a+b two layers › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Barrel domain in methylcrotonyl-CoA carboxylase alpha-subunit 0.71 49.0 3.95e-01 72.2% 71.9%
4008120 5.1.5.139 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › DUF1481 0.70 49.0 4.11e-01 72.2% 50.8%
3241305 295.1.1.3 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › PurA 0.70 57.0 4.56e-01 87.5% 45.0%
3943894 77.1.1.7 beta meanders › open-sided beta-meander › Outer surface protein › Outer surface protein › DUF1481 0.70 49.0 4.06e-01 72.2% 48.8%
3038786 298.1.1.8 a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › GFO_IDH_MocA_C 0.70 50.0 3.45e-01 75.0% 68.1%
3364063 295.1.1.3 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › PurA 0.69 56.0 4.51e-01 88.9% 47.1%
3241959 4026.1.1.0 a+b three layers › a+b domain in Rap/Ran-GAP (Pfam 02145) › a+b domain in Rap/Ran-GAP (Pfam 02145) › a+b domain in Rap/Ran-GAP (Pfam 02145) 0.68 48.0 4.07e-01 81.9% 46.1%
3796352 295.1.1.0 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.68 48.0 5.04e-01 76.4% 83.1%
3905746 295.1.1.3 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › PurA 0.68 54.0 5.47e-01 86.1% 92.9%
3920675 295.1.1.3 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › PurA 0.67 55.0 5.45e-01 88.9% 89.3%
3427749 295.1.1.3 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › PurA 0.67 52.0 5.45e-01 83.3% 93.8%
5017154 295.1.1.0 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.66 52.0 4.29e-01 86.1% 48.9%
3483808 295.1.1.3 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › PurA 0.66 53.0 5.39e-01 86.1% 94.3%
3929256 295.1.1.3 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › PurA 0.66 55.0 4.38e-01 90.3% 47.1%
3394646 241.15.1.0 a+b two layers › Type III secretory system chaperone-like › FP (Fbxo7/PI31) dimerization domain › FP (Fbxo7/PI31) dimerization domain 0.65 50.0 3.70e-01 83.3% 53.7%
3672898 295.1.1.3 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › PurA 0.65 51.0 4.28e-01 86.1% 50.4%
3603731 295.1.1.0 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.65 51.0 4.19e-01 94.4% 45.7%
383967 216.1.1.7 a+b two layers › UBC-like › UBC-like › UBC-like › FANCL_d1 0.64 51.0 4.77e-01 87.5% 81.1%
5053021 4252.1.1.0 beta barrels › AttH-like › AttH-like › AttH-like 0.63 46.0 4.29e-01 76.4% 83.3%
4023490 331.3.1.0 a+b two layers › TBP-like › Bet v1-like › Bet v1-like 0.63 42.0 3.47e-01 70.8% 45.7%
3479006 331.3.1.0 a+b two layers › TBP-like › Bet v1-like › Bet v1-like 0.62 42.0 3.46e-01 70.8% 44.3%
5038973 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.62 54.0 3.46e-01 98.6% 63.3%
4969674 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.61 53.0 3.45e-01 100.0% 60.9%
3953302 331.2.1.1 a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain › PGM_PMM_IV 0.60 48.0 4.22e-01 84.7% 64.4%
3597350 73.1.1.0 beta sandwiches › SMAD/FHA domain › SMAD/FHA domain › SMAD/FHA domain 0.60 44.0 4.18e-01 84.7% 67.5%
4956928 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.59 43.0 3.09e-01 76.4% 73.7%
3739528 5.1.3.19 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Hira 0.59 51.0 3.72e-01 95.8% 68.8%
3430171 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.59 49.0 2.98e-01 88.9% 18.0%
3265841 216.1.1.20 a+b two layers › UBC-like › UBC-like › UBC-like › UBC_like 0.59 48.0 4.33e-01 88.9% 80.0%
3901623 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.59 45.0 3.99e-01 81.9% 90.4%
4992208 2003.1.5.81 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 0.58 41.0 2.83e-01 75.0% 21.2%
4954762 241.1.1.0 a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone 0.58 45.0 3.76e-01 83.3% 79.2%
3415735 216.1.1.20 a+b two layers › UBC-like › UBC-like › UBC-like › UBC_like 0.58 48.0 4.35e-01 88.9% 83.2%
3803981 243.1.1.25 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_3 0.58 46.0 3.63e-01 84.7% 100.0%
4141896 5.1.2.19 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed › DUF4185 0.58 48.0 3.14e-01 94.4% 56.2%
9393 2003.1.5.151 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_23, Methyltransf_25 0.57 45.0 3.04e-01 81.9% 30.1%
5074996 844.1.1.2 beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › LOR 0.57 49.0 3.80e-01 98.6% 59.4%
4989818 12.3.1.0 beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich 0.57 49.0 3.47e-01 94.4% 48.2%
3331262 216.1.1.20 a+b two layers › UBC-like › UBC-like › UBC-like › UBC_like 0.57 47.0 4.26e-01 88.9% 84.2%
3910825 5.1.3.6 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1 0.56 47.0 3.18e-01 98.6% 70.5%
3819824 5.1.3.118 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 0.56 49.0 3.37e-01 98.6% 74.9%
3257727 216.1.1.0 a+b two layers › UBC-like › UBC-like › UBC-like 0.55 44.0 3.63e-01 87.5% 51.5%
4472438 220.4.1.10 beta barrels › PH domain-like › second barrel domain in viral glycoproteins › second barrel domain in viral glycoproteins › DUF3586 0.55 42.0 4.03e-01 83.3% 91.7%
3810511 5.1.3.149 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_2, Kelch_KLHDC2_KLHL20_DRC7 0.54 42.0 2.79e-01 87.5% 53.8%
3986751 3197.1.1.0 a+b two layers › N-terminal domain of effector protein PipB2 › N-terminal domain of effector protein PipB2 › N-terminal domain of effector protein PipB2 0.53 41.0 3.55e-01 84.7% 53.6%
3959845 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.53 44.0 2.94e-01 100.0% 61.6%
3914464 11.1.1.562 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › BTBD16_C 0.53 42.0 3.38e-01 86.1% 87.1%
4012524 109.3.1.2 alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank,Ank_2 0.51 43.0 2.81e-01 97.2% 41.2%
3802876 5.1.3.67 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_1 0.51 41.0 2.85e-01 98.6% 73.0%