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LacPavin_0818_WC55_scaffold_113784_prodigal-single.1__X__X__00240
Bact-VirLacPavin_0818_WC55_scaffold_113784_prodigal-single.1__X__X__00240
Identity
- Kingdom:
- phage
Quality
94.1
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-58
Domain cluster:
representative
CATH (18)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2bayE00 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.65 | 44.0 | 4.43e-01 | 71.9% | 83.1% |
| 1kbeA00 | 3.30.60.20 | Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › | 0.63 | 47.0 | 4.97e-01 | 82.5% | 100.0% |
| 4f03A01 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.63 | 48.0 | 4.05e-01 | 86.0% | 97.1% |
| 3lrqB00 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.62 | 43.0 | 3.89e-01 | 73.7% | 62.5% |
| 1v87A01 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.58 | 48.0 | 4.33e-01 | 98.2% | 84.7% |
| 2xqnT01 | 2.10.110.10 | Mainly Beta › Ribbon › Cysteine Rich Protein › Cysteine Rich Protein | 0.58 | 39.0 | 3.85e-01 | 70.2% | 71.0% |
| 1r79A01 | 3.30.60.20 | Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › | 0.58 | 43.0 | 4.43e-01 | 86.0% | 96.4% |
| 2fnoA01 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.57 | 43.0 | 3.79e-01 | 87.7% | 96.8% |
| 1y8fA00 | 3.30.60.20 | Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › | 0.57 | 43.0 | 4.47e-01 | 87.7% | 98.0% |
| 4cvbA00 | 2.140.10.10 | Mainly Beta › 8 Propeller › Methanol Dehydrogenase; Chain A › Quinoprotein alcohol dehydrogenase-like superfamily | 0.56 | 43.0 | 2.59e-01 | 94.7% | 18.9% |
| 1n27A00 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.55 | 40.0 | 3.39e-01 | 80.7% | 46.9% |
| 1khcA01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.54 | 40.0 | 3.87e-01 | 100.0% | 72.3% |
| 2rowA01 | 3.30.60.20 | Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › | 0.54 | 42.0 | 4.01e-01 | 93.0% | 83.1% |
| 4hcsA00 | 2.40.50.40 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.52 | 33.0 | 3.15e-01 | 75.4% | 52.2% |
| 2e70A00 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.52 | 36.0 | 3.34e-01 | 100.0% | 56.3% |
| 2lw7A02 | 3.40.50.800 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain | 0.52 | 43.0 | 3.47e-01 | 93.0% | 82.5% |
| 1pg5B02 | 2.30.30.20 | Mainly Beta › Roll › SH3 type barrels. › Aspartate carbamoyltransferase regulatory subunit, C-terminal domain | 0.51 | 39.0 | 3.98e-01 | 100.0% | 86.0% |
| 2cmzA03 | 2.30.29.130 | Mainly Beta › Roll › PH-domain like › | 0.50 | 43.0 | 3.74e-01 | 100.0% | 80.6% |
ECOD (49)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3243705 | 377.1.1.4 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › GATA | 0.76 | 57.0 | 6.02e-01 | 91.2% | 90.0% |
| 3203266 | 376.1.2.26 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › PF28755 | 0.74 | 53.0 | 5.88e-01 | 82.5% | 97.8% |
| 5051552 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.70 | 58.0 | 4.91e-01 | 96.5% | 84.0% |
| 4014164 | 376.1.2.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain | 0.69 | 56.0 | 5.38e-01 | 87.7% | 76.9% |
| 3508600 | 376.1.2.2 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1_2 | 0.67 | 51.0 | 5.31e-01 | 87.7% | 94.0% |
| 3639307 | 375.1.1.275 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › PF28755 | 0.66 | 47.0 | 4.23e-01 | 78.9% | 53.8% |
| 3806994 | 376.1.2.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain | 0.66 | 52.0 | 5.03e-01 | 91.2% | 98.5% |
| 3826536 | 376.1.2.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain | 0.64 | 44.0 | 4.54e-01 | 73.7% | 89.1% |
| 3509175 | 376.1.2.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain | 0.64 | 48.0 | 4.39e-01 | 84.2% | 68.8% |
| 5052405 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.64 | 52.0 | 4.54e-01 | 91.2% | 76.4% |
| 3238073 | 376.1.2.1 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1_1 | 0.64 | 52.0 | 5.19e-01 | 93.0% | 91.7% |
| 3835946 | 376.1.2.2 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1_2 | 0.63 | 46.0 | 4.98e-01 | 80.7% | 100.0% |
| 3380774 | 376.1.1.21 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 | 0.63 | 45.0 | 4.38e-01 | 77.2% | 88.9% |
| 3803854 | 376.1.2.2 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1_2 | 0.62 | 50.0 | 5.07e-01 | 89.5% | 94.5% |
| 3606453 | 376.1.2.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain | 0.61 | 50.0 | 5.09e-01 | 89.5% | 100.0% |
| 3297981 | 252.1.1.1 ↗ | a+b two layers › DNA-binding domain › Methyl-CpG-binding domain, MBD › Methyl-CpG-binding domain, MBD › MBD | 0.61 | 46.0 | 4.71e-01 | 91.2% | 83.6% |
| 3809493 | 376.1.2.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain | 0.61 | 41.0 | 4.66e-01 | 73.7% | 100.0% |
| 3628466 | 376.1.2.1 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1_1 | 0.61 | 47.0 | 4.77e-01 | 93.0% | 90.9% |
| 3519467 | 304.24.1.4 ↗ | a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › RF3_C | 0.60 | 42.0 | 3.15e-01 | 73.7% | 91.9% |
| 3804569 | 376.1.2.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain | 0.60 | 40.0 | 4.44e-01 | 71.9% | 100.0% |
| 3230270 | 376.1.2.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain | 0.60 | 46.0 | 4.67e-01 | 86.0% | 100.0% |
| 3790956 | 376.1.2.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain | 0.59 | 47.0 | 4.45e-01 | 89.5% | 78.3% |
| 3396514 | 386.1.1.259 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › PF29169 | 0.59 | 42.0 | 4.56e-01 | 94.7% | 97.8% |
| 3268433 | 376.1.1.21 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 | 0.59 | 46.0 | 4.20e-01 | 89.5% | 88.7% |
| 3812428 | 376.1.2.2 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1_2 | 0.59 | 46.0 | 3.48e-01 | 89.5% | 74.2% |
| 2793138 | 252.1.1.1 ↗ | a+b two layers › DNA-binding domain › Methyl-CpG-binding domain, MBD › Methyl-CpG-binding domain, MBD › MBD | 0.59 | 47.0 | 4.42e-01 | 93.0% | 72.1% |
| 3315604 | 376.1.1.21 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 | 0.59 | 44.0 | 4.36e-01 | 87.7% | 89.2% |
| 3845514 | 376.1.2.1 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1_1 | 0.59 | 46.0 | 4.59e-01 | 91.2% | 90.0% |
| 3733718 | 4292.2.1.0 ↗ | a+b two layers › FlaG-like › MAGUK binding stalk (MBS) domain › MAGUK binding stalk (MBS) domain | 0.59 | 49.0 | 4.35e-01 | 96.5% | 67.1% |
| 3483963 | 376.1.2.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain | 0.59 | 46.0 | 4.51e-01 | 93.0% | 92.3% |
| 3403339 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.58 | 45.0 | 4.10e-01 | 98.2% | 61.3% |
| 3881917 | 376.1.2.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain | 0.58 | 46.0 | 4.04e-01 | 93.0% | 56.8% |
| 3820284 | 376.1.2.2 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1_2 | 0.58 | 44.0 | 4.64e-01 | 91.2% | 100.0% |
| 3211857 | 376.1.2.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain | 0.58 | 39.0 | 4.18e-01 | 71.9% | 97.8% |
| 3787821 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.57 | 46.0 | 3.88e-01 | 93.0% | 69.5% |
| 3315597 | 252.1.1.0 ↗ | a+b two layers › DNA-binding domain › Methyl-CpG-binding domain, MBD › Methyl-CpG-binding domain, MBD | 0.57 | 46.0 | 4.18e-01 | 91.2% | 84.8% |
| 3700774 | 376.1.2.23 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › PF26235 | 0.56 | 43.0 | 4.27e-01 | 84.2% | 91.7% |
| 3858981 | 295.1.1.4 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › COMM_domain | 0.56 | 42.0 | 3.92e-01 | 80.7% | 82.9% |
| 3625637 | 376.1.2.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain | 0.55 | 41.0 | 4.22e-01 | 86.0% | 96.0% |
| 3825317 | 376.1.2.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain | 0.55 | 40.0 | 4.21e-01 | 80.7% | 92.0% |
| 5079258 | 7089.1.1.0 ↗ | a+b two layers › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD | 0.55 | 39.0 | 4.29e-01 | 84.2% | 100.0% |
| 3475813 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.54 | 36.0 | 3.84e-01 | 94.7% | 88.9% |
| 3174350 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.53 | 44.0 | 4.22e-01 | 91.2% | 96.9% |
| 3833930 | 376.1.2.2 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1_2 | 0.53 | 42.0 | 4.25e-01 | 91.2% | 100.0% |
| 3673072 | 376.1.2.2 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1_2 | 0.52 | 42.0 | 4.06e-01 | 91.2% | 98.5% |
| 4447644 | 2004.1.1.514 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23, AAA_29, SbcC_Walker_B | 0.51 | 40.0 | 2.46e-01 | 100.0% | 12.7% |
| 3412678 | 2007.1.1.27 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Class I glutamine amidotransferase-like › BPL_N | 0.51 | 41.0 | 2.91e-01 | 100.0% | 85.1% |
| 3221547 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.51 | 38.0 | 3.40e-01 | 80.7% | 70.0% |
| 3804128 | 376.1.2.2 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1_2 | 0.50 | 38.0 | 3.28e-01 | 91.2% | 61.8% |