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LacPavin_0818_WC55_scaffold_113784_prodigal-single.1__X__X__00181
Bact-VirLacPavin_0818_WC55_scaffold_113784_prodigal-single.1__X__X__00181
Identity
- Kingdom:
- phage
Quality
72.0
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 34-74
Domain cluster:
representative
CATH (47)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1e2tA03 | 2.40.128.150 | Mainly Beta › Beta Barrel › Lipocalin › Cysteine proteinases | 0.71 | 55.0 | 3.92e-01 | 85.4% | 43.6% |
| 7obmA01 | 2.130.10.120 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Prolyl oligopeptidase, N-terminal domain | 0.70 | 55.0 | 3.25e-01 | 100.0% | 11.5% |
| 5a35A00 | 2.40.50.100 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain | 0.69 | 55.0 | 4.10e-01 | 92.7% | 86.6% |
| 3mlqH00 | 2.40.10.170 | Mainly Beta › Beta Barrel › Thrombin, subunit H › | 0.66 | 45.0 | 4.51e-01 | 73.2% | 88.1% |
| 2jh3A03 | 3.30.1360.190 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › | 0.66 | 53.0 | 3.92e-01 | 92.7% | 63.4% |
| 5tkwA02 | 3.30.420.370 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › GspL cytoplasmic domain, C-terminal subdomain | 0.65 | 43.0 | 3.73e-01 | 73.2% | 42.4% |
| 1shyB01 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.63 | 50.0 | 2.84e-01 | 90.2% | 23.3% |
| 5vmzA01 | 3.30.160.60 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger | 0.63 | 41.0 | 4.15e-01 | 75.6% | 66.7% |
| 5w36B01 | 3.90.980.10 | Alpha Beta › Alpha-Beta Complex › DNA primase DNAg catalytic core, N-terminal domain › DNA primase, catalytic core, N-terminal domain | 0.60 | 49.0 | 3.55e-01 | 100.0% | 76.1% |
| 2hc5A01 | 3.30.160.170 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › FlaG-like | 0.60 | 46.0 | 3.61e-01 | 90.2% | 48.0% |
| 1hxnA00 | 2.110.10.10 | Mainly Beta › 4 Propeller › Hemopexin › Hemopexin-like domain | 0.60 | 48.0 | 3.11e-01 | 95.1% | 21.4% |
| 3fewX02 | 3.30.1310.40 | Alpha Beta › 2-Layer Sandwich › Ybab; Chain: A; › | 0.59 | 47.0 | 3.68e-01 | 92.7% | 60.0% |
| 1ekgA00 | 3.30.920.10 | Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Frataxin/CyaY | 0.59 | 40.0 | 2.97e-01 | 73.2% | 30.3% |
| 3sfvB02 | 6.10.140.2010 | Special › Helix non-globular › Helix Hairpins › | 0.58 | 44.0 | 2.89e-01 | 87.8% | 28.0% |
| 4o8uA00 | 3.30.420.440 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Protein of unknown function DUF4152 | 0.58 | 43.0 | 2.79e-01 | 92.7% | 15.4% |
| 2g7jA00 | 3.90.1150.40 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Protein of unknown function DUF2002 | 0.58 | 42.0 | 3.28e-01 | 85.4% | 65.2% |
| 1xipA00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.58 | 46.0 | 2.76e-01 | 97.6% | 10.6% |
| 4bv4R00 | 3.80.10.10 | Alpha Beta › Alpha-Beta Horseshoe › Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) › Ribonuclease Inhibitor | 0.58 | 44.0 | 2.57e-01 | 100.0% | 8.2% |
| 3p2mA00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.57 | 44.0 | 2.78e-01 | 95.1% | 29.9% |
| 2eaqA00 | 2.30.42.10 | Mainly Beta › Roll › Pdz3 Domain › PDZ domain | 0.56 | 44.0 | 3.52e-01 | 90.2% | 50.6% |
