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LacPavin_0818_WC55_scaffold_113784_prodigal-single.1__X__X__00204
Bact-VirLacPavin_0818_WC55_scaffold_113784_prodigal-single.1__X__X__00204
Identity
- Kingdom:
- phage
Quality
72.7
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 1-60
Domain cluster:
representative
CATH (35)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1n5uA01 | 1.10.246.10 | Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › | 0.85 | 65.0 | 5.31e-01 | 81.7% | 46.6% |
| 1tfeA02 | 1.10.286.20 | Mainly Alpha › Orthogonal Bundle › GTP Cyclohydrolase I; Chain A, domain 1 › | 0.85 | 58.0 | 6.57e-01 | 78.3% | 95.6% |
| 1ad6A00 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.79 | 68.0 | 4.83e-01 | 98.3% | 31.9% |
| 3b0cW00 | 1.10.20.10 | Mainly Alpha › Orthogonal Bundle › Histone, subunit A › Histone, subunit A | 0.73 | 57.0 | 5.31e-01 | 85.0% | 68.5% |
| 1gvfB00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.73 | 62.0 | 4.02e-01 | 96.7% | 37.8% |
| 3ermB00 | 1.10.10.710 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › PSPTO_1197 like | 0.71 | 51.0 | 5.01e-01 | 83.3% | 71.9% |
| 2z3xA00 | 6.10.10.80 | Special › Helix non-globular › Helicase, Ruva Protein; domain 3 › Small, acid-soluble spore protein, alpha/beta type-like | 0.70 | 56.0 | 5.77e-01 | 88.3% | 92.9% |
| 5vjhB03 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.70 | 46.0 | 3.06e-01 | 73.3% | 18.3% |
| 3dd9D02 | 6.10.140.2060 | Special › Helix non-globular › Helix Hairpins › | 0.70 | 46.0 | 5.04e-01 | 76.7% | 100.0% |
| 1sg7A00 | 1.10.1740.70 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › ChaB | 0.69 | 56.0 | 5.20e-01 | 90.0% | 78.7% |
| 1is8A01 | 1.10.286.10 | Mainly Alpha › Orthogonal Bundle › GTP Cyclohydrolase I; Chain A, domain 1 › GTP cyclohydrolase I, N-terminal domain | 0.68 | 56.0 | 5.67e-01 | 98.3% | 95.0% |
| 3h36A00 | 1.10.10.400 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Polyribonucleotide nucleotidyltransferase, RNA-binding domain | 0.68 | 54.0 | 5.04e-01 | 95.0% | 70.5% |
| 2i5uA00 | 1.10.10.630 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › DnaD domain-like | 0.67 | 47.0 | 4.41e-01 | 88.3% | 59.7% |
| 3gcgB00 | 1.10.4120.20 | Mainly Alpha › Orthogonal Bundle › SopE-like GEF fold › | 0.66 | 55.0 | 4.14e-01 | 93.3% | 80.9% |
| 5eowA00 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.66 | 58.0 | 3.59e-01 | 100.0% | 42.2% |
| 3a06B03 | 1.10.1740.10 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif | 0.66 | 50.0 | 4.44e-01 | 86.7% | 56.8% |
| 8ctsB01 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.65 | 48.0 | 4.28e-01 | 78.3% | 80.5% |
| 1rp3A01 | 1.10.1740.10 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif | 0.65 | 53.0 | 4.80e-01 | 93.3% | 69.4% |
| 3g36B00 | 1.20.890.10 | Mainly Alpha › Up-down Bundle › cAMP-dependent Protein Kinase, Chain A › cAMP-dependent protein kinase regulatory subunit, dimerization-anchoring domain | 0.64 | 45.0 | 4.71e-01 | 75.0% | 100.0% |
| 1n69B00 | 1.10.225.10 | Mainly Alpha › Orthogonal Bundle › NK-Lysin › Saposin-like | 0.64 | 50.0 | 4.61e-01 | 88.3% | 66.3% |
| 3teqB00 | 1.10.287.3550 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.64 | 58.0 | 4.82e-01 | 100.0% | 84.2% |
| 2jqtA00 | 1.20.1280.40 | Mainly Alpha › Up-down Bundle › Monooxygenase › HHA | 0.63 | 43.0 | 4.47e-01 | 78.3% | 75.4% |
| 8igrI01 | 2.40.270.10 | Mainly Beta › Beta Barrel › Dna-directed Rna Polymerase Ii 140kd Polypeptide; Chain: B; Domain 6 › DNA-directed RNA polymerase, subunit 2, domain 6 | 0.62 | 52.0 | 3.84e-01 | 100.0% | 82.4% |
| 2vxxA00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.62 | 55.0 | 3.95e-01 | 100.0% | 73.3% |
| 2guzB00 | 1.10.287.110 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › DnaJ domain | 0.60 | 44.0 | 4.28e-01 | 93.3% | 69.2% |
