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LacPavin_0818_WC55_scaffold_113784_prodigal-single.1__X__X__00180

Bact-Vir

LacPavin_0818_WC55_scaffold_113784_prodigal-single.1__X__X__00180

Identity

Kingdom:
phage

Quality

76.0 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 12-59
PDB
Domain cluster: representative
CATH (53)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1o4xA02 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.90 64.0 6.16e-01 81.2% 66.7%
2da7A00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.88 62.0 5.38e-01 81.2% 50.7%
1b72A00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.87 66.0 5.72e-01 79.2% 55.9%
2e19A01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.86 57.0 5.84e-01 75.0% 70.2%
1le8A00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.85 62.0 6.03e-01 77.1% 69.8%
2da3A01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.84 56.0 5.67e-01 75.0% 70.2%
1s8nA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.83 56.0 5.24e-01 70.8% 67.2%
1rr7A02 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.82 52.0 5.22e-01 70.8% 64.6%
1uhsA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.79 59.0 5.66e-01 79.2% 72.2%
1x2mA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.78 59.0 5.67e-01 81.2% 74.1%
2dn0A00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.77 58.0 4.97e-01 81.2% 51.3%
1x2nA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.77 61.0 5.66e-01 87.5% 70.0%
2ld5A00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.76 58.0 5.15e-01 81.2% 58.2%
2oap202 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.76 67.0 4.11e-01 97.9% 86.6%
4fjqA01 1.10.600.10 Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase 0.75 62.0 3.72e-01 97.9% 14.2%
2ys9A00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.75 54.0 4.74e-01 81.2% 52.9%
4pt4B00 4.10.520.10 Few Secondary Structures › Irregular › HU Protein; Chain A › IHF-like DNA-binding proteins 0.74 50.0 4.00e-01 72.9% 35.1%
1re5A01 1.10.275.10 Mainly Alpha › Orthogonal Bundle › Fumarase C; Chain B, domain 1 › Fumarase/aspartase (N-terminal domain) 0.73 48.0 3.81e-01 72.9% 32.4%
1bw5A00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.71 53.0 4.80e-01 81.2% 59.1%
3c57B00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.71 52.0 5.20e-01 79.2% 75.5%
1lfuP00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.71 54.0 4.62e-01 85.4% 50.0%
3i71B00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.71 44.0 4.19e-01 70.8% 51.7%
2ebyA01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.71 49.0 4.24e-01 81.2% 45.6%
4e4yA00 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.70 59.0 3.68e-01 91.7% 47.1%
1di1A00 1.10.600.10 Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase 0.69 58.0 3.62e-01 100.0% 20.7%
2go7A02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.69 52.0 4.76e-01 85.4% 97.0%
1kblA04 3.20.20.60 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Phosphoenolpyruvate-binding domains 0.67 58.0 3.46e-01 95.8% 13.2%
2w7nA00 1.10.10.2690 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.67 55.0 4.36e-01 89.6% 60.6%
2o8xA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 61.0 5.58e-01 100.0% 95.1%
8dtqA01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.66 48.0 4.12e-01 79.2% 96.3%
3c8tA01 1.10.275.10 Mainly Alpha › Orthogonal Bundle › Fumarase C; Chain B, domain 1 › Fumarase/aspartase (N-terminal domain) 0.66 45.0 3.64e-01 81.2% 36.1%
3r84B00 6.10.280.160 Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Mediator of RNA polymerase II transcription subunit 22 0.65 48.0 4.19e-01 100.0% 50.0%
1w36B05 3.90.320.10 Alpha Beta › Alpha-Beta Complex › Lambda Exonuclease; Chain A › 0.64 46.0 2.91e-01 81.2% 66.1%
1rr7A01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.63 47.0 4.75e-01 83.3% 87.0%
2lo0A00 1.10.286.70 Mainly Alpha › Orthogonal Bundle › GTP Cyclohydrolase I; Chain A, domain 1 › Get5 dimerization domain 0.63 49.0 5.04e-01 95.8% 93.3%
3dfgA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 44.0 4.47e-01 85.4% 77.1%
2pmyA00 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.60 49.0 4.41e-01 100.0% 93.2%
3of4A00 3.40.109.10 Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase 0.58 45.0 2.99e-01 95.8% 19.8%
2jifA03 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.58 50.0 3.56e-01 100.0% 31.2%