| 4l1nA00 | 2.40.128.660 | Mainly Beta › Beta Barrel › Lipocalin › Uncharacterised protein PF15525, DUF4652 | 0.56 | 43.0 | 3.11e-01 | 100.0% | 48.4% |
| 1jyaB00 | 3.30.1460.10 | Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › | 0.56 | 46.0 | 3.42e-01 | 100.0% | 58.7% |
| 2d0oB00 | 3.40.50.10150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › B12-dependent dehydatase associated subunit | 0.56 | 39.0 | 3.12e-01 | 85.4% | 82.4% |
| 4eqaC00 | 2.40.128.650 | Mainly Beta › Beta Barrel › Lipocalin › | 0.55 | 44.0 | 3.16e-01 | 100.0% | 30.7% |
| 2ntkB00 | 3.60.20.20 | Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Inosine monophosphate cyclohydrolase-like | 0.55 | 44.0 | 2.91e-01 | 95.1% | 29.7% |
| 2jsnA00 | 2.30.42.40 | Mainly Beta › Roll › Pdz3 Domain › | 0.55 | 45.0 | 3.56e-01 | 97.6% | 76.0% |
| 4cckA03 | 3.90.930.40 | Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › | 0.55 | 42.0 | 2.98e-01 | 90.2% | 61.0% |
| 2aujD03 | 2.40.50.100 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain | 0.55 | 41.0 | 3.66e-01 | 82.9% | 54.8% |
| 1fm2B01 | 3.60.20.10 | Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain | 0.55 | 39.0 | 2.54e-01 | 87.8% | 40.8% |
| 3kyeA00 | 3.30.450.30 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic | 0.54 | 36.0 | 2.75e-01 | 73.2% | 34.5% |
| 3qwuA01 | 3.10.450.740 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.53 | 38.0 | 3.74e-01 | 80.5% | 83.0% |
| 4a17E01 | 3.90.930.12 | Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › Ribosomal protein L6 | 0.53 | 35.0 | 3.02e-01 | 73.2% | 70.6% |
| 5mu3B00 | 3.40.50.12050 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.53 | 43.0 | 2.94e-01 | 100.0% | 24.5% |
| 3k44B00 | 3.30.2450.30 | Alpha Beta › 2-Layer Sandwich › Secreted effector protein pipB2 fold › | 0.53 | 42.0 | 3.06e-01 | 95.1% | 31.4% |
| 1tr8A01 | 2.20.70.30 | Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › Nascent polypeptide-associated complex domain | 0.52 | 40.0 | 3.78e-01 | 87.8% | 84.6% |
| 3wpwA00 | 3.30.1330.60 | Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › OmpA-like domain | 0.52 | 41.0 | 2.90e-01 | 95.1% | 92.6% |
| 4blpB00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.52 | 40.0 | 2.50e-01 | 87.8% | 21.5% |
| 1vx7H01 | 3.90.930.12 | Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › Ribosomal protein L6 | 0.52 | 35.0 | 2.96e-01 | 73.2% | 71.8% |
| 3djwA00 | 3.30.160.300 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.52 | 39.0 | 3.21e-01 | 95.1% | 49.5% |
| 5gaeG01 | 3.90.930.12 | Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › Ribosomal protein L6 | 0.51 | 42.0 | 3.40e-01 | 90.2% | 69.1% |
| 2r31A01 | 3.30.2180.10 | Alpha Beta › 2-Layer Sandwich › ATP12-like › ATP12-like | 0.51 | 36.0 | 3.17e-01 | 82.9% | 48.5% |
| 3a27A00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.51 | 38.0 | 2.53e-01 | 90.2% | 49.8% |
| 1k92A02 | 3.90.1260.10 | Alpha Beta › Alpha-Beta Complex › Argininosuccinate synthetase, chain A, domain 2 › Argininosuccinate synthetase, chain A, domain 2 | 0.50 | 39.0 | 2.53e-01 | 90.2% | 50.7% |
