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LacPavin_0818_WC55_scaffold_113784_prodigal-single.1__X__X__00289
Bact-VirLacPavin_0818_WC55_scaffold_113784_prodigal-single.1__X__X__00289
Identity
- Kingdom:
- phage
Quality
78.6
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 6-56
Domain cluster:
representative
CATH (25)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3t7lA00 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.64 | 50.0 | 4.41e-01 | 100.0% | 58.1% |
| 4kdcA00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.64 | 44.0 | 2.95e-01 | 74.5% | 85.3% |
| 6s2wA01 | 3.30.2260.10 | Alpha Beta › 2-Layer Sandwich › ERH-like fold › Enhancer of rudimentary | 0.62 | 44.0 | 3.74e-01 | 74.5% | 84.1% |
| 2z30B00 | 3.30.70.80 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Peptidase S8 propeptide/proteinase inhibitor I9 | 0.60 | 43.0 | 4.02e-01 | 78.4% | 60.0% |
| 3e59B02 | 3.30.60.140 | Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › | 0.59 | 40.0 | 4.25e-01 | 88.2% | 100.0% |
| 7ejoB01 | 3.30.2260.10 | Alpha Beta › 2-Layer Sandwich › ERH-like fold › Enhancer of rudimentary | 0.59 | 42.0 | 3.61e-01 | 76.5% | 88.0% |
| 2nmlA00 | 3.30.2260.10 | Alpha Beta › 2-Layer Sandwich › ERH-like fold › Enhancer of rudimentary | 0.58 | 41.0 | 3.35e-01 | 76.5% | 81.0% |
| 3vhtB02 | 3.30.160.60 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger | 0.58 | 34.0 | 3.89e-01 | 100.0% | 85.3% |
| 2iw2A01 | 3.40.350.10 | Alpha Beta › 3-Layer(aba) Sandwich › Creatine Amidinohydrolase; Chain A, domain 1 › Creatinase/prolidase N-terminal domain | 0.57 | 39.0 | 2.81e-01 | 74.5% | 50.0% |
| 2yzqA01 | 3.10.580.10 | Alpha Beta › Roll › CBS-domain › CBS-domain | 0.57 | 43.0 | 3.68e-01 | 92.2% | 91.9% |
| 3p0jA03 | 1.10.240.10 | Mainly Alpha › Orthogonal Bundle › Tyrosyl-Transfer RNA Synthetase › Tyrosyl-Transfer RNA Synthetase | 0.56 | 37.0 | 3.16e-01 | 70.6% | 45.3% |
| 2xzm500 | 3.30.1740.20 | Alpha Beta › 2-Layer Sandwich › first zn-finger domain of poly(adp-ribose) polymerase-1 › Ribosomal protein S26 | 0.55 | 48.0 | 3.88e-01 | 98.0% | 68.4% |
| 6nw1A00 | 2.20.28.10 | Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › | 0.55 | 38.0 | 4.03e-01 | 88.2% | 82.2% |
| 5dm6S01 | 2.40.240.10 | Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Ribosomal Protein L25; Chain P | 0.55 | 41.0 | 3.64e-01 | 88.2% | 79.1% |
| 1scjB00 | 3.30.70.80 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Peptidase S8 propeptide/proteinase inhibitor I9 | 0.54 | 39.0 | 3.54e-01 | 78.4% | 63.4% |
| 1owqA02 | 3.10.50.10 | Alpha Beta › Roll › Chitinase A; domain 3 › | 0.52 | 39.0 | 3.69e-01 | 88.2% | 92.6% |
| 2xocA01 | 3.30.40.140 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › | 0.52 | 39.0 | 3.53e-01 | 86.3% | 56.4% |
| 3u2rA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.52 | 38.0 | 3.02e-01 | 90.2% | 44.4% |
| 2r7dA03 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.51 | 36.0 | 3.48e-01 | 76.5% | 78.3% |
| 2xjyA01 | 2.10.110.10 | Mainly Beta › Ribbon › Cysteine Rich Protein › Cysteine Rich Protein | 0.51 | 45.0 | 4.20e-01 | 100.0% | 87.3% |
| 3kzgA01 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.51 | 39.0 | 3.01e-01 | 88.2% | 79.8% |
| 5kzwA01 | 4.10.110.10 | Few Secondary Structures › Irregular › Spasmolytic Protein; domain 1 › Spasmolytic Protein, domain 1 | 0.51 | 33.0 | 3.53e-01 | 70.6% | 79.5% |
| 3ephA03 | 3.30.160.60 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger | 0.51 | 36.0 | 3.61e-01 | 100.0% | 75.9% |
| 4em2A00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.50 | 37.0 | 2.76e-01 | 82.4% | 40.7% |
| 3vpbE00 | 2.20.28.160 | Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › | 0.50 | 40.0 | 3.92e-01 | 98.0% | 87.5% |