3fd9A03 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.58 48.0 4.30e-01 100.0% 67.1%
6lumD01 1.20.1300.10 Mainly Alpha › Up-down Bundle › 3 helical TM bundles of succinate and fumarate reductases › Fumarate reductase/succinate dehydrogenase, transmembrane subunit 0.58 46.0 3.60e-01 100.0% 52.8%
6xzqA01 3.40.91.90 Alpha Beta › 3-Layer(aba) Sandwich › Restriction Endonuclease › Influenza RNA-dependent RNA polymerase subunit PA, endonuclease domain 0.58 47.0 3.28e-01 91.7% 57.4%
4nb5B02 1.10.287.160 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat 0.57 46.0 4.31e-01 100.0% 76.6%
5kbwB00 1.10.1760.20 Mainly Alpha › Orthogonal Bundle › Arp2/3 complex 21 kDa subunit ARPC3 › 0.57 45.0 3.21e-01 95.8% 39.2%
3g2bA00 1.10.10.1150 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Coenzyme PQQ synthesis protein D (PqqD) 0.57 48.0 3.99e-01 100.0% 62.2%
1wp7A00 1.10.287.770 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › YojJ-like 0.56 47.0 4.36e-01 100.0% 76.6%
2h21A02 3.90.1420.10 Alpha Beta › Alpha-Beta Complex › set domain protein methyltransferase, domain 2 › Rubisco LSMT, substrate-binding domain 0.56 48.0 3.35e-01 100.0% 30.3%
1pixA03 3.90.226.10 Alpha Beta › Alpha-Beta Complex › 2-enoyl-CoA Hydratase; Chain A, domain 1 › 2-enoyl-CoA Hydratase; Chain A, domain 1 0.55 48.0 2.97e-01 100.0% 24.1%
1o1yA00 3.40.50.880 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Class I glutamine amidotransferase (GATase) domain 0.55 47.0 3.04e-01 100.0% 36.5%
1tfeA02 1.10.286.20 Mainly Alpha › Orthogonal Bundle › GTP Cyclohydrolase I; Chain A, domain 1 › 0.54 40.0 4.07e-01 85.4% 88.9%
3layF00 1.20.120.1490 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.53 42.0 3.73e-01 100.0% 60.3%
1vhxB00 3.30.420.140 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › YqgF/RNase H-like domain 0.51 39.0 3.03e-01 95.8% 91.3%
3jr7A01 3.40.50.10440 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Dihydroxyacetone kinase; domain 1 0.51 35.0 2.76e-01 75.0% 32.2%
ECOD (55)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3323749 101.1.1.298 alpha arrays › HTH › HTH › Three-helical HTH › DUF7645 0.91 68.0 6.25e-01 81.2% 63.3%
3997838 101.1.1.1 alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain 0.90 65.0 5.75e-01 81.2% 55.4%
3889817 101.1.1.1 alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain 0.90 65.0 5.29e-01 81.2% 45.0%
3219210 101.1.1.1 alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain 0.89 67.0 6.66e-01 79.2% 76.0%
3327057 101.1.1.298 alpha arrays › HTH › HTH › Three-helical HTH › DUF7645 0.88 71.0 6.53e-01 87.5% 68.3%
3268716 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.88 68.0 5.86e-01 81.2% 55.7%
3652032 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.88 63.0 5.30e-01 81.2% 48.0%
3886164 101.1.1.1 alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain 0.88 62.0 6.10e-01 79.2% 70.0%
3844546 101.1.1.1 alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain 0.88 66.0 5.68e-01 79.2% 54.3%
3507787 101.1.1.1 alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain 0.87 64.0 6.33e-01 81.2% 74.0%
3560402 101.1.1.36 alpha arrays › HTH › HTH › Three-helical HTH › Homeobox_KN 0.86 60.0 5.37e-01 79.2% 53.8%
3994687 101.1.1.1 alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain 0.86 65.0 6.14e-01 79.2% 69.1%
3495504 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.86 63.0 6.27e-01 77.1% 74.0%
3218285 101.1.1.1 alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain 0.85 66.0 5.09e-01 81.2% 41.1%
3485420 101.1.1.1 alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain 0.85 66.0 6.02e-01 81.2% 65.0%
3229130 101.1.1.1 alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain 0.85 61.0 6.01e-01 79.2% 72.0%
3507782 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.84 68.0 6.78e-01 89.6% 84.0%
3869797 101.1.1.1 alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain 0.84 63.0 5.46e-01 79.2% 54.3%
3333472 101.1.1.1 alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain 0.84 65.0 5.44e-01 81.2% 52.0%
3847014 3919.1.1.2 alpha duplicates or obligate multimers › N-terminal domain of COMMD9 › N-terminal domain of COMMD9 › N-terminal domain of COMMD9 › COMM_HN 0.83 68.0 5.00e-01 87.5% 38.3%
3767171 101.1.1.36 alpha arrays › HTH › HTH › Three-helical HTH › Homeobox_KN 0.82 66.0 5.13e-01 87.5% 43.2%