| 3oc9A00 | 3.90.550.10 | Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A | 0.50 | 40.0 | 2.37e-01 | 95.1% | 78.3% |
| 4esnA00 | 2.60.320.10 | Mainly Beta › Sandwich › mini-chromosome maintenance (MCM) complex, domain 2 › N-utilization substance G protein NusG, insert domain | 0.50 | 38.0 | 3.30e-01 | 95.1% | 69.2% |
| 2x10A04 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.50 | 36.0 | 3.00e-01 | 92.7% | 76.2% |
| 4xpmB00 | 3.40.1840.10 | Alpha Beta › 3-Layer(aba) Sandwich › Profilin-like › YNR034W-A-like | 0.50 | 35.0 | 3.23e-01 | 87.8% | 49.3% |
ECOD (39)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3260335 | 5.1.4.14 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Peptidase_S9_N | 0.78 | 57.0 | 3.30e-01 | 100.0% | 8.9% |
| 3816768 | 5.1.4.550 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Kelch_FKB95 | 0.77 | 66.0 | 3.99e-01 | 97.6% | 14.9% |
| 4613622 | 5.1.4.14 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Peptidase_S9_N | 0.75 | 57.0 | 3.39e-01 | 100.0% | 10.6% |
| 3277308 | 5.1.3.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed | 0.71 | 57.0 | 3.75e-01 | 100.0% | 20.7% |
| 2800366 | 5.1.4.14 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Peptidase_S9_N | 0.71 | 61.0 | 3.53e-01 | 97.6% | 12.3% |
| 5054848 | 5.1.10.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 12-bladed | 0.64 | 52.0 | 3.93e-01 | 92.7% | 66.0% |
| 3614625 | 319.1.1.5 ↗ | beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › PIH1_CS | 0.64 | 47.0 | 3.56e-01 | 92.7% | 32.4% |
| 3970061 | 2006.1.1.0 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like | 0.62 | 43.0 | 2.79e-01 | 75.6% | 63.6% |
| 5033222 | 375.1.1.26 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Rpr2 | 0.62 | 44.0 | 3.36e-01 | 97.6% | 30.5% |
| 3269700 | 5.1.4.8 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CNH | 0.62 | 49.0 | 3.03e-01 | 100.0% | 20.3% |
| 3777109 | 109.3.1.166 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank, Ank_2, Ank_3 | 0.61 | 43.0 | 2.52e-01 | 92.7% | 7.8% |
| 5038830 | 375.1.1.26 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Rpr2 | 0.60 | 41.0 | 3.18e-01 | 90.2% | 30.0% |
| 3493489 | 64.1.1.0 ↗ | beta meanders › WW domain-like › WW domain › WW domain | 0.59 | 47.0 | 4.48e-01 | 95.1% | 76.0% |
| 3945393 | 7089.1.1.2 ↗ | a+b two layers › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD › DUF5405 | 0.59 | 44.0 | 3.73e-01 | 87.8% | 53.8% |
| 3741319 | 5.1.4.223 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_RIC1_2nd | 0.59 | 48.0 | 3.01e-01 | 97.6% | 15.8% |
| 3232904 | 207.1.1.81 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH | 0.59 | 45.0 | 2.93e-01 | 90.2% | 20.4% |
| 3463588 | 5.1.4.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 | 0.59 | 47.0 | 2.84e-01 | 100.0% | 22.4% |
| 2576776 | 5.1.4.62 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PROPPIN | 0.59 | 49.0 | 2.97e-01 | 97.6% | 16.7% |
| 3990244 | 319.1.1.3 ↗ | beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › CS | 0.59 | 43.0 | 3.21e-01 | 87.8% | 28.3% |
