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LacPavin_0818_WC55_scaffold_113784_prodigal-single.1__X__X__00150

Bact-Vir

LacPavin_0818_WC55_scaffold_113784_prodigal-single.1__X__X__00150

Identity

Kingdom:
phage

Quality

88.0 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 14-80
PDB
CATH (64)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3h41A02 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.77 65.0 6.48e-01 100.0% 91.2%
4a6fA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.73 61.0 5.27e-01 94.0% 96.2%
1yn8A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.71 57.0 6.01e-01 100.0% 98.3%
3i35A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.70 56.0 5.97e-01 98.5% 100.0%
1b7tA02 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.70 46.0 5.11e-01 100.0% 88.5%
6vlfA03 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.69 54.0 5.77e-01 98.5% 98.3%
4k17B01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.69 57.0 4.89e-01 94.0% 80.2%
1zuyA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.68 54.0 5.71e-01 98.5% 100.0%
2krsA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.67 55.0 5.80e-01 95.5% 100.0%
1ug1A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.66 53.0 4.85e-01 100.0% 65.2%
1x43A01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.66 53.0 5.48e-01 100.0% 95.2%
6bioA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.66 51.0 5.50e-01 92.5% 100.0%
2heqA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.65 48.0 5.15e-01 100.0% 98.1%
2dn6A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.65 54.0 4.59e-01 94.0% 83.5%
2codA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.65 53.0 4.79e-01 94.0% 94.8%
2eczA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.65 51.0 5.08e-01 100.0% 82.9%
2egcA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.65 52.0 5.06e-01 100.0% 78.7%
4krtB03 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.64 56.0 5.63e-01 98.5% 100.0%
3au4A04 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.64 51.0 4.70e-01 92.5% 90.3%
2e5kA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.63 53.0 5.39e-01 100.0% 96.9%
6b9tF02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.63 45.0 3.90e-01 100.0% 47.7%
4umwA02 2.70.150.10 Mainly Beta › Distorted Sandwich › Calcium-transporting ATPase, cytoplasmic transduction domain A › Calcium-transporting ATPase, cytoplasmic transduction domain A 0.63 43.0 3.99e-01 100.0% 55.1%
4hslA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.62 46.0 3.51e-01 100.0% 32.5%
1egxA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.62 50.0 4.36e-01 95.5% 94.8%
3ht1A00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.62 45.0 3.59e-01 100.0% 37.3%
2h6cA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.62 47.0 3.90e-01 100.0% 44.2%
2evrA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.61 53.0 5.14e-01 100.0% 89.2%
5yv7A00 4.10.410.10 Few Secondary Structures › Irregular › Factor Xa Inhibitor › Pancreatic trypsin inhibitor Kunitz domain 0.61 35.0 3.67e-01 83.6% 61.7%
6q61A00 4.10.410.10 Few Secondary Structures › Irregular › Factor Xa Inhibitor › Pancreatic trypsin inhibitor Kunitz domain 0.60 34.0 3.55e-01 82.1% 59.3%
5u55A02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.60 46.0 3.86e-01 100.0% 46.7%
6b9tF01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.60 46.0 3.81e-01 100.0% 45.6%
7u32F02 2.30.30.10 Mainly Beta › Roll › SH3 type barrels. › Integrase, C-terminal domain superfamily, retroviral 0.59 42.0 4.55e-01 100.0% 98.0%
4bd9B01 4.10.410.10 Few Secondary Structures › Irregular › Factor Xa Inhibitor › Pancreatic trypsin inhibitor Kunitz domain 0.59 33.0 3.56e-01 83.6% 64.8%
2nysA00 2.30.30.220 Mainly Beta › Roll › SH3 type barrels. › SspB-like 0.59 51.0 4.31e-01 100.0% 59.0%
2fqpA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.59 45.0 4.08e-01 100.0% 60.0%
2pqqA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.58 47.0 3.67e-01 100.0% 40.8%
8h68A01 2.60.120.590 Mainly Beta › Sandwich › Jelly Rolls › Alpha-ketoglutarate-dependent dioxygenase AlkB-like 0.58 50.0 3.49e-01 100.0% 30.0%
3upuA03 2.30.30.780 Mainly Beta › Roll › SH3 type barrels. › 0.58 49.0 4.00e-01 97.0% 93.9%
4lejA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.57 43.0 3.25e-01 100.0% 31.5%