3259221 101.1.1.1 alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain 0.82 68.0 6.24e-01 87.5% 71.7%
3218375 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.81 67.0 6.35e-01 87.5% 78.2%
4319187 101.1.1.1 alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain 0.81 62.0 5.03e-01 81.2% 45.9%
3911740 101.1.1.36 alpha arrays › HTH › HTH › Three-helical HTH › Homeobox_KN 0.81 63.0 6.07e-01 87.5% 74.5%
3605193 1106.1.1.1 alpha arrays › RDS3 complex subunit 10 › RDS3 complex subunit 10 › RDS3 complex subunit 10 › SF3b10 0.80 70.0 5.99e-01 97.9% 65.3%
3301544 1106.1.1.1 alpha arrays › RDS3 complex subunit 10 › RDS3 complex subunit 10 › RDS3 complex subunit 10 › SF3b10 0.80 69.0 5.96e-01 97.9% 69.3%
3487844 1106.1.1.0 alpha arrays › RDS3 complex subunit 10 › RDS3 complex subunit 10 › RDS3 complex subunit 10 0.79 68.0 5.79e-01 97.9% 65.0%
3598761 1106.1.1.0 alpha arrays › RDS3 complex subunit 10 › RDS3 complex subunit 10 › RDS3 complex subunit 10 0.78 67.0 5.74e-01 97.9% 62.0%
4016103 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.78 56.0 5.57e-01 77.1% 72.0%
4983993 101.1.3.0 alpha arrays › HTH › HTH › tetra-helical, LuxR-like 0.76 55.0 5.08e-01 77.1% 65.0%
3010699 3276.1.1.0 alpha arrays › N-terminal domain in MogR repressor › N-terminal domain in MogR repressor › N-terminal domain in MogR repressor 0.73 53.0 4.94e-01 81.2% 62.3%
3653791 3826.1.1.0 alpha bundles › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) 0.72 62.0 5.43e-01 100.0% 64.0%
3446122 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.72 49.0 5.31e-01 83.3% 100.0%
3970291 101.1.1.217 alpha arrays › HTH › HTH › Three-helical HTH › RsmI_C 0.68 45.0 4.65e-01 70.8% 73.3%
4263341 192.7.1.2 alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Seryl_tRNA_N 0.67 48.0 3.71e-01 100.0% 33.0%
4320306 192.7.1.2 alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Seryl_tRNA_N 0.66 47.0 3.68e-01 100.0% 34.5%
4304756 605.2.1.3 alpha duplicates or obligate multimers › ROP-like › Hypothetical protein D-63 › Hypothetical protein D-63 › Seryl_tRNA_N 0.65 47.0 3.66e-01 100.0% 34.5%
4110549 192.7.1.2 alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Seryl_tRNA_N 0.65 46.0 3.62e-01 100.0% 34.5%
4385365 192.7.1.2 alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Seryl_tRNA_N 0.64 45.0 3.50e-01 100.0% 33.6%
4945888 5041.1.1.0 extended segments › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C 0.63 52.0 4.57e-01 100.0% 65.0%
4937169 192.7.1.2 alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Seryl_tRNA_N 0.62 52.0 4.11e-01 100.0% 60.0%
4429833 192.7.1.2 alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Seryl_tRNA_N 0.61 52.0 4.06e-01 100.0% 60.0%
4231284 192.7.1.2 alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Seryl_tRNA_N 0.61 51.0 4.04e-01 100.0% 60.0%
5025813 192.7.1.2 alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Seryl_tRNA_N 0.60 50.0 3.94e-01 100.0% 60.0%
3278996 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.59 47.0 3.74e-01 89.6% 72.0%
4424778 605.2.1.3 alpha duplicates or obligate multimers › ROP-like › Hypothetical protein D-63 › Hypothetical protein D-63 › Seryl_tRNA_N 0.57 46.0 3.65e-01 100.0% 41.8%
4145683 7558.1.1.1 a/b three-layered sandwiches › Glycerol-3-phosphate (1)-acyltransferase › Glycerol-3-phosphate (1)-acyltransferase › Glycerol-3-phosphate (1)-acyltransferase › Acyltransferase 0.57 49.0 3.03e-01 100.0% 75.9%
3741234 605.2.1.3 alpha duplicates or obligate multimers › ROP-like › Hypothetical protein D-63 › Hypothetical protein D-63 › Seryl_tRNA_N 0.57 44.0 3.51e-01 100.0% 39.1%
4147453 192.7.1.2 alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Seryl_tRNA_N 0.56 45.0 3.66e-01 100.0% 44.5%
4928641 101.1.2.70 alpha arrays › HTH › HTH › winged helix domain › PqqD 0.56 47.0 4.15e-01 100.0% 76.0%
4026916 3871.1.1.1 alpha duplicates or obligate multimers › PHIST › PHIST › PHIST › PRESAN 0.56 47.0 3.45e-01 97.9% 34.3%
4300676 192.7.1.2 alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Seryl_tRNA_N 0.56 45.0 3.62e-01 100.0% 66.4%
4120406 192.7.1.2 alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Seryl_tRNA_N 0.53 41.0 3.38e-01 100.0% 44.5%
4467398 101.1.2.81 alpha arrays › HTH › HTH › winged helix domain › Put_DNA-bind_N 0.51 46.0 4.03e-01 100.0% 90.0%