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LacPavin_0818_WC55_scaffold_113784_prodigal-single.1__X__X__00191
Bact-VirLacPavin_0818_WC55_scaffold_113784_prodigal-single.1__X__X__00191
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 49-122
Domain cluster:
rep: MK448740.1__QBX17560.1__Javan367_0025__00025__D3-70
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF09643.16 best | YopX | 24.3 | 3.60e-05 | 96.0% | 43.8% |
CATH (20)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5yh4A00 | 2.80.10.50 | Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › | 0.71 | 61.0 | 4.60e-01 | 95.9% | 97.8% |
| 1n4kA01 | 2.80.10.50 | Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › | 0.68 | 49.0 | 4.04e-01 | 78.4% | 100.0% |
| 2p1gA02 | 2.30.260.10 | Mainly Beta › Roll › putative xylanase like fold › putative xylanase like domain | 0.64 | 54.0 | 4.93e-01 | 94.6% | 98.0% |
| 3oymA02 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.63 | 52.0 | 5.35e-01 | 93.2% | 94.3% |
| 1azzA01 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.62 | 45.0 | 3.84e-01 | 77.0% | 89.1% |
| 4b3fX02 | 2.40.30.270 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › | 0.59 | 49.0 | 4.45e-01 | 89.2% | 94.9% |
| 1wthD01 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.59 | 40.0 | 3.59e-01 | 70.3% | 91.5% |
| 2akkA00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.59 | 51.0 | 5.16e-01 | 100.0% | 98.6% |
| 2k2jA00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.56 | 42.0 | 3.69e-01 | 83.8% | 79.5% |
| 1gvzA01 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.55 | 45.0 | 3.87e-01 | 90.5% | 68.6% |
| 3q39B02 | 2.40.30.120 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Positive stranded ssRNA viruses | 0.55 | 47.0 | 4.16e-01 | 95.9% | 99.1% |
| 3dfjA01 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.54 | 45.0 | 3.68e-01 | 90.5% | 69.6% |
| 4qrlA00 | 2.40.128.280 | Mainly Beta › Beta Barrel › Lipocalin › | 0.53 | 42.0 | 3.76e-01 | 89.2% | 97.3% |
| 4n0rA03 | 2.60.40.3950 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.53 | 45.0 | 4.01e-01 | 97.3% | 92.7% |
| 2wdtC02 | 3.30.1490.420 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Ubiquitin carboxyl-terminal hydrolase, domain 2 | 0.53 | 43.0 | 3.94e-01 | 93.2% | 91.1% |
| 2b9lA03 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.52 | 43.0 | 3.53e-01 | 93.2% | 80.0% |
| 1p3cA01 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.52 | 35.0 | 3.24e-01 | 73.0% | 99.0% |
| 3fqmA01 | 2.20.25.210 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › Hepatitis C NS5A, domain 1B | 0.52 | 35.0 | 3.75e-01 | 100.0% | 85.2% |
| 3ptyA02 | 2.60.120.940 | Mainly Beta › Sandwich › Jelly Rolls › EmbC, C-terminal domain, subdomain 2 | 0.51 | 45.0 | 3.45e-01 | 100.0% | 94.4% |
| 3q8dA02 | 1.20.1440.120 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Recombination protein O, C-terminal domain | 0.51 | 36.0 | 2.89e-01 | 75.7% | 40.3% |
ECOD (10)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3335348 | 6.1.1.2 ↗ | beta duplicates or obligate multimers › beta-Trefoil › beta-Trefoil › beta-Trefoil › Kunitz_legume | 0.72 | 63.0 | 4.64e-01 | 97.3% | 89.6% |
| 3710007 | 4.1.1.372 ↗ | beta barrels › SH3 › SH3 › SH3 › PF30207 | 0.64 | 56.0 | 4.74e-01 | 95.9% | 100.0% |
| 4007999 | 4.11.1.1 ↗ | beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24 | 0.63 | 52.0 | 4.32e-01 | 91.9% | 80.7% |
| 3398400 | 220.1.1.7 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › IRS | 0.60 | 45.0 | 3.90e-01 | 82.4% | 70.8% |
| 3810482 | 1.1.7.46 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › SMUBP-2_HCS1_1B | 0.59 | 50.0 | 4.15e-01 | 94.6% | 74.8% |
| 3954254 | 4.1.1.387 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_Rv0428c | 0.58 | 45.0 | 4.78e-01 | 95.9% | 96.9% |
| 3296833 | 4.1.1.300 ↗ | beta barrels › SH3 › SH3 › SH3 › KN17_SH3, SH3_KIN17_C | 0.57 | 51.0 | 4.09e-01 | 97.3% | 84.8% |
| 3240167 | 219.1.1.3 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH | 0.54 | 44.0 | 3.04e-01 | 94.6% | 45.7% |
| 5016546 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.54 | 46.0 | 4.64e-01 | 97.3% | 93.3% |
| 3252937 | 1.1.7.35 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › E1_FCCH | 0.52 | 43.0 | 3.91e-01 | 94.6% | 95.2% |