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LacPavin_0818_WC55_scaffold_113784_prodigal-single.1__X__X__00299
Bact-VirLacPavin_0818_WC55_scaffold_113784_prodigal-single.1__X__X__00299
Identity
- Kingdom:
- phage
Quality
95.8
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 2-94
Domain cluster:
representative
CATH (4)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1wznA02 | 2.20.25.110 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › S-adenosyl-L-methionine-dependent methyltransferases | 0.56 | 31.0 | 3.86e-01 | 89.2% | 89.3% |
| 6vddD01 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.55 | 38.0 | 3.01e-01 | 72.0% | 90.7% |
| 4dt4A02 | 2.40.10.330 | Mainly Beta › Beta Barrel › Thrombin, subunit H › | 0.51 | 25.0 | 3.03e-01 | 86.0% | 71.9% |
| 4d8mA03 | 2.100.10.40 | Mainly Beta › Aligned Prism › Vitelline Membrane Outer Layer Protein I, subunit A › | 0.51 | 41.0 | 3.29e-01 | 90.3% | 65.8% |
ECOD (8)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4613400 | 2003.1.2.16 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3,NAD_binding_8 | 0.54 | 46.0 | 3.13e-01 | 100.0% | 88.7% |
| 3980806 | 636.1.1.2 ↗ | alpha arrays › SopE-like GEF domain › SopE-like GEF domain › SopE-like GEF domain › Sif | 0.53 | 43.0 | 3.49e-01 | 88.2% | 66.7% |
| 4014196 | 2003.1.2.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain | 0.51 | 44.0 | 2.84e-01 | 95.7% | 83.2% |
| 3976326 | 5084.3.1.2 ↗ | beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter › IAT_beta | 0.51 | 41.0 | 3.28e-01 | 84.9% | 48.9% |
| 4876572 | 4.1.1.19 ↗ | beta barrels › SH3 › SH3 › SH3 › LSM | 0.51 | 37.0 | 3.83e-01 | 79.6% | 79.5% |
| 4012140 | 2003.1.2.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain | 0.51 | 43.0 | 2.67e-01 | 95.7% | 94.0% |
| 4948574 | 2484.1.1.34 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_exo1 | 0.51 | 43.0 | 2.93e-01 | 97.8% | 69.0% |
| 3438573 | 244.1.1.0 ↗ | a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C | 0.50 | 41.0 | 2.63e-01 | 94.6% | 89.7% |