| 5049083 | 304.37.1.0 ↗ | a+b two layers › Alpha-beta plaits › Sulfite reductase, domains 1 and 3 › Sulfite reductase, domains 1 and 3 | 0.59 | 45.0 | 2.80e-01 | 85.4% | 31.0% |
| 3626212 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.58 | 41.0 | 2.92e-01 | 87.8% | 21.3% |
| 4463837 | 375.1.1.26 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Rpr2 | 0.58 | 40.0 | 3.10e-01 | 92.7% | 29.5% |
| 3248985 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.57 | 43.0 | 3.19e-01 | 87.8% | 33.1% |
| 1692307 | 4011.1.1.0 ↗ | beta barrels › beta-barrel domain in acetyl-CoA synthetase-like proteins › beta-barrel domain in acetyl-CoA synthetase-like proteins › beta-barrel domain in acetyl-CoA synthetase-like proteins | 0.56 | 47.0 | 4.03e-01 | 97.6% | 89.7% |
| 4418386 | 3775.1.1.2 ↗ | beta barrels › Lysosome membrane protein 2 lumenal domain › Lysosome membrane protein 2 lumenal domain › Lysosome membrane protein 2 lumenal domain › PorA | 0.55 | 42.0 | 2.64e-01 | 92.7% | 20.3% |
| 1769944 | 7.1.1.0 ↗ | beta barrels › PDZ domain › PDZ domain › PDZ domain | 0.55 | 45.0 | 3.65e-01 | 97.6% | 83.0% |
| 3495969 | 919.1.1.0 ↗ | few secondary structure elements › Ribosomal protein L36 › Ribosomal protein L36 › Ribosomal protein L36 | 0.55 | 40.0 | 3.97e-01 | 95.1% | 76.7% |
| 3626345 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.54 | 42.0 | 3.22e-01 | 92.7% | 90.0% |
| 1291229 | 101.1.2.194 ↗ | alpha arrays › HTH › HTH › winged helix domain › RIOX1_C_WH | 0.54 | 41.0 | 3.00e-01 | 90.2% | 63.3% |
| 5030701 | 2484.7.1.1 ↗ | mixed a+b and a/b › Ribonuclease H-like › Uncharacterized protein PF2046 › Uncharacterized protein PF2046 › DUF4152 | 0.54 | 39.0 | 2.57e-01 | 92.7% | 15.7% |
| 5056676 | 319.1.1.0 ↗ | beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones | 0.53 | 38.0 | 3.04e-01 | 92.7% | 34.0% |
| 3321360 | 4210.1.1.1 ↗ | a+b two layers › WGR domain › WGR domain › WGR domain › WGR | 0.53 | 40.0 | 3.45e-01 | 90.2% | 49.3% |
| 4951189 | 802.1.1.0 ↗ | a+b two layers › Hypothetical protein TM0160 › Hypothetical protein TM0160 › Hypothetical protein TM0160 | 0.52 | 38.0 | 3.67e-01 | 80.5% | 70.0% |
| 3441068 | 319.1.1.1 ↗ | beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 | 0.51 | 39.0 | 3.18e-01 | 92.7% | 38.8% |
| 4680096 | 4099.1.1.0 ↗ | a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like | 0.51 | 41.0 | 3.34e-01 | 87.8% | 45.0% |
| 3413411 | 109.21.1.3 ↗ | alpha superhelices › Repetitive alpha hairpins › Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain › Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain › Sec16_C | 0.51 | 38.0 | 2.23e-01 | 90.2% | 81.2% |
| 4004117 | 220.1.1.13 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › DCP1 | 0.51 | 39.0 | 2.80e-01 | 92.7% | 24.7% |
| 1146556 | 10.1.1.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases | 0.50 | 39.0 | 2.60e-01 | 100.0% | 42.1% |
| 3896604 | 389.1.1.100 ↗ | few secondary structure elements › EGF-like › EGF-related › EGF/Laminin › cEGF, EGF_3 | 0.50 | 37.0 | 3.80e-01 | 80.5% | 85.0% |