6l4cA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.57 43.0 3.20e-01 100.0% 30.4%
4cbvA02 2.40.50.1020 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › LytTr DNA-binding domain 0.56 41.0 3.42e-01 97.0% 44.1%
2oa2A01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.56 43.0 3.64e-01 100.0% 47.1%
1cauA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.56 42.0 3.18e-01 100.0% 30.9%
5cadA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.56 42.0 3.13e-01 100.0% 29.0%
2bnmA02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.56 43.0 3.61e-01 100.0% 47.5%
1uijB01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.56 41.0 3.24e-01 100.0% 33.9%
4avaA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.55 44.0 3.58e-01 100.0% 43.1%
1e54A00 2.40.160.10 Mainly Beta › Beta Barrel › Porin › Porin 0.55 42.0 2.79e-01 86.6% 97.0%
3ffjA04 2.60.40.4040 Mainly Beta › Sandwich › Immunoglobulin-like › 0.55 38.0 3.17e-01 88.1% 39.4%
4yrdA02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.55 42.0 3.60e-01 100.0% 49.6%
5by5A00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.53 38.0 3.32e-01 100.0% 46.1%
5yl6A01 2.60.120.590 Mainly Beta › Sandwich › Jelly Rolls › Alpha-ketoglutarate-dependent dioxygenase AlkB-like 0.53 46.0 3.46e-01 100.0% 42.6%
5wxuA02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.53 45.0 3.50e-01 100.0% 46.9%
3dn7A00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.52 42.0 3.37e-01 100.0% 42.1%
2vqaC01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.52 44.0 3.35e-01 100.0% 42.9%
4mzuF02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.52 44.0 3.52e-01 100.0% 51.4%
1fi2A00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.52 44.0 3.23e-01 100.0% 39.3%
6l9iA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.52 44.0 3.31e-01 100.0% 42.8%
6lf2B01 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.51 42.0 3.48e-01 92.5% 100.0%
1c77B00 3.10.20.130 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.51 36.0 2.99e-01 74.6% 82.8%
5tpvB00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.51 43.0 3.54e-01 100.0% 55.1%
3luuA00 3.30.2020.30 Alpha Beta › 2-Layer Sandwich › NE0471 N-terminal domain-like › 0.51 44.0 3.99e-01 95.5% 83.1%
2zuoA09 2.30.30.570 Mainly Beta › Roll › SH3 type barrels. › 0.51 39.0 4.03e-01 94.0% 93.7%
4mloA01 2.60.120.810 Mainly Beta › Sandwich › Jelly Rolls › 0.50 37.0 2.99e-01 100.0% 35.8%
ECOD (60)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3923675 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.81 66.0 6.76e-01 100.0% 90.8%
1545880 4.1.1.278 beta barrels › SH3 › SH3 › SH3 › SH3_YKFC_2nd 0.77 65.0 6.10e-01 100.0% 77.5%
3522910 4.1.1.92 beta barrels › SH3 › SH3 › SH3 › SH3_9 0.71 58.0 5.57e-01 100.0% 78.7%
3789233 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.70 57.0 5.79e-01 100.0% 90.8%
3525376 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.69 55.0 5.60e-01 100.0% 89.2%
3488995 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.68 55.0 5.63e-01 100.0% 92.3%
3372243 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.68 47.0 4.50e-01 100.0% 61.3%
3766868 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.68 55.0 5.04e-01 100.0% 66.7%
3486189 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.68 54.0 5.62e-01 97.0% 96.7%
3338134 4.1.1.155 beta barrels › SH3 › SH3 › SH3 › CRR42-like 0.68 59.0 5.70e-01 100.0% 86.7%
3890893 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.67 51.0 5.53e-01 94.0% 100.0%
3900733 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.66 54.0 5.33e-01 100.0% 85.7%
3700528 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.66 54.0 4.49e-01 94.0% 82.4%
3989972 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.66 54.0 5.07e-01 98.5% 74.1%
3917464 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.65 53.0 5.40e-01 100.0% 92.3%
4185893 4.1.1.394 beta barrels › SH3 › SH3 › SH3 › SlpA 0.65 55.0 5.56e-01 95.5% 98.5%
3895155 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.65 53.0 5.04e-01 100.0% 76.2%
3282870 10.12.1.0 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix 0.64 46.0 3.63e-01 100.0% 35.9%
4091533 4.1.1.58 beta barrels › SH3 › SH3 › SH3 › SH3_3 0.64 55.0 5.47e-01 98.5% 92.9%