| 3k6hA01 | 3.40.109.10 | Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase | 0.60 | 51.0 | 3.67e-01 | 93.3% | 68.3% |
| 1jwjA01 | 3.90.340.10 | Alpha Beta › Alpha-Beta Complex › Nitric Oxide Synthase; Chain A, domain 1 › Nitric Oxide Synthase; Chain A, domain 1 | 0.60 | 49.0 | 3.63e-01 | 93.3% | 56.8% |
| 4h63K00 | 1.10.287.3490 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.58 | 53.0 | 4.46e-01 | 100.0% | 63.3% |
| 2ic6A00 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.58 | 52.0 | 4.91e-01 | 98.3% | 94.4% |
| 4ihqA02 | 1.10.390.40 | Mainly Alpha › Orthogonal Bundle › Neutral Protease; domain 2 › | 0.57 | 40.0 | 3.98e-01 | 78.3% | 70.3% |
| 2bg1A01 | 3.90.1310.40 | Alpha Beta › Alpha-Beta Complex › Penicillin-binding protein 2a (Domain 2) › | 0.56 | 41.0 | 3.93e-01 | 85.0% | 68.8% |
| 1f2eA02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.55 | 47.0 | 3.97e-01 | 100.0% | 58.5% |
| 2ycdA02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.53 | 46.0 | 3.75e-01 | 100.0% | 55.6% |
| 3m1cB01 | 3.30.390.170 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › | 0.53 | 38.0 | 3.15e-01 | 76.7% | 92.7% |
| 6xm1A02 | 3.90.830.10 | Alpha Beta › Alpha-Beta Complex › Syntaxin Binding Protein 1; Chain A, domain 2 › Sec1/Munc18 (SM) protein, domain 3a | 0.53 | 45.0 | 3.56e-01 | 91.7% | 97.3% |
ECOD (43)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3235805 | 101.35.1.0 ↗ | alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX | 0.86 | 56.0 | 6.61e-01 | 70.0% | 100.0% |
| 4983608 | 5058.1.1.0 ↗ | alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region | 0.83 | 74.0 | 7.26e-01 | 98.3% | 95.4% |
| 4543805 | 230.3.1.1 ↗ | a+b two layers › T-fold › Elongation factor Ts (EF-Ts), dimerisation domain › Elongation factor Ts (EF-Ts), dimerisation domain › EF_TS | 0.79 | 68.0 | 5.15e-01 | 91.7% | 62.8% |
| 3426642 | 375.1.1.96 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › YABBY | 0.77 | 53.0 | 5.75e-01 | 71.7% | 86.0% |
| 3998578 | 142.1.1.41 ↗ | alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › RabGAP-TBC | 0.76 | 53.0 | 5.24e-01 | 75.0% | 67.7% |
| 3441581 | 103.4.1.5 ↗ | alpha arrays › RuvA-C › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › KIX_2 | 0.75 | 62.0 | 5.95e-01 | 91.7% | 78.6% |
| 3268369 | 142.1.1.0 ↗ | alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors | 0.75 | 64.0 | 5.45e-01 | 93.3% | 66.3% |
| 5069130 | 6026.1.1.0 ↗ | alpha duplicates or obligate multimers › cwf21 domain › cwf21 domain › cwf21 domain | 0.75 | 56.0 | 5.91e-01 | 85.0% | 98.0% |
| 3278617 | 5063.1.1.0 ↗ | alpha bundles › Photosystem I reaction center subunit X, PsaK › Photosystem I reaction center subunit X, PsaK › Photosystem I reaction center subunit X, PsaK | 0.75 | 56.0 | 5.95e-01 | 85.0% | 100.0% |
| 185221 | 3502.1.1.1 ↗ | alpha bundles › uncharacterized conserved protein › uncharacterized conserved protein › uncharacterized conserved protein › YebG | 0.74 | 55.0 | 5.32e-01 | 85.0% | 71.6% |
| None | — | 0.74 | 64.0 | 3.86e-01 | 91.7% | 59.7% | |
| 3625189 | 5076.1.1.1 ↗ | alpha complex topology › Mitochondrial ADP/ATP carrier-like › Mitochondrial ADP/ATP carrier › Mitochondrial ADP/ATP carrier › Mito_carr | 0.73 | 66.0 | 4.13e-01 | 100.0% | 63.5% |
| 3809576 | 103.4.1.5 ↗ | alpha arrays › RuvA-C › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › KIX_2 | 0.73 | 60.0 | 5.89e-01 | 95.0% | 84.6% |
| 5038476 | 181.1.1.1 ↗ | alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins › SRP54_N | 0.73 | 52.0 | 5.02e-01 | 86.7% | 65.7% |
| 3945220 | 4018.1.1.2 ↗ | a+b two layers › a+b domain in carbohydrate phosphatases › a+b domain in carbohydrate phosphatases › a+b domain in carbohydrate phosphatases › Inositol_P | 0.72 | 63.0 | 4.77e-01 | 98.3% | 44.1% |
| 4356636 | 198.1.1.0 ↗ | alpha arrays › Saposin-like › Saposin-like › Saposin-like | 0.71 | 61.0 | 5.89e-01 | 98.3% | 88.6% |
| 3588902 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.71 | 61.0 | 4.68e-01 | 96.7% | 95.7% |
| 3970007 | 3502.1.1.0 ↗ | alpha bundles › uncharacterized conserved protein › uncharacterized conserved protein › uncharacterized conserved protein | 0.71 | 52.0 | 4.85e-01 | 83.3% | 62.7% |
| 4231508 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.70 | 47.0 | 4.58e-01 | 70.0% | 63.1% |
| 4028482 | 3871.1.1.1 ↗ | alpha duplicates or obligate multimers › PHIST › PHIST › PHIST › PRESAN | 0.70 | 60.0 | 4.66e-01 | 100.0% | 45.0% |
| 3298325 | 3846.1.1.0 ↗ | alpha bundles › IcmR › IcmR › IcmR | 0.70 | 49.0 | 5.26e-01 | 96.7% | 100.0% |
| 3575 | 4084.1.1.1 ↗ | alpha bundles › ChaB-like › ChaB-like › ChaB-like › ChaB | 0.69 | 56.0 | 5.20e-01 | 90.0% | 78.7% |
| 3963355 | 605.1.1.1 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA | 0.69 | 51.0 | 4.70e-01 | 78.3% | 64.0% |
| 1388524 | 243.17.1.1 ↗ | a+b two layers › Cystatin-like › C-terminal domain of PatG › C-terminal domain of PatG › PatG_C | 0.68 | 45.0 | 3.53e-01 | 70.0% | 31.5% |
| 3361803 | 632.3.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Phosphoprotein XD domain › Phosphoprotein XD domain | 0.68 | 47.0 | 5.02e-01 | 75.0% | 88.0% |
| 3709169 | 1008.1.1.29 ↗ | alpha bundles › BRCC36 C-terminal helical domain › BRCC36 C-terminal helical domain › BRCC36 C-terminal helical domain › DGF-1_C | 0.68 | 58.0 | 5.15e-01 | 100.0% | 65.6% |
| 3489683 | 198.1.1.0 ↗ | alpha arrays › Saposin-like › Saposin-like › Saposin-like | 0.67 | 56.0 | 5.33e-01 | 100.0% | 82.7% |
| 3846955 | 198.1.1.10 ↗ | alpha arrays › Saposin-like › Saposin-like › Saposin-like › SapB_2, SapB_1, Saposin | 0.67 | 56.0 | 5.23e-01 | 98.3% | 73.8% |
| 2474880 | 397.7.1.0 ↗ | few secondary structure elements › Toxic hairpin › Ribosome-inactivating protein luffin P1 › Ribosome-inactivating protein luffin P1 | 0.67 | 49.0 | 5.22e-01 | 83.3% | 98.0% |
| 3690556 | 148.1.1.0 ↗ | alpha arrays › Histone-like › Histone-related › Histone | 0.67 | 54.0 | 5.45e-01 | 93.3% | 91.7% |
| 3297133 | 103.4.1.5 ↗ | alpha arrays › RuvA-C › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › KIX_2 | 0.66 | 50.0 | 4.76e-01 | 91.7% | 69.3% |
| 4012407 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.65 | 56.0 | 5.67e-01 | 100.0% | 96.7% |
| 3923696 | 198.1.1.0 ↗ | alpha arrays › Saposin-like › Saposin-like › Saposin-like | 0.65 | 55.0 | 4.86e-01 | 98.3% | 67.8% |
| 4944568 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.65 | 56.0 | 5.50e-01 | 100.0% | 89.2% |
| 3707467 | 2004.1.1.1 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA | 0.63 | 48.0 | 3.21e-01 | 85.0% | 48.4% |
| 4571060 | 3291.1.1.207 ↗ | alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › DUF445 | 0.63 | 52.0 | 4.13e-01 | 100.0% | 47.1% |
| 3269226 | 101.1.10.0 ↗ | alpha arrays › HTH › HTH › Cyclin-like | 0.63 | 46.0 | 4.29e-01 | 78.3% | 68.0% |
| 3614890 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.61 | 49.0 | 3.30e-01 | 90.0% | 66.7% |
| 3811835 | 7076.1.1.0 ↗ | 0.61 | 49.0 | 4.80e-01 | 86.7% | 81.5% | |
| 4026684 | 192.20.1.7 ↗ | alpha bundles › Long alpha-hairpin › helical hairpin domain in transcriptional anti-activator ExsD › helical hairpin domain in transcriptional anti-activator ExsD › PF26729 | 0.55 | 47.0 | 3.90e-01 | 100.0% | 54.3% |
| 4508258 | 2498.1.1.22 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › YbeY | 0.55 | 41.0 | 3.10e-01 | 81.7% | 90.0% |
| 3796068 | 148.1.3.40 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › ORC5_lid | 0.54 | 39.0 | 3.47e-01 | 81.7% | 52.6% |
| 1095885 | 6128.1.1.0 ↗ | 0.53 | 41.0 | 4.12e-01 | 95.0% | 87.3% |