←Back to structures
LacPavin_0818_WC55_scaffold_113784_prodigal-single.1__X__X__00237
Bact-VirLacPavin_0818_WC55_scaffold_113784_prodigal-single.1__X__X__00237
Identity
- Kingdom:
- phage
Quality
69.5
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 46-107
Domain cluster:
rep: ON014757.1__UQS95251.1__Pam5_35__00035__D105-158
CATH (7)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 7tuvA01 | 2.40.50.690 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.59 | 40.0 | 3.57e-01 | 72.6% | 77.9% |
| 1q1uA00 | 2.80.10.50 | Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › | 0.55 | 41.0 | 3.33e-01 | 87.1% | 97.8% |
| 4eaeA00 | 2.60.40.4170 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.53 | 39.0 | 2.87e-01 | 80.6% | 90.8% |
| 2dfkC02 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.51 | 40.0 | 3.14e-01 | 88.7% | 62.4% |
| 3igzB01 | 3.40.720.10 | Alpha Beta › 3-Layer(aba) Sandwich › Alkaline Phosphatase, subunit A › Alkaline Phosphatase, subunit A | 0.51 | 44.0 | 2.82e-01 | 96.8% | 76.4% |
| 3m1uA01 | 3.90.1720.10 | Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) | 0.50 | 41.0 | 3.14e-01 | 100.0% | 55.6% |
| 3a58A01 | 2.30.29.90 | Mainly Beta › Roll › PH-domain like › | 0.50 | 38.0 | 2.89e-01 | 88.7% | 53.4% |
ECOD (11)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5007173 | 2004.1.1.293 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_15 | 0.61 | 52.0 | 3.56e-01 | 98.4% | 55.0% |
| 4036369 | 325.1.7.0 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif | 0.59 | 41.0 | 3.51e-01 | 74.2% | 75.2% |
| 3471759 | 6.1.1.11 ↗ | beta duplicates or obligate multimers › beta-Trefoil › beta-Trefoil › beta-Trefoil › Fascin | 0.57 | 43.0 | 3.62e-01 | 88.7% | 100.0% |
| 1160885 | 211.1.1.8 ↗ | a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › CppA_N | 0.56 | 34.0 | 3.08e-01 | 87.1% | 42.0% |
| 5065747 | 4.11.1.1 ↗ | beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24 | 0.56 | 46.0 | 4.18e-01 | 100.0% | 66.7% |
| 4998870 | 4.1.1.483 ↗ | beta barrels › SH3 › SH3 › SH3 › RRXRR | 0.55 | 39.0 | 3.59e-01 | 93.5% | 56.5% |
| 5083031 | 247.1.1.30 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Anti-Pycsar_Apyc1 | 0.52 | 39.0 | 2.72e-01 | 83.9% | 57.1% |
| 3504448 | 6.1.1.1 ↗ | beta duplicates or obligate multimers › beta-Trefoil › beta-Trefoil › beta-Trefoil › FGF | 0.52 | 35.0 | 2.92e-01 | 71.0% | 71.7% |
| 3596520 | 7515.1.1.0 ↗ | a/b three-layered sandwiches › Alkaline phosphatase-like › Alkaline phosphatase-like › Alkaline phosphatase-like | 0.51 | 44.0 | 2.82e-01 | 96.8% | 77.7% |
| 3968970 | 1.1.7.83 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › YknX_C | 0.50 | 38.0 | 3.30e-01 | 80.6% | 82.1% |
| 4998584 | 227.1.1.1 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N | 0.50 | 37.0 | 2.95e-01 | 80.6% | 86.7% |