3386424 11.1.4.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.64 47.0 4.36e-01 100.0% 61.1%
3890869 220.1.1.2 beta barrels › PH domain-like › PH domain-like › PH domain-like › WH1 0.63 51.0 3.87e-01 94.0% 60.6%
2157748 10.12.1.0 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix 0.63 45.0 3.54e-01 100.0% 34.7%
3594081 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.63 53.0 5.07e-01 97.0% 93.8%
4014171 10.12.1.0 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix 0.62 45.0 3.33e-01 100.0% 27.7%
None 0.62 45.0 3.42e-01 100.0% 31.0%
3538030 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.61 51.0 5.07e-01 100.0% 88.6%
3939132 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.61 55.0 4.79e-01 100.0% 73.0%
4995669 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.61 54.0 5.24e-01 100.0% 94.7%
2581331 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.61 51.0 5.02e-01 100.0% 92.0%
3911252 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.60 49.0 4.46e-01 94.0% 93.7%
4201125 10.12.1.1 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › cNMP_binding 0.60 47.0 3.68e-01 100.0% 38.1%
4662228 10.12.1.39 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_2 0.60 46.0 3.78e-01 100.0% 43.8%
3723454 10.12.1.39 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_2 0.60 45.0 3.49e-01 100.0% 35.0%
3595061 10.12.1.1 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › cNMP_binding 0.59 46.0 3.66e-01 100.0% 40.3%
3798341 10.12.1.0 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix 0.58 41.0 2.98e-01 100.0% 23.7%
3949750 10.12.1.1 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › cNMP_binding 0.58 45.0 3.57e-01 100.0% 39.3%
4947623 268.1.1.0 a+b two layers › Sterol carrier protein-like › Sterol carrier protein, SCP-related › Sterol carrier protein, SCP-related 0.56 43.0 3.80e-01 83.6% 76.0%
4577896 10.12.1.0 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix 0.55 43.0 3.76e-01 100.0% 54.6%
3587931 10.12.1.1 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › cNMP_binding 0.55 44.0 3.46e-01 100.0% 40.0%
3605842 11.1.1.67 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF525 0.55 39.0 2.87e-01 76.1% 74.1%
3416070 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.54 39.0 2.47e-01 94.0% 14.6%
3441143 4.1.1.94 beta barrels › SH3 › SH3 › SH3 › SAWADEE 0.53 42.0 3.80e-01 100.0% 60.0%
3642320 10.12.1.1 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › cNMP_binding 0.53 46.0 3.11e-01 100.0% 24.8%
3595627 11.1.4.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.53 36.0 3.22e-01 70.1% 96.8%
None 0.53 45.0 3.59e-01 100.0% 59.3%
None 0.53 45.0 3.56e-01 100.0% 59.3%
3249352 4.23.1.2 beta barrels › SH3 › Dom34/Pelota N-terminal domain-like › Dom34/Pelota N-terminal domain-like › PF26356 0.53 45.0 3.73e-01 100.0% 60.0%
3408923 10.12.1.0 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix 0.52 44.0 3.41e-01 100.0% 48.2%
3999787 11.1.4.98 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › Ig_NOMO 0.52 43.0 4.06e-01 91.0% 87.5%
5058198 10.12.1.3 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_1 0.52 44.0 3.67e-01 100.0% 63.2%
4862637 10.12.1.29 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › CDO_I 0.52 44.0 3.56e-01 100.0% 53.6%
3732029 10.12.1.3 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_1 0.51 44.0 2.75e-01 100.0% 19.5%
3403394 3369.1.1.1 beta meanders › lysosome-associated membrane protein LAMP-3 › lysosome-associated membrane protein LAMP-3 › lysosome-associated membrane protein LAMP-3 › Lamp2-like_luminal 0.51 38.0 3.02e-01 86.6% 88.2%
3969691 10.12.1.39 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_2 0.51 43.0 3.35e-01 100.0% 47.3%
None 0.51 43.0 2.73e-01 100.0% 65.6%
3655985 10.12.1.3 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_1 0.51 42.0 3.55e-01 98.5% 60.8%
3467072 10.12.1.3 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_1 0.51 42.0 3.14e-01 100.0% 39.0%
4152523 11.1.1.129 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Interfer-bind 0.51 36.0 3.20e-01 76.1% 94.0%
3828956 11.1.1.919 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF7356 0.50 36.0 3.09e-01 77.6% 89.6%
3691764 10.12.1.3 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_1 0.50 43.0 2.68e-01 100.0% 63.8%