ECOD (52)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3247304 | 376.1.1.1 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 | 0.71 | 51.0 | 4.92e-01 | 96.1% | 66.7% |
| 5041161 | 304.7.1.0 ↗ | a+b two layers › Alpha-beta plaits › Protease propeptides/inhibitors › Protease propeptides/inhibitors | 0.65 | 47.0 | 4.31e-01 | 76.5% | 64.6% |
| 3509877 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.64 | 40.0 | 4.34e-01 | 98.0% | 80.0% |
| 4959109 | 304.7.1.2 ↗ | a+b two layers › Alpha-beta plaits › Protease propeptides/inhibitors › Protease propeptides/inhibitors › Inhibitor_I9 | 0.63 | 44.0 | 3.85e-01 | 74.5% | 62.5% |
| 3276937 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.63 | 36.0 | 4.11e-01 | 90.2% | 80.0% |
| 4013540 | 376.1.3.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger | 0.62 | 53.0 | 4.58e-01 | 100.0% | 77.6% |
| 3723251 | 375.10.1.1 ↗ | few secondary structure elements › Rubredoxin-like › Zinc finger domain of DNA polymerase-alpha › Zinc finger domain of DNA polymerase-alpha › zf-DNA_Pol | 0.62 | 43.0 | 3.88e-01 | 72.5% | 70.0% |
| 3663020 | 375.3.1.1 ↗ | few secondary structure elements › Rubredoxin-like › CSL zinc finger › CSL zinc finger › zf-DNL | 0.62 | 41.0 | 3.70e-01 | 70.6% | 85.3% |
| 2759971 | 376.1.1.37 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › SLX1_C | 0.62 | 51.0 | 4.29e-01 | 100.0% | 52.7% |
| 4031664 | 375.1.1.75 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › DUF2197 | 0.62 | 44.0 | 4.85e-01 | 90.2% | 97.5% |
| 3781742 | 304.7.1.0 ↗ | a+b two layers › Alpha-beta plaits › Protease propeptides/inhibitors › Protease propeptides/inhibitors | 0.61 | 45.0 | 4.03e-01 | 78.4% | 64.3% |
| 4098939 | 601.23.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › DNA repair protein MutS, domain III › DNA repair protein MutS, domain III | 0.61 | 48.0 | 3.00e-01 | 88.2% | 23.9% |
| 4195872 | 556.1.1.0 ↗ | alpha arrays › KRAB domain (Kruppel-associated box, Pfam 01352) › KRAB domain (Kruppel-associated box, Pfam 01352) › KRAB domain (Kruppel-associated box, Pfam 01352) | 0.60 | 35.0 | 2.68e-01 | 92.2% | 24.3% |
| 3181540 | 304.7.1.2 ↗ | a+b two layers › Alpha-beta plaits › Protease propeptides/inhibitors › Protease propeptides/inhibitors › Inhibitor_I9 | 0.60 | 43.0 | 4.03e-01 | 78.4% | 69.2% |
| 3250876 | 376.1.3.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger | 0.59 | 47.0 | 4.75e-01 | 90.2% | 88.0% |
| 3542550 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.59 | 35.0 | 3.46e-01 | 98.0% | 53.7% |
| 5003906 | 304.7.1.0 ↗ | a+b two layers › Alpha-beta plaits › Protease propeptides/inhibitors › Protease propeptides/inhibitors | 0.59 | 41.0 | 3.41e-01 | 74.5% | 50.5% |
| 4956150 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.58 | 40.0 | 3.89e-01 | 90.2% | 65.5% |
| 5071848 | 304.7.1.0 ↗ | a+b two layers › Alpha-beta plaits › Protease propeptides/inhibitors › Protease propeptides/inhibitors | 0.58 | 44.0 | 3.70e-01 | 82.4% | 70.6% |
| 4098159 | 601.23.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › DNA repair protein MutS, domain III › DNA repair protein MutS, domain III | 0.58 | 50.0 | 3.18e-01 | 100.0% | 19.6% |
| 4939498 | 304.7.1.0 ↗ | a+b two layers › Alpha-beta plaits › Protease propeptides/inhibitors › Protease propeptides/inhibitors | 0.57 | 41.0 | 3.81e-01 | 76.5% | 67.7% |
| 4985310 | 304.7.1.2 ↗ | a+b two layers › Alpha-beta plaits › Protease propeptides/inhibitors › Protease propeptides/inhibitors › Inhibitor_I9 | 0.57 | 39.0 | 3.79e-01 | 78.4% | 63.3% |
| 4958857 | 304.7.1.0 ↗ | a+b two layers › Alpha-beta plaits › Protease propeptides/inhibitors › Protease propeptides/inhibitors | 0.57 | 41.0 | 3.77e-01 | 78.4% | 60.0% |
| 4387157 | 304.7.1.0 ↗ | a+b two layers › Alpha-beta plaits › Protease propeptides/inhibitors › Protease propeptides/inhibitors | 0.57 | 42.0 | 3.69e-01 | 82.4% | 77.5% |
| 3963491 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.57 | 36.0 | 3.97e-01 | 88.2% | 85.0% |
| 4194516 | 601.23.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › DNA repair protein MutS, domain III › DNA repair protein MutS, domain III | 0.56 | 48.0 | 3.06e-01 | 98.0% | 18.6% |
| 5069078 | 304.7.1.21 ↗ | a+b two layers › Alpha-beta plaits › Protease propeptides/inhibitors › Protease propeptides/inhibitors › PF30773 | 0.56 | 43.0 | 3.59e-01 | 84.3% | 60.0% |
| 5005122 | 304.7.1.6 ↗ | a+b two layers › Alpha-beta plaits › Protease propeptides/inhibitors › Protease propeptides/inhibitors › Tk-SP_N-pro | 0.56 | 39.0 | 3.64e-01 | 74.5% | 60.0% |
| 3703311 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.56 | 38.0 | 3.91e-01 | 92.2% | 74.0% |
| 4380569 | 601.23.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › DNA repair protein MutS, domain III › DNA repair protein MutS, domain III | 0.55 | 46.0 | 2.99e-01 | 100.0% | 20.4% |
| 5012881 | 304.7.1.0 ↗ | a+b two layers › Alpha-beta plaits › Protease propeptides/inhibitors › Protease propeptides/inhibitors | 0.55 | 39.0 | 3.59e-01 | 76.5% | 60.0% |
| 3524337 | 101.1.2.288 ↗ | alpha arrays › HTH › HTH › winged helix domain › Stk19 | 0.55 | 44.0 | 4.00e-01 | 100.0% | 98.8% |
| 4980605 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.55 | 37.0 | 3.85e-01 | 72.5% | 97.8% |
| 4990489 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.55 | 36.0 | 3.71e-01 | 90.2% | 72.0% |
| 3478140 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.54 | 32.0 | 3.26e-01 | 94.1% | 56.0% |
| 3710059 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.54 | 42.0 | 3.81e-01 | 98.0% | 85.5% |
| 3203321 | 386.1.1.133 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2+zf-C2H2_4 | 0.53 | 41.0 | 4.21e-01 | 100.0% | 90.0% |
| 4583179 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.53 | 42.0 | 4.19e-01 | 92.2% | 89.1% |
| 4931659 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.53 | 40.0 | 3.49e-01 | 86.3% | 70.6% |
| 4939386 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.53 | 36.0 | 3.82e-01 | 90.2% | 82.2% |
| 5041741 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.53 | 38.0 | 3.41e-01 | 78.4% | 56.0% |
| 3271776 | 376.1.2.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain | 0.52 | 37.0 | 3.13e-01 | 100.0% | 43.3% |
| 5065792 | 301.1.1.2 ↗ | a+b three layers › Bacillus chorismate mutase-like › L30e-like › L30e-like › eRF1_3 | 0.52 | 37.0 | 2.73e-01 | 96.1% | 25.8% |
| 3704672 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.52 | 36.0 | 3.91e-01 | 88.2% | 92.5% |
| 3255511 | 375.1.1.179 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIE_alpha | 0.52 | 39.0 | 2.82e-01 | 92.2% | 35.8% |
| 3436608 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.52 | 37.0 | 3.86e-01 | 84.3% | 91.1% |
| 3403970 | 10.4.1.1 ↗ | beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › CUB | 0.52 | 40.0 | 2.99e-01 | 98.0% | 36.0% |
| 3485716 | 101.1.2.31 ↗ | alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha | 0.52 | 40.0 | 2.86e-01 | 94.1% | 34.7% |
| 4020975 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.51 | 39.0 | 3.25e-01 | 90.2% | 68.6% |
| 3287847 | 304.3.1.1 ↗ | a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain › HMA | 0.50 | 36.0 | 3.42e-01 | 78.4% | 67.7% |
| 3393714 | 10.4.1.0 ↗ | beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain | 0.50 | 41.0 | 2.98e-01 | 98.0% | 36.5% |
| 5046198 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.50 | 35.0 | 3.51e-01 | 76.5% | 100